Read the Docs build information
Build id: 739206
Project: quantify-quantify-scheduler
Version: latest
Commit: 8329ae26258069ab14a6f54e7c6319af6c3c427c
Date: 2021-10-06T14:03:31.005462Z
State: finished
Success: True


[rtd-command-info] start-time: 2021-10-06T14:03:33.006102Z, end-time: 2021-10-06T14:03:37.973730Z, duration: 4, exit-code: 0
git clone --no-single-branch --depth 50 git@gitlab.com:quantify-os/quantify-scheduler.git .
Cloning into '.'...
Warning: Permanently added 'gitlab.com,172.65.251.78' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2021-10-06T14:03:38.109411Z, end-time: 2021-10-06T14:03:38.288139Z, duration: 0, exit-code: 0
git checkout --force origin/develop
Note: checking out 'origin/develop'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 8329ae26 Merge branch '200-transmonelement-docstrings' into 'develop'

[rtd-command-info] start-time: 2021-10-06T14:03:38.409102Z, end-time: 2021-10-06T14:03:38.485124Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2021-10-06T14:03:39.806187Z, end-time: 2021-10-06T14:03:45.399782Z, duration: 5, exit-code: 0
python3.8 -mvirtualenv --system-site-packages 
Using base prefix '/home/docs/.pyenv/versions/3.8.6'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/latest/bin/python3.8
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2021-10-06T14:03:45.542304Z, end-time: 2021-10-06T14:03:46.702850Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
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[rtd-command-info] start-time: 2021-10-06T14:03:46.847536Z, end-time: 2021-10-06T14:04:13.934079Z, duration: 27, exit-code: 0
python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2
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Building wheels for collected packages: mock, pillow, future
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Successfully built mock pillow future
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible.
Successfully installed Jinja2-3.0.2 MarkupSafe-2.0.1 Pygments-2.10.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.5.30 charset-normalizer-2.0.6 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.2 imagesize-1.2.0 mock-1.0.1 packaging-21.0 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.3 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 setuptools-58.2.0 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.7

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python -m pip install --exists-action=w --no-cache-dir -r requirements_dev.txt
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[rtd-command-info] start-time: 2021-10-06T14:04:45.249364Z, end-time: 2021-10-06T14:05:33.894944Z, duration: 48, exit-code: 0
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Processing /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest
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   pip 21.3 will remove support for this functionality. You can find discussion regarding this at https://github.com/pypa/pip/issues/7555.
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Building wheels for collected packages: quantify-scheduler, qblox-instruments, requirements-parser, lmfit, asteval
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Successfully built quantify-scheduler qblox-instruments requirements-parser lmfit asteval
Installing collected packages: python-dateutil, setuptools, pygments, pyasn1, rsa, pyasn1-modules, protobuf, cachetools, googleapis-common-protos, google-auth, opencensus-context, numpy, kiwisolver, google-api-core, contextlib2, sortedcontainers, schema, psutil, pandas, opencensus, matplotlib, h5py, cloudpickle, zhinst, xarray, wrapt, websockets, uncertainties, sortedcollections, scipy, requirements-parser, pyvisa, pyserial, PyQt5-sip, PyQt5-Qt5, opencensus-ext-azure, marshmallow, loky, h5netcdf, broadbean, atomicwrites, asteval, zhinst-toolkit, xxhash, typing-inspect, toolz, tenacity, spirack, qcodes, pyqtgraph, pyqt5, marshmallow-enum, lmfit, directory-tree, appnope, adaptive, zhinst-qcodes, quantify-core, qblox-instruments, plotly, pathvalidate, dataclasses-json, columnar, quantify-scheduler
  Attempting uninstall: python-dateutil
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ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
astroid 2.8.0 requires wrapt<1.13,>=1.11, but you have wrapt 1.13.1 which is incompatible.
Successfully installed PyQt5-Qt5-5.15.2 PyQt5-sip-12.9.0 adaptive-0.13.0 appnope-0.1.2 asteval-0.9.25 atomicwrites-1.4.0 broadbean-0.10.0 cachetools-4.2.4 cloudpickle-2.0.0 columnar-1.3.1 contextlib2-21.6.0 dataclasses-json-0.5.6 directory-tree-0.0.2 google-api-core-1.31.3 google-auth-1.35.0 googleapis-common-protos-1.53.0 h5netcdf-0.11.0 h5py-3.4.0 kiwisolver-1.3.2 lmfit-1.0.2 loky-3.0.0 marshmallow-3.13.0 marshmallow-enum-1.5.1 matplotlib-3.4.3 numpy-1.21.2 opencensus-0.7.13 opencensus-context-0.1.2 opencensus-ext-azure-1.0.8 pandas-1.3.3 pathvalidate-2.5.0 plotly-5.3.1 protobuf-3.17.3 psutil-5.8.0 pyasn1-0.4.8 pyasn1-modules-0.2.8 pygments-2.10.0 pyqt5-5.15.4 pyqtgraph-0.12.2 pyserial-3.5 python-dateutil-2.8.2 pyvisa-1.11.3 qblox-instruments-0.4.0 qcodes-0.29.0 quantify-core-0.5.0 quantify-scheduler-0.4.0 requirements-parser-0.2.0 rsa-4.7.2 schema-0.7.4 scipy-1.7.1 setuptools-58.0.1 sortedcollections-2.1.0 sortedcontainers-2.4.0 spirack-0.2.4 tenacity-8.0.1 toolz-0.11.1 typing-inspect-0.7.1 uncertainties-3.1.6 websockets-10.0 wrapt-1.13.1 xarray-0.19.0 xxhash-2.0.2 zhinst-21.8.20515 zhinst-qcodes-0.1.4 zhinst-toolkit-0.2.1

[rtd-command-info] start-time: 2021-10-06T14:05:34.903204Z, end-time: 2021-10-06T14:05:34.981579Z, duration: 0, exit-code: 0
cat docs/conf.py
#!/usr/bin/env python
# pylint: disable=wrong-import-position, unused-import, invalid-name
#
# quantify documentation build configuration file, created by
# sphinx-quickstart on Fri Jun  9 13:47:02 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another
# directory, add these directories to sys.path here. If the directory is
# relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here.
#
import os
import sys

package_path = os.path.abspath("..")
sys.path.insert(0, package_path)

# -- General configuration ---------------------------------------------
# pylint: disable=invalid-name

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
    "sphinx.ext.autodoc",  # auto document docstrings
    "sphinx.ext.napoleon",  # autodoc understands numpy docstrings
    # load after napoleon, improved compatibility with type hints annotations
    "sphinx_autodoc_typehints",
    "sphinx.ext.viewcode",
    "sphinx.ext.intersphinx",
    "sphinx.ext.autosectionlabel",
    "sphinx-jsonschema",
    "sphinx_rtd_theme",
    "sphinx.ext.mathjax",
    "sphinx.ext.todo",
    "sphinx-jsonschema",
    "jupyter_sphinx",
    "sphinx_togglebutton",
    # fancy type hints in docs and
    # solves the same issue as "sphinx_automodapi.smart_resolver"
    "scanpydoc.elegant_typehints",
    "sphinxcontrib.bibtex",
]

# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

intersphinx_mapping = {
    "python": ("https://docs.python.org/3", None),
    "qcodes": ("https://qcodes.github.io/Qcodes/", None),
    "xarray": ("https://xarray.pydata.org/en/stable/", None),
    "numpy": ("https://numpy.org/doc/stable/", None),
    "matplotlib": ("https://matplotlib.org/stable/", None),
    "lmfit": ("https://lmfit.github.io/lmfit-py/", None),
    "dateutil": ("https://dateutil.readthedocs.io/en/stable/", None),
    "jsonschema": ("https://python-jsonschema.readthedocs.io/en/stable/", None),
    "quantify-core": (
        "https://quantify-quantify-core.readthedocs-hosted.com/en/develop/",
        None,
    ),
    "scipy": ("https://docs.scipy.org/doc/scipy/reference/", None),
    "qblox-instruments": (
        "https://qblox-qblox-instruments.readthedocs-hosted.com/en/master/",
        None,
    ),
    "zhinst-toolkit": ("https://docs.zhinst.com/zhinst-toolkit/en/latest/", None),
    "zhinst-qcodes": ("https://docs.zhinst.com/zhinst-qcodes/en/latest/", None),
}

bibtex_bibfiles = ["refs.bib"]
bibtex_reference_style = "author_year"


# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = ".rst"

# The master toctree document.
master_doc = "index"

# General information about the project.
project = "Quantify-Scheduler"
copyright = "2020-2021, Qblox & Orange Quantum Systems"
author = "The Quantify consortium"


# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = "sphinx"

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True

# Document __init__ docstring together with class doctring (when __init__ is present)
napoleon_include_init_with_doc = True
# NB the line below could be used for a similar result
# BUT the line below ALWAYS includes the __init__ docstring even if it come from the
# parent class which is undesired for analysis subclasses, for example.
# autoclass_content = "both"


# -- Options for HTML output -------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = "sphinx_rtd_theme"

# Theme options are theme-specific and customize the look and feel of a
# theme further.  For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]
html_css_files = [
    "quantify_scheduler.css",
]


# -- Options for HTMLHelp output ---------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = "quantifydoc"

html_context = {
    "display_gitlab": True,
    "gitlab_user": "quantify-os",
    "gitlab_repo": "quantify-scheduler",
    "gitlab_version": "develop/docs/",
}

# -- Options for LaTeX output ------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',
    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',
    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',
    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass
# [howto, manual, or own class]).
latex_documents = [
    (
        master_doc,
        "quantify_scheduler.tex",
        "quantify Documentation",
        "Quantify Consortium ",
        "manual",
    ),
]


# -- Options for manual page output ------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [(master_doc, "quantify", "quantify Documentation", [author], 1)]


# -- Options for Texinfo output ----------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (
        master_doc,
        "Quantify-Scheduler",
        "Quantify-Scheduler Documentation",
        author,
        "Quantify-Scheduler",
        "One line description of project.",
        "Miscellaneous",
    ),
]

# -- Other Options -----------------------------------------------------

# avoid duplicate label warning even when manual label has been used
suppress_warnings = ["autosectionlabel.*"]


# used by scanpydoc.elegant_typehints to correctly link to external docs
qualname_overrides = {
    "matplotlib.axes._axes.Axes": "matplotlib.axes.Axes",
    "zhinst.qcodes.uhfqa.UHFQA": "zhinst.qcodes.UHFQA",
    "zhinst.qcodes.hdawg.HDAWG": "zhinst.qcodes.HDAWG",
}

numfig = True

autodoc_default_options = {
    "member-order": "groupwise",
}

# For debugging the CI just add `or True` on the line below
if os.environ.get("GITLAB_CI", "false") == "true":
    print(
        "\n[INFO] Building docs with private-members...\n[INFO] See `conf.py` for details.\n"
    )
    # for local build and CI force documentation to build for private members
    # this make sure the docstrings of private members are also correctly formatted, etc
    autodoc_default_options["private-members"] = True

# -- Options for auto documenting typehints ----------------------------

# Please see https://gitlab.com/quantify-os/quantify/-/issues/10 regarding

# below should be imported all "problematic" modules that might raise strange issues
# when building the docs
# e.g., to "partially initialized module", or "most likely due to a circular import"

# This is a practical solution. We tried fixing certain things upstream, e.g.:
# https://github.com/QCoDeS/Qcodes/pull/2909
# but the issues popped up again, so this is the best and easier solution so far

# qcodes imports scipy under the hood but since scipy=1.7.0 it needs to be imported
# here with typing.TYPE_CHECKING = True otherwise we run into quantify-core#
import lmfit  # related to quantify-core#218 and quantify-core#221
import qcodes
import marshmallow

# When building the docs we need `typing.TYPE_CHECKING` to be `True` so that the
# sphinx' kernel loads the modules corresponding to the typehints and is able to
# auto document types. The modules listed above create issues when loaded with
# `typing.TYPE_CHECKING = True` so we import them beforehand to avoid nasty issues.

# It is a good practice to make use of the following construct to import modules that
# are used for type hints ONLY! the construct is the following:

# if typing.TYPE_CHECKING:
#     import my_expensive_to_import_module as my_module

# NB if you run into any circular import issue it is because you are importing module
# member directly from a module, i.e.:

# if typing.TYPE_CHECKING:
#     from my_expensive_to_import_module import BlaClass # Potential circular import

set_type_checking_flag = True  # this will run `typing.TYPE_CHECKING = True`


# Enable nitpicky mode - which ensures that all references in the docs
# resolve.

nitpicky = True
nitpick_ignore = []

with open("nitpick-exceptions.txt") as nitpick_exceptions:
    for line in nitpick_exceptions:
        if line.strip() == "" or line.startswith("#"):
            continue
        dtype, target = line.split(None, 1)
        target = target.strip()
        nitpick_ignore.append((dtype, target))




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file shouldn't rely on extra dependencies.

import importlib
import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("master", "/en/master/"),
    ("latest", "/en/latest/"),
    ("stable", "/en/stable/"),
    ("develop", "/en/develop/"),
    ("0.1.0", "/en/0.1.0/"),
    ],
    'downloads': [ 
    ],
    'subprojects': [ 
    ],
    'slug': 'quantify-quantify-scheduler',
    'name': u'quantify-scheduler',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': 'https://quantify-quantify-scheduler.readthedocs-hosted.com/en/stable/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/docs/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'None',
    'proxied_api_host': '/_',
    'github_repo': 'None',
    'github_version': 'develop',
    'display_github': False,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'develop',
    'display_bitbucket': False,
    'gitlab_user': 'quantify-os',
    'gitlab_repo': 'quantify-scheduler',
    'gitlab_version': 'develop',
    'display_gitlab': True,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '8329ae26',
}

# For sphinx >=1.8 we can use html_baseurl to set the canonical URL.
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl
if version_info >= (1, 8):
    if not globals().get('html_baseurl'):
        html_baseurl = context['canonical_url']
    context['canonical_url'] = None





if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'None'
    readthedocs_build_url = 'https://readthedocs.com/projects/quantify-quantify-scheduler/builds/739206/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2021-10-06T14:05:35.102386Z, end-time: 2021-10-06T14:06:22.223913Z, duration: 47, exit-code: 0
python -m sphinx -T -E -b html -d _build/doctrees -D language=en . _build/html
Running Sphinx v3.5.4
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