Read the Docs build information
Build id: 717113
Project: quantify-quantify-scheduler
Version: latest
Commit: 5aa8dfc8e29e7821fcd2287c906560e7337ddd74
Date: 2021-09-08T13:46:45.690693Z
State: finished
Success: True


[rtd-command-info] start-time: 2021-09-08T13:46:47.218335Z, end-time: 2021-09-08T13:46:50.511000Z, duration: 3, exit-code: 0
git clone --no-single-branch --depth 50 git@gitlab.com:quantify-os/quantify-scheduler.git .
Cloning into '.'...
Warning: Permanently added 'gitlab.com,172.65.251.78' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2021-09-08T13:46:50.706926Z, end-time: 2021-09-08T13:46:50.876605Z, duration: 0, exit-code: 0
git checkout --force origin/develop
Note: checking out 'origin/develop'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 5aa8dfc Merge branch 'test_RTD_fix' into 'develop'

[rtd-command-info] start-time: 2021-09-08T13:46:50.988435Z, end-time: 2021-09-08T13:46:51.055950Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2021-09-08T13:46:52.124041Z, end-time: 2021-09-08T13:46:56.286324Z, duration: 4, exit-code: 0
python3.8 -mvirtualenv --system-site-packages 
Using base prefix '/home/docs/.pyenv/versions/3.8.6'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/latest/bin/python3.8
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2021-09-08T13:46:56.442740Z, end-time: 2021-09-08T13:46:57.587199Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
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[rtd-command-info] start-time: 2021-09-08T13:46:57.731973Z, end-time: 2021-09-08T13:47:24.409205Z, duration: 26, exit-code: 0
python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2
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Building wheels for collected packages: mock, pillow, future
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Successfully built mock pillow future
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, charset-normalizer, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible.
Successfully installed Jinja2-3.0.1 MarkupSafe-2.0.1 Pygments-2.10.0 alabaster-0.7.12 babel-2.9.1 certifi-2021.5.30 charset-normalizer-2.0.4 commonmark-0.8.1 docutils-0.17.1 future-0.18.2 idna-3.2 imagesize-1.2.0 mock-1.0.1 packaging-21.0 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.26.0 setuptools-58.0.3 six-1.16.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-1.26.6

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python -m pip install --exists-action=w --no-cache-dir -r requirements_dev.txt
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Installing collected packages: traitlets, pyrsistent, attrs, wcwidth, tornado, pyzmq, ptyprocess, parso, nest-asyncio, jupyter-core, jsonschema, ipython-genutils, entrypoints, webencodings, pygments, pycparser, prompt-toolkit, pickleshare, pexpect, nbformat, matplotlib-inline, jupyter-client, jedi, decorator, backcall, zipp, testpath, pandocfilters, nbclient, mistune, jupyterlab-pygments, IPython, defusedxml, debugpy, cffi, bleach, typing-extensions, terminado, Send2Trash, prometheus-client, nbconvert, natsort, msgpack, ipykernel, importlib-metadata, argon2-cffi, toml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, PyYAML, py, pluggy, notebook, lockfile, latexcodec, iniconfig, domdf-python-tools, docutils, deprecation, cachecontrol, appdirs, wrapt, widgetsnbextension, sphinx, soupsieve, ruamel.yaml.clib, pytest, pybtex, platformdirs, pillow, mistletoe, lazy-object-proxy, jupyterlab-widgets, filelock, dunamai, distlib, deprecation-alias, css-parser, commonmark, colorama, click, backports.entry-points-selectable, apeye, wheel, virtualenv, tqdm, tomli, tabulate, sphinx-tabs, sphinx-prompt, sphinx-autodoc-typehints, ruamel-yaml, rich, requests-toolbelt, regex, readme-renderer, pytest-forked, pybtex-docutils, pkginfo, pathtools, pathspec, nodeenv, mypy-extensions, mccabe, livereload, jsonpointer, isort, ipywidgets, identify, html5lib, get-version, execnet, dict2css, coverage, consolekit, cfgv, beautifulsoup4, autodocsumm, astroid, argh, watchdog, twine, sphinxcontrib-bibtex, sphinx-toolbox, sphinx-togglebutton, sphinx-rtd-theme, sphinx-jsonschema, sphinx-autobuild, scanpydoc, pytest-xdist, pytest-runner, pytest-mpl, pytest-mock, pytest-cov, pylint, pre-commit, jupyter-sphinx, enum-tools, bump2version, black
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Successfully installed IPython-7.27.0 PyYAML-5.4.1 Send2Trash-1.8.0 apeye-1.1.0 appdirs-1.4.4 argh-0.26.2 argon2-cffi-21.1.0 astroid-2.7.3 attrs-21.2.0 autodocsumm-0.2.2 backcall-0.2.0 backports.entry-points-selectable-1.1.0 beautifulsoup4-4.10.0 black-21.8b0 bleach-4.1.0 bump2version-0.5.11 cachecontrol-0.12.6 cffi-1.14.6 cfgv-3.3.1 click-8.0.1 colorama-0.4.4 commonmark-0.9.1 consolekit-1.3.0 coverage-5.5 css-parser-1.0.6 debugpy-1.4.1 decorator-5.0.9 defusedxml-0.7.1 deprecation-2.1.0 deprecation-alias-0.2.0 dict2css-0.2.4 distlib-0.3.2 docutils-0.16 domdf-python-tools-3.1.0 dunamai-1.6.0 entrypoints-0.3 enum-tools-0.6.4 execnet-1.9.0 filelock-3.0.12 get-version-3.5 html5lib-1.1 identify-2.2.13 importlib-metadata-4.8.1 iniconfig-1.1.1 ipykernel-6.3.1 ipython-genutils-0.2.0 ipywidgets-7.6.4 isort-5.9.3 jedi-0.18.0 jsonpointer-2.1 jsonschema-3.2.0 jupyter-client-7.0.2 jupyter-core-4.7.1 jupyter-sphinx-0.3.2 jupyterlab-pygments-0.1.2 jupyterlab-widgets-1.0.1 latexcodec-2.0.1 lazy-object-proxy-1.6.0 livereload-2.6.3 lockfile-0.12.2 matplotlib-inline-0.1.3 mccabe-0.6.1 mistletoe-0.7.2 mistune-0.8.4 msgpack-1.0.2 mypy-extensions-0.4.3 natsort-7.1.1 nbclient-0.5.4 nbconvert-6.1.0 nbformat-5.1.3 nest-asyncio-1.5.1 nodeenv-1.6.0 notebook-6.4.3 pandocfilters-1.4.3 parso-0.8.2 pathspec-0.9.0 pathtools-0.1.2 pexpect-4.8.0 pickleshare-0.7.5 pillow-8.3.2 pkginfo-1.7.1 platformdirs-2.3.0 pluggy-1.0.0 pre-commit-2.15.0 prometheus-client-0.11.0 prompt-toolkit-3.0.20 ptyprocess-0.7.0 py-1.10.0 pybtex-0.24.0 pybtex-docutils-1.0.1 pycparser-2.20 pygments-2.6.1 pylint-2.10.2 pyrsistent-0.18.0 pytest-6.2.5 pytest-cov-2.12.1 pytest-forked-1.3.0 pytest-mock-3.6.1 pytest-mpl-0.13 pytest-runner-5.3.1 pytest-xdist-2.3.0 pyzmq-22.2.1 readme-renderer-29.0 regex-2021.8.28 requests-toolbelt-0.9.1 rich-10.9.0 ruamel-yaml-0.17.16 ruamel.yaml.clib-0.2.6 scanpydoc-0.6 soupsieve-2.2.1 sphinx-4.0.3 sphinx-autobuild-2021.3.14 sphinx-autodoc-typehints-1.11.1 sphinx-jsonschema-1.16.11 sphinx-prompt-1.5.0 sphinx-rtd-theme-0.5.0rc2 sphinx-tabs-3.2.0 sphinx-togglebutton-0.2.3 sphinx-toolbox-2.14.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-bibtex-2.4.0 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 tabulate-0.8.9 terminado-0.12.1 testpath-0.5.0 toml-0.10.2 tomli-1.2.1 tornado-6.1 tqdm-4.62.2 traitlets-5.1.0 twine-1.14.0 typing-extensions-3.10.0.2 virtualenv-20.7.2 watchdog-0.9.0 wcwidth-0.2.5 webencodings-0.5.1 wheel-0.33.6 widgetsnbextension-3.5.1 wrapt-1.12.1 zipp-3.5.0

[rtd-command-info] start-time: 2021-09-08T13:47:55.102846Z, end-time: 2021-09-08T13:48:42.411041Z, duration: 47, exit-code: 0
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   pip 21.3 will remove support for this functionality. You can find discussion regarding this at https://github.com/pypa/pip/issues/7555.
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Installing collected packages: python-dateutil, pygments, pyasn1, rsa, pyasn1-modules, protobuf, cachetools, googleapis-common-protos, google-auth, opencensus-context, numpy, kiwisolver, google-api-core, contextlib2, sortedcontainers, schema, psutil, pandas, opencensus, matplotlib, h5py, cloudpickle, zhinst, xarray, websockets, uncertainties, sortedcollections, scipy, requirements-parser, pyvisa, pyserial, PyQt5-sip, PyQt5-Qt5, opencensus-ext-azure, marshmallow, loky, h5netcdf, broadbean, atomicwrites, asteval, zhinst-toolkit, xxhash, typing-inspect, toolz, tenacity, spirack, qcodes, pyqtgraph, pyqt5, marshmallow-enum, lmfit, directory-tree, appnope, adaptive, zhinst-qcodes, quantify-core, qblox-instruments, plotly, pathvalidate, dataclasses-json, columnar, quantify-scheduler
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Successfully installed PyQt5-Qt5-5.15.2 PyQt5-sip-12.9.0 adaptive-0.12.2 appnope-0.1.2 asteval-0.9.25 atomicwrites-1.4.0 broadbean-0.10.0 cachetools-4.2.2 cloudpickle-1.6.0 columnar-1.3.1 contextlib2-21.6.0 dataclasses-json-0.5.5 directory-tree-0.0.2 google-api-core-1.31.2 google-auth-1.35.0 googleapis-common-protos-1.53.0 h5netcdf-0.11.0 h5py-3.4.0 kiwisolver-1.3.2 lmfit-1.0.2 loky-2.9.0 marshmallow-3.13.0 marshmallow-enum-1.5.1 matplotlib-3.4.3 numpy-1.21.2 opencensus-0.7.13 opencensus-context-0.1.2 opencensus-ext-azure-1.0.8 pandas-1.3.2 pathvalidate-2.4.1 plotly-5.3.1 protobuf-3.17.3 psutil-5.8.0 pyasn1-0.4.8 pyasn1-modules-0.2.8 pygments-2.10.0 pyqt5-5.15.4 pyqtgraph-0.12.2 pyserial-3.5 python-dateutil-2.8.2 pyvisa-1.11.3 qblox-instruments-0.4.0 qcodes-0.28.0 quantify-core-0.5.0 quantify-scheduler-0.4.0 requirements-parser-0.2.0 rsa-4.7.2 schema-0.7.4 scipy-1.7.1 sortedcollections-2.1.0 sortedcontainers-2.4.0 spirack-0.2.4 tenacity-8.0.1 toolz-0.11.1 typing-inspect-0.7.1 uncertainties-3.1.6 websockets-9.1 xarray-0.19.0 xxhash-2.0.2 zhinst-21.8.20085 zhinst-qcodes-0.1.4 zhinst-toolkit-0.2.1

[rtd-command-info] start-time: 2021-09-08T13:48:43.805949Z, end-time: 2021-09-08T13:48:43.867353Z, duration: 0, exit-code: 0
cat docs/conf.py
#!/usr/bin/env python
# pylint: disable=wrong-import-position, unused-import, invalid-name
#
# quantify documentation build configuration file, created by
# sphinx-quickstart on Fri Jun  9 13:47:02 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another
# directory, add these directories to sys.path here. If the directory is
# relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here.
#
import os
import sys

package_path = os.path.abspath("..")
sys.path.insert(0, package_path)

# -- General configuration ---------------------------------------------
# pylint: disable=invalid-name

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
    "sphinx.ext.autodoc",  # auto document docstrings
    "sphinx.ext.napoleon",  # autodoc understands numpy docstrings
    # load after napoleon, improved compatibility with type hints annotations
    "sphinx_autodoc_typehints",
    "sphinx.ext.viewcode",
    "sphinx.ext.intersphinx",
    "sphinx.ext.autosectionlabel",
    "sphinx-jsonschema",
    "sphinx_rtd_theme",
    "sphinx.ext.mathjax",
    "sphinx.ext.todo",
    "sphinx-jsonschema",
    "jupyter_sphinx",
    "sphinx_togglebutton",
    # fancy type hints in docs and
    # solves the same issue as "sphinx_automodapi.smart_resolver"
    "scanpydoc.elegant_typehints",
    "sphinxcontrib.bibtex",
]

# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

intersphinx_mapping = {
    "python": ("https://docs.python.org/3", None),
    "qcodes": ("https://qcodes.github.io/Qcodes/", None),
    "xarray": ("https://xarray.pydata.org/en/stable/", None),
    "numpy": ("https://numpy.org/doc/stable/", None),
    "matplotlib": ("https://matplotlib.org/stable/", None),
    "lmfit": ("https://lmfit.github.io/lmfit-py/", None),
    "dateutil": ("https://dateutil.readthedocs.io/en/stable/", None),
    "jsonschema": ("https://python-jsonschema.readthedocs.io/en/stable/", None),
    "quantify-core": (
        "https://quantify-quantify-core.readthedocs-hosted.com/en/develop/",
        None,
    ),
    "scipy": ("https://docs.scipy.org/doc/scipy/reference/", None),
    "qblox-instruments": (
        "https://qblox-qblox-instruments.readthedocs-hosted.com/en/master/",
        None,
    ),
    "zhinst-toolkit": ("https://docs.zhinst.com/zhinst-toolkit/en/latest/", None),
    "zhinst-qcodes": ("https://docs.zhinst.com/zhinst-qcodes/en/latest/", None),
}

bibtex_bibfiles = ["refs.bib"]
bibtex_reference_style = "author_year"


# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = ".rst"

# The master toctree document.
master_doc = "index"

# General information about the project.
project = "Quantify-Scheduler"
copyright = "2020-2021, Qblox & Orange Quantum Systems"
author = "The Quantify consortium"


# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = "sphinx"

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True

# Document __init__ docstring together with class doctring (when __init__ is present)
napoleon_include_init_with_doc = True
# NB the line below could be used for a similar result
# BUT the line below ALWAYS includes the __init__ docstring even if it come from the
# parent class which is undesired for analysis subclasses, for example.
# autoclass_content = "both"


# -- Options for HTML output -------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = "sphinx_rtd_theme"

# Theme options are theme-specific and customize the look and feel of a
# theme further.  For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]
html_css_files = [
    "quantify_scheduler.css",
]


# -- Options for HTMLHelp output ---------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = "quantifydoc"


# -- Options for LaTeX output ------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',
    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',
    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',
    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass
# [howto, manual, or own class]).
latex_documents = [
    (
        master_doc,
        "quantify_scheduler.tex",
        "quantify Documentation",
        "Quantify Consortium ",
        "manual",
    ),
]


# -- Options for manual page output ------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [(master_doc, "quantify", "quantify Documentation", [author], 1)]


# -- Options for Texinfo output ----------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (
        master_doc,
        "Quantify-Scheduler",
        "Quantify-Scheduler Documentation",
        author,
        "Quantify-Scheduler",
        "One line description of project.",
        "Miscellaneous",
    ),
]

# -- Other Options -----------------------------------------------------

# avoid duplicate label warning even when manual label has been used
suppress_warnings = ["autosectionlabel.*"]


# used by scanpydoc.elegant_typehints to correctly link to external docs
qualname_overrides = {
    "matplotlib.axes._axes.Axes": "matplotlib.axes.Axes",
    "zhinst.qcodes.uhfqa.UHFQA": "zhinst.qcodes.UHFQA",
    "zhinst.qcodes.hdawg.HDAWG": "zhinst.qcodes.HDAWG",
}

numfig = True

autodoc_member_order = "groupwise"

# -- Options for auto documenting typehints ----------------------------

# Please see https://gitlab.com/quantify-os/quantify/-/issues/10 regarding

# below should be imported all "problematic" modules that might raise strange issues
# when building the docs
# e.g., to "partially initialized module", or "most likely due to a circular import"

# This is a practical solution. We tried fixing certain things upstream, e.g.:
# https://github.com/QCoDeS/Qcodes/pull/2909
# but the issues popped up again, so this is the best and easier solution so far

# qcodes imports scipy under the hood but since scipy=1.7.0 it needs to be imported
# here with typing.TYPE_CHECKING = True otherwise we run into quantify-core#
import lmfit  # related to quantify-core#218 and quantify-core#221
import qcodes
import marshmallow

# When building the docs we need `typing.TYPE_CHECKING` to be `True` so that the
# sphinx' kernel loads the modules corresponding to the typehints and is able to
# auto document types. The modules listed above create issues when loaded with
# `typing.TYPE_CHECKING = True` so we import them beforehand to avoid nasty issues.

# It is a good practice to make use of the following construct to import modules that
# are used for type hints ONLY! the construct is the following:

# if typing.TYPE_CHECKING:
#     import my_expensive_to_import_module as my_module

# NB if you run into any circular import issue it is because you are importing module
# member directly from a module, i.e.:

# if typing.TYPE_CHECKING:
#     from my_expensive_to_import_module import BlaClass # Potential circular import

set_type_checking_flag = True  # this will run `typing.TYPE_CHECKING = True`


# Enable nitpicky mode - which ensures that all references in the docs
# resolve.

nitpicky = True
nitpick_ignore = []

with open("nitpick-exceptions.txt") as nitpick_exceptions:
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#          auto-created readthedocs.org specific configuration            #
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#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file shouldn't rely on extra dependencies.

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import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

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if globals().get('websupport2_base_url', False):
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#Add project information to the template context.
context = {
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if version_info >= (1, 8):
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if 'html_context' in globals():
    
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else:
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# Add custom RTD extension
if 'extensions' in globals():
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    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
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# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'None'
    readthedocs_build_url = 'https://readthedocs.com/projects/quantify-quantify-scheduler/builds/717113/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
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japanese = any([
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elif japanese:
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# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2021-09-08T13:48:43.977163Z, end-time: 2021-09-08T13:49:28.306208Z, duration: 44, exit-code: 0
python -m sphinx -T -E -b html -d _build/doctrees -D language=en . _build/html
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generating indices... genindex py-modindex done
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