Read the Docs build information Build id: 601426 Project: institute-for-disease-modeling-covasim Version: latest Commit: 56058772c9f8d0feb14a3f69d65f621c26b9b043 Date: 2021-03-29T16:45:10.208680Z State: finished Success: False [rtd-command-info] start-time: 2021-03-29T16:49:10.512347Z, end-time: 2021-03-29T16:49:13.109155Z, duration: 2, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/covasim.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (RSA) to the list of known hosts. [rtd-command-info] start-time: 2021-03-29T16:49:13.256762Z, end-time: 2021-03-29T16:49:13.348094Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 5605877 Merge pull request #887 from amath-idm/rc2.1.1 [rtd-command-info] start-time: 2021-03-29T16:49:13.484719Z, end-time: 2021-03-29T16:49:13.560969Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2021-03-29T16:49:14.586867Z, end-time: 2021-03-29T16:49:19.023694Z, duration: 4, exit-code: 0 python3.8 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.8.6' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin/python3.8 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2021-03-29T16:49:19.152066Z, end-time: 2021-03-29T16:49:20.781257Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (21.0.1) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (54.2.0) [rtd-command-info] start-time: 2021-03-29T16:49:20.924450Z, end-time: 2021-03-29T16:49:49.655212Z, duration: 28, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1.tar.gz (16.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting docutils>=0.11 Downloading docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting requests Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB) Collecting packaging Downloading packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting setuptools Downloading setuptools-54.2.0-py3-none-any.whl (785 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting Pygments>=2.0 Downloading Pygments-2.8.1-py3-none-any.whl (983 kB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting pytz>=2015.7 Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp38-cp38-manylinux2010_x86_64.whl (32 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.4-py2.py3-none-any.whl (153 kB) Collecting chardet<5,>=3.0.2 Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Building wheels for collected packages: mock, pillow, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=6d4444a9e18fead996fe846cb40b02b7f290005057fb2c96b6619d984df50146 Stored in directory: /tmp/pip-ephem-wheel-cache-_90qdy8c/wheels/41/7c/21/90057f91c6ead7c77a90c52d6e85ca48bf82d8b0d3f8dfbb65 Building wheel for pillow (setup.py): started Building wheel for pillow (setup.py): finished with status 'done' Created wheel for pillow: filename=Pillow-5.4.1-cp38-cp38-linux_x86_64.whl size=1260054 sha256=48f61afc0eec81d8ea7f0fb3749527d5d9b164346b2ae551b2ec9c70b75e7237 Stored in directory: /tmp/pip-ephem-wheel-cache-_90qdy8c/wheels/5f/a8/6b/5b7b3f764d879214eb03570f74d2b086201eb514e6ffa68d6d Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=5b77f187d930282930403ad58636ef11180ded560de227815d9efc8be27b5f54 Stored in directory: /tmp/pip-ephem-wheel-cache-_90qdy8c/wheels/8e/70/28/3d6ccd6e315f65f245da085482a2e1c7d14b90b30f239e2cf4 Successfully built mock pillow future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.8.1 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.16 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.25.1 setuptools-54.2.0 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.4 [rtd-command-info] start-time: 2021-03-29T16:49:49.770948Z, end-time: 2021-03-29T16:50:11.745337Z, duration: 21, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting pytest Downloading pytest-6.2.2-py3-none-any.whl (280 kB) Requirement already satisfied: sphinx-rtd-theme in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from -r docs/requirements.txt (line 2)) (0.4.3) Collecting sphinxcontrib-napoleon Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from -r docs/requirements.txt (line 4)) (1.8.5) Collecting plantweb Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting ipykernel Downloading ipykernel-5.5.2-py3-none-any.whl (120 kB) Collecting nbsphinx Downloading nbsphinx-0.8.2-py3-none-any.whl (24 kB) Collecting pandoc Downloading pandoc-1.0.2.tar.gz (488 kB) Collecting pypandoc Downloading pypandoc-1.5.tar.gz (26 kB) Collecting optuna Downloading optuna-2.6.0-py3-none-any.whl (293 kB) Collecting numba==0.48 Downloading numba-0.48.0-1-cp38-cp38-manylinux2014_x86_64.whl (3.6 MB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from numba==0.48->-r docs/requirements.txt (line 11)) (54.2.0) Collecting llvmlite<0.32.0,>=0.31.0dev0 Downloading llvmlite-0.31.0-cp38-cp38-manylinux1_x86_64.whl (20.2 MB) Requirement already satisfied: numpy>=1.15 in /home/docs/.pyenv/versions/3.8.6/lib/python3.8/site-packages (from numba==0.48->-r docs/requirements.txt (line 11)) (1.19.2) Collecting tornado>=4.2 Downloading tornado-6.1-cp38-cp38-manylinux2010_x86_64.whl (427 kB) Collecting traitlets>=4.1.0 Downloading traitlets-5.0.5-py3-none-any.whl (100 kB) Collecting ipython>=5.0.0 Downloading ipython-7.22.0-py3-none-any.whl (785 kB) Collecting jupyter-client Downloading jupyter_client-6.1.12-py3-none-any.whl (112 kB) Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 Downloading prompt_toolkit-3.0.18-py3-none-any.whl (367 kB) Collecting pickleshare Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) Collecting decorator Downloading decorator-4.4.2-py2.py3-none-any.whl (9.2 kB) Collecting pexpect>4.3 Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB) Requirement already satisfied: pygments in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from ipython>=5.0.0->ipykernel->-r docs/requirements.txt (line 6)) (2.8.1) Collecting backcall Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB) Collecting jedi>=0.16 Downloading jedi-0.18.0-py2.py3-none-any.whl (1.4 MB) Collecting parso<0.9.0,>=0.8.0 Downloading parso-0.8.1-py2.py3-none-any.whl (93 kB) Collecting ptyprocess>=0.5 Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Collecting wcwidth Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB) Collecting ipython-genutils Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB) Collecting nbconvert!=5.4 Downloading nbconvert-6.0.7-py3-none-any.whl (552 kB) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from nbsphinx->-r docs/requirements.txt (line 7)) (0.16) Requirement already satisfied: jinja2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from nbsphinx->-r docs/requirements.txt (line 7)) (2.11.3) Collecting nbformat Downloading nbformat-5.1.2-py3-none-any.whl (113 kB) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (2.9.0) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (1.15.0) Requirement already satisfied: requests>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (2.25.1) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (20.9) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (1.2.4) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (2.1.0) Requirement 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entrypoints-0.3-py2.py3-none-any.whl (11 kB) Collecting jupyter-core Downloading jupyter_core-4.7.1-py3-none-any.whl (82 kB) Collecting testpath Downloading testpath-0.4.4-py2.py3-none-any.whl (163 kB) Collecting pandocfilters>=1.4.1 Downloading pandocfilters-1.4.3.tar.gz (16 kB) Collecting mistune<2,>=0.8.1 Downloading mistune-0.8.4-py2.py3-none-any.whl (16 kB) Collecting jupyterlab-pygments Downloading jupyterlab_pygments-0.1.2-py2.py3-none-any.whl (4.6 kB) Collecting bleach Downloading bleach-3.3.0-py2.py3-none-any.whl (283 kB) Collecting defusedxml Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Collecting nbclient<0.6.0,>=0.5.0 Downloading nbclient-0.5.3-py3-none-any.whl (82 kB) Collecting async-generator Downloading async_generator-1.10-py3-none-any.whl (18 kB) Collecting nest-asyncio Downloading nest_asyncio-1.5.1-py3-none-any.whl (5.0 kB) Requirement already satisfied: python-dateutil>=2.1 in /home/docs/.pyenv/versions/3.8.6/lib/python3.8/site-packages (from jupyter-client->ipykernel->-r docs/requirements.txt (line 6)) (2.8.1) Collecting pyzmq>=13 Downloading pyzmq-22.0.3-cp38-cp38-manylinux2010_x86_64.whl (1.1 MB) Collecting jsonschema!=2.5.0,>=2.4 Downloading jsonschema-3.2.0-py2.py3-none-any.whl (56 kB) Collecting attrs>=17.4.0 Downloading attrs-20.3.0-py2.py3-none-any.whl (49 kB) Collecting pyrsistent>=0.14.0 Downloading pyrsistent-0.17.3.tar.gz (106 kB) Requirement already satisfied: chardet<5,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from requests>=2.0.0->sphinx->-r docs/requirements.txt (line 4)) (4.0.0) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from requests>=2.0.0->sphinx->-r docs/requirements.txt (line 4)) (2.10) Requirement already satisfied: urllib3<1.27,>=1.21.1 in 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cliff-3.7.0-py3-none-any.whl (80 kB) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from packaging->sphinx->-r docs/requirements.txt (line 4)) (2.4.7) Collecting greenlet!=0.4.17 Downloading greenlet-1.0.0-cp38-cp38-manylinux2010_x86_64.whl (165 kB) Collecting ply Downloading ply-3.11-py2.py3-none-any.whl (49 kB) Requirement already satisfied: pip>=8.1.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from pypandoc->-r docs/requirements.txt (line 9)) (21.0.1) Requirement already satisfied: wheel>=0.25.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from pypandoc->-r docs/requirements.txt (line 9)) (0.36.2) Collecting toml Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB) Collecting iniconfig Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB) Collecting pluggy<1.0.0a1,>=0.12 Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting py>=1.8.2 Downloading py-1.10.0-py2.py3-none-any.whl (97 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting python-editor>=0.3 Downloading python_editor-1.0.4-py3-none-any.whl (4.9 kB) Collecting Mako Downloading Mako-1.1.4-py2.py3-none-any.whl (75 kB) Collecting webencodings Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting cmd2>=1.0.0 Downloading cmd2-1.5.0-py3-none-any.whl (133 kB) Collecting PrettyTable>=0.7.2 Downloading prettytable-2.1.0-py3-none-any.whl (22 kB) Collecting pbr!=2.1.0,>=2.0.0 Downloading pbr-5.5.1-py2.py3-none-any.whl (106 kB) Collecting stevedore>=2.0.1 Downloading stevedore-3.3.0-py3-none-any.whl (49 kB) Collecting PyYAML>=3.12 Downloading PyYAML-5.4.1-cp38-cp38-manylinux1_x86_64.whl (662 kB) Collecting pyperclip>=1.6 Downloading pyperclip-1.8.2.tar.gz (20 kB) Collecting colorama>=0.3.7 Downloading colorama-0.4.4-py2.py3-none-any.whl (16 kB) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages (from sphinxcontrib-websupport->sphinx->-r docs/requirements.txt (line 4)) (1.1.4) Building wheels for collected packages: pandocfilters, pyrsistent, pandoc, pypandoc, pyperclip Building wheel for pandocfilters (setup.py): started Building wheel for pandocfilters (setup.py): finished with status 'done' Created wheel for pandocfilters: filename=pandocfilters-1.4.3-py3-none-any.whl size=7992 sha256=75d6d4a71546f913be63edfb65563597e5a6a3fa3e192f72ac4bed2ca87e3c58 Stored in directory: /tmp/pip-ephem-wheel-cache-ha9e4ye1/wheels/fc/39/52/8d6f3cec1cca4ceb44d658427c35711b19d89dbc4914af657f Building wheel for pyrsistent (setup.py): started Building wheel for pyrsistent (setup.py): finished with status 'done' Created wheel for pyrsistent: filename=pyrsistent-0.17.3-cp38-cp38-linux_x86_64.whl size=119674 sha256=65fa188a11bec756f8372bf176aecbb5bfc7a472c4942f73d8a61b57806a18e8 Stored in directory: /tmp/pip-ephem-wheel-cache-ha9e4ye1/wheels/3d/22/08/7042eb6309c650c7b53615d5df5cc61f1ea9680e7edd3a08d2 Building wheel for pandoc (setup.py): started Building wheel for pandoc (setup.py): finished with status 'done' Created wheel for pandoc: filename=pandoc-1.0.2-py3-none-any.whl size=19992 sha256=a8b67365b07204c26b0a9730a531217e8104d25c6abdaa6f0a378af86bb7eea2 Stored in directory: /tmp/pip-ephem-wheel-cache-ha9e4ye1/wheels/a4/b9/34/3e82b9444401c2199d721240a388499a262d2e2ad37f6f3fa7 Building wheel for pypandoc (setup.py): started Building wheel for pypandoc (setup.py): finished with status 'done' Created wheel for pypandoc: filename=pypandoc-1.5-py3-none-any.whl size=17037 sha256=77fea187cbfd0003933971de58aa9b292b5e728997b50beca068a2f6234cfe81 Stored in directory: /tmp/pip-ephem-wheel-cache-ha9e4ye1/wheels/27/01/d8/dde8d4ae5c2a6e6dda11cee8c4fb855c9f60f1f8cdc1332cef Building wheel for pyperclip (setup.py): started Building wheel for pyperclip (setup.py): finished with status 'done' Created wheel for pyperclip: filename=pyperclip-1.8.2-py3-none-any.whl size=11107 sha256=04d73c9adbd415020f4525d239715d309774ce28825c0bccbeadfb230cc7029a Stored in directory: /tmp/pip-ephem-wheel-cache-ha9e4ye1/wheels/7f/1a/65/84ff8c386bec21fca6d220ea1f5498a0367883a78dd5ba6122 Successfully built pandocfilters pyrsistent pandoc pypandoc pyperclip Installing collected packages: ipython-genutils, traitlets, pyrsistent, attrs, tornado, pyzmq, jupyter-core, jsonschema, webencodings, wcwidth, pyperclip, ptyprocess, pbr, parso, nest-asyncio, nbformat, jupyter-client, greenlet, colorama, async-generator, testpath, stevedore, sqlalchemy, PyYAML, python-editor, prompt-toolkit, PrettyTable, pickleshare, pexpect, pandocfilters, nbclient, mistune, Mako, jupyterlab-pygments, jedi, entrypoints, defusedxml, decorator, cmd2, bleach, backcall, tqdm, toml, scipy, py, pockets, ply, pluggy, nbconvert, llvmlite, ipython, iniconfig, colorlog, cmaes, cliff, alembic, sphinxcontrib-napoleon, pytest, pypandoc, plantweb, pandoc, optuna, numba, nbsphinx, ipykernel Successfully installed Mako-1.1.4 PrettyTable-2.1.0 PyYAML-5.4.1 alembic-1.5.8 async-generator-1.10 attrs-20.3.0 backcall-0.2.0 bleach-3.3.0 cliff-3.7.0 cmaes-0.8.2 cmd2-1.5.0 colorama-0.4.4 colorlog-4.8.0 decorator-4.4.2 defusedxml-0.7.1 entrypoints-0.3 greenlet-1.0.0 iniconfig-1.1.1 ipykernel-5.5.2 ipython-7.22.0 ipython-genutils-0.2.0 jedi-0.18.0 jsonschema-3.2.0 jupyter-client-6.1.12 jupyter-core-4.7.1 jupyterlab-pygments-0.1.2 llvmlite-0.31.0 mistune-0.8.4 nbclient-0.5.3 nbconvert-6.0.7 nbformat-5.1.2 nbsphinx-0.8.2 nest-asyncio-1.5.1 numba-0.48.0 optuna-2.6.0 pandoc-1.0.2 pandocfilters-1.4.3 parso-0.8.1 pbr-5.5.1 pexpect-4.8.0 pickleshare-0.7.5 plantweb-1.2.1 pluggy-0.13.1 ply-3.11 pockets-0.9.1 prompt-toolkit-3.0.18 ptyprocess-0.7.0 py-1.10.0 pypandoc-1.5 pyperclip-1.8.2 pyrsistent-0.17.3 pytest-6.2.2 python-editor-1.0.4 pyzmq-22.0.3 scipy-1.6.2 sphinxcontrib-napoleon-0.7 sqlalchemy-1.4.3 stevedore-3.3.0 testpath-0.4.4 toml-0.10.2 tornado-6.1 tqdm-4.59.0 traitlets-5.0.5 wcwidth-0.2.5 webencodings-0.5.1 [rtd-command-info] start-time: 2021-03-29T16:50:11.920581Z, end-time: 2021-03-29T16:50:16.217400Z, duration: 4, exit-code: 1 python ./setup.py install --force running install running bdist_egg running egg_info creating covasim.egg-info writing covasim.egg-info/PKG-INFO writing dependency_links to covasim.egg-info/dependency_links.txt writing requirements to covasim.egg-info/requires.txt writing top-level names to covasim.egg-info/top_level.txt writing manifest file 'covasim.egg-info/SOURCES.txt' reading manifest file 'covasim.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'covasim.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/covasim copying covasim/interventions.py -> build/lib/covasim copying covasim/utils.py -> build/lib/covasim copying covasim/parameters.py -> build/lib/covasim copying covasim/settings.py -> build/lib/covasim copying covasim/population.py -> build/lib/covasim copying covasim/version.py -> build/lib/covasim copying covasim/people.py -> build/lib/covasim copying covasim/analysis.py -> build/lib/covasim copying covasim/misc.py -> build/lib/covasim copying covasim/plotting.py -> build/lib/covasim copying covasim/base.py -> build/lib/covasim copying covasim/defaults.py -> build/lib/covasim copying covasim/run.py -> build/lib/covasim copying covasim/sim.py -> build/lib/covasim copying covasim/requirements.py -> build/lib/covasim copying covasim/__init__.py -> build/lib/covasim creating build/lib/covasim/data copying covasim/data/household_size_data.py -> build/lib/covasim/data copying covasim/data/state_age_data.py -> build/lib/covasim/data copying covasim/data/loaders.py -> build/lib/covasim/data copying covasim/data/country_age_data.py -> build/lib/covasim/data copying covasim/data/__init__.py -> build/lib/covasim/data copying covasim/README.rst -> build/lib/covasim creating build/lib/covasim/regression copying covasim/regression/README.rst -> build/lib/covasim/regression copying covasim/regression/pars_v0.30.4.json -> build/lib/covasim/regression copying covasim/regression/pars_v0.31.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v0.32.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.0.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.0.1.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.1.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.1.1.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.1.3.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.2.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.3.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.4.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v1.5.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v2.0.0.json -> build/lib/covasim/regression copying covasim/regression/pars_v2.1.1.json -> build/lib/covasim/regression creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/interventions.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/utils.py -> build/bdist.linux-x86_64/egg/covasim creating build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/household_size_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/state_age_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/loaders.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/country_age_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/__init__.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/parameters.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/settings.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/population.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/version.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/people.py -> build/bdist.linux-x86_64/egg/covasim creating build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.5.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v0.31.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.0.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.1.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v2.0.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.0.1.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.1.1.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.4.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v2.1.1.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.1.3.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.3.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v1.2.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v0.32.0.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/README.rst -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/regression/pars_v0.30.4.json -> build/bdist.linux-x86_64/egg/covasim/regression copying build/lib/covasim/analysis.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/misc.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/plotting.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/base.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/defaults.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/run.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/README.rst -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/sim.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/requirements.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/__init__.py -> build/bdist.linux-x86_64/egg/covasim byte-compiling build/bdist.linux-x86_64/egg/covasim/interventions.py to interventions.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/utils.py to utils.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/household_size_data.py to household_size_data.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/state_age_data.py to state_age_data.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/loaders.py to loaders.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/country_age_data.py to country_age_data.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/__init__.py to __init__.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/parameters.py to parameters.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/settings.py to settings.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/population.py to population.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/version.py to version.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/people.py to people.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/analysis.py to analysis.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/misc.py to misc.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/plotting.py to plotting.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/base.py to base.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/defaults.py to defaults.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/run.py to run.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/sim.py to sim.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/requirements.py to requirements.cpython-38.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/__init__.py to __init__.cpython-38.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... covasim.__pycache__.interventions.cpython-38: module MAY be using inspect.getouterframes covasim.__pycache__.misc.cpython-38: module references __file__ creating dist creating 'dist/covasim-2.1.1-py3.8.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing covasim-2.1.1-py3.8.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/covasim-2.1.1-py3.8.egg Extracting covasim-2.1.1-py3.8.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding covasim 2.1.1 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/covasim-2.1.1-py3.8.egg Processing dependencies for covasim==2.1.1 Searching for sciris>=1.0.0 Reading https://pypi.org/simple/sciris/ Downloading https://files.pythonhosted.org/packages/a5/8d/bf0545ef25a10d52c78f1aa08548eab729ce967fe2f782d6315f5454d5a1/sciris-1.1.1-py3-none-any.whl#sha256=a344f9d185aef89912e029d5f0236ceeb9cf59642325f9516469de1e2da4ba6b Best match: sciris 1.1.1 Processing sciris-1.1.1-py3-none-any.whl Installing sciris-1.1.1-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding sciris 1.1.1 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/sciris-1.1.1-py3.8.egg Searching for xlrd==1.2.0 Reading https://pypi.org/simple/xlrd/ Downloading https://files.pythonhosted.org/packages/b0/16/63576a1a001752e34bf8ea62e367997530dc553b689356b9879339cf45a4/xlrd-1.2.0-py2.py3-none-any.whl#sha256=e551fb498759fa3a5384a94ccd4c3c02eb7c00ea424426e212ac0c57be9dfbde Best match: xlrd 1.2.0 Processing xlrd-1.2.0-py2.py3-none-any.whl Installing xlrd-1.2.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding xlrd 1.2.0 to easy-install.pth file Installing runxlrd.py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/xlrd-1.2.0-py3.8.egg Searching for statsmodels Reading https://pypi.org/simple/statsmodels/ Downloading https://files.pythonhosted.org/packages/bc/75/95096c520c34169244e5a3b488e282acae2c2aece99909d57dee45360c82/statsmodels-0.12.2-cp38-cp38-manylinux1_x86_64.whl#sha256=587deb788e7f8f3f866d28e812cf5c082b4d4a2d3f5beea94d0e9699ea71ef22 Best match: statsmodels 0.12.2 Processing statsmodels-0.12.2-cp38-cp38-manylinux1_x86_64.whl Installing statsmodels-0.12.2-cp38-cp38-manylinux1_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding statsmodels 0.12.2 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/statsmodels-0.12.2-py3.8-linux-x86_64.egg Searching for xlsxwriter Reading https://pypi.org/simple/xlsxwriter/ Downloading https://files.pythonhosted.org/packages/6b/41/bf1aae04932d1eaffee1fc5f8b38ca47bbbf07d765129539bc4bcce1ce0c/XlsxWriter-1.3.7-py2.py3-none-any.whl#sha256=b807c2d3e379bf6a925f472955beef3e07495c1bac708640696876e68675b49b Best match: XlsxWriter 1.3.7 Processing XlsxWriter-1.3.7-py2.py3-none-any.whl Installing XlsxWriter-1.3.7-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding XlsxWriter 1.3.7 to easy-install.pth file Installing vba_extract.py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/XlsxWriter-1.3.7-py3.8.egg Searching for psutil Reading https://pypi.org/simple/psutil/ Downloading https://files.pythonhosted.org/packages/3b/c2/78109a12da9febb2f965abf29da6f81b0a3f2b89a7b59d88b759e68dc6db/psutil-5.8.0-cp38-cp38-manylinux2010_x86_64.whl#sha256=28ff7c95293ae74bf1ca1a79e8805fcde005c18a122ca983abf676ea3466362b Best match: psutil 5.8.0 Processing psutil-5.8.0-cp38-cp38-manylinux2010_x86_64.whl Installing psutil-5.8.0-cp38-cp38-manylinux2010_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding psutil 5.8.0 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/psutil-5.8.0-py3.8-linux-x86_64.egg Searching for openpyexcel>=2.5 Reading https://pypi.org/simple/openpyexcel/ Downloading https://files.pythonhosted.org/packages/32/e1/722047fae7a46b658d7fa038cf5b952fbbb150c3c8a31012e4fb76eba27d/openpyexcel-2.5.14-py2.py3-none-any.whl#sha256=f18f4efadbc25a26870885f342e14b6cd6862ca1f4b8195b394fc2681ccdbaab Best match: openpyexcel 2.5.14 Processing openpyexcel-2.5.14-py2.py3-none-any.whl Installing openpyexcel-2.5.14-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding openpyexcel 2.5.14 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/openpyexcel-2.5.14-py3.8.egg Searching for multiprocess Reading https://pypi.org/simple/multiprocess/ Downloading https://files.pythonhosted.org/packages/db/20/458ac043a57322365ac2ed86a911bf7598fc2e49bccb3f94ea810fbb6b9b/multiprocess-0.70.11.1-py37-none-any.whl#sha256=164c77448e357ebee0dc6abc7ee8c823e40e295e629a5fc6d31725109a3a7ee9 Best match: multiprocess 0.70.11.1 Processing multiprocess-0.70.11.1-py37-none-any.whl Installing multiprocess-0.70.11.1-py37-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding multiprocess 0.70.11.1 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/multiprocess-0.70.11.1-py3.8.egg Searching for memory-profiler Reading https://pypi.org/simple/memory-profiler/ Downloading https://files.pythonhosted.org/packages/8f/fd/d92b3295657f8837e0177e7b48b32d6651436f0293af42b76d134c3bb489/memory_profiler-0.58.0.tar.gz#sha256=01385ac0fec944fcf7969814ec4406c6d8a9c66c079d09276723c5a7680f44e5 Best match: memory-profiler 0.58.0 Processing memory_profiler-0.58.0.tar.gz Writing /tmp/easy_install-81dpu5nl/memory_profiler-0.58.0/setup.cfg Running memory_profiler-0.58.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-81dpu5nl/memory_profiler-0.58.0/egg-dist-tmp-e3d6emkg warning: no files found matching 'mprof.bat' build/bdist.linux-x86_64/egg/mprof.py:76: SyntaxWarning: "is" with a literal. Did you mean "=="? if args is "all": zip_safe flag not set; analyzing archive contents... __pycache__.memory_profiler.cpython-38: module MAY be using inspect.getsourcefile __pycache__.memory_profiler.cpython-38: module MAY be using inspect.stack __pycache__.memory_profiler.cpython-38: module MAY be using inspect.trace creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/memory_profiler-0.58.0-py3.8.egg Extracting memory_profiler-0.58.0-py3.8.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages Adding memory-profiler 0.58.0 to easy-install.pth file Installing mprof script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/memory_profiler-0.58.0-py3.8.egg Searching for line-profiler Reading https://pypi.org/simple/line-profiler/ Downloading https://files.pythonhosted.org/packages/80/fc/87235848376bf59686364208269423fd523f979deffd6b73085629d6fdbf/line_profiler-3.2.0.tar.gz#sha256=113a17d4023eff3008c807d895dec11f9ad872986edd0816fa523ecdeffe7bf8 Best match: line-profiler 3.2.0 Processing line_profiler-3.2.0.tar.gz Writing /tmp/easy_install-yrfrcsip/line_profiler-3.2.0/setup.cfg Running line_profiler-3.2.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-yrfrcsip/line_profiler-3.2.0/egg-dist-tmp-y8x2ny_1 /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/memory_profiler-0.58.0-py3.8.egg/mprof.py:76: SyntaxWarning: "is" with a literal. Did you mean "=="? if args is "all": Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 152, in save_modules yield saved File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 193, in setup_context yield File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 254, in run_setup _execfile(setup_script, ns) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 43, in _execfile exec(code, globals, locals) File "/tmp/easy_install-yrfrcsip/line_profiler-3.2.0/setup.py", line 215, in ModuleNotFoundError: No module named 'skbuild' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "./setup.py", line 49, in setup( File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/__init__.py", line 153, in setup return distutils.core.setup(**attrs) File "/home/docs/.pyenv/versions/3.8.6/lib/python3.8/distutils/core.py", line 148, in setup dist.run_commands() File "/home/docs/.pyenv/versions/3.8.6/lib/python3.8/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/home/docs/.pyenv/versions/3.8.6/lib/python3.8/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/install.py", line 117, in do_egg_install cmd.run(show_deprecation=False) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 408, in run self.easy_install(spec, not self.no_deps) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 650, in easy_install return self.install_item(None, spec, tmpdir, deps, True) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 697, in install_item self.process_distribution(spec, dist, deps) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 744, in process_distribution distros = WorkingSet([]).resolve( File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/pkg_resources/__init__.py", line 766, in resolve dist = best[req.key] = env.best_match( File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1051, in best_match return self.obtain(req, installer) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1063, in obtain return installer(requirement) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 669, in easy_install return self.install_item(spec, dist.location, tmpdir, deps) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 695, in install_item dists = self.install_eggs(spec, download, tmpdir) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 890, in install_eggs return self.build_and_install(setup_script, setup_base) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 1162, in build_and_install self.run_setup(setup_script, setup_base, args) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/command/easy_install.py", line 1146, in run_setup run_setup(setup_script, args) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 257, in run_setup raise File "/home/docs/.pyenv/versions/3.8.6/lib/python3.8/contextlib.py", line 131, in __exit__ self.gen.throw(type, value, traceback) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 193, in setup_context yield File "/home/docs/.pyenv/versions/3.8.6/lib/python3.8/contextlib.py", line 131, in __exit__ self.gen.throw(type, value, traceback) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 164, in save_modules saved_exc.resume() File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 139, in resume raise exc.with_traceback(self._tb) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 152, in save_modules yield saved File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 193, in setup_context yield File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 254, in run_setup _execfile(setup_script, ns) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.8/site-packages/setuptools/sandbox.py", line 43, in _execfile exec(code, globals, locals) File "/tmp/easy_install-yrfrcsip/line_profiler-3.2.0/setup.py", line 215, in ModuleNotFoundError: No module named 'skbuild'