Read the Docs build information
Build id: 600417
Project: institute-for-disease-modeling-synthpops-test
Version: latest
Commit: 5b32ec618ef9e6e4a4ac774d37b60834384dc7c7
Date: 2021-03-26T18:30:29.032522Z
State: finished
Success: False


[rtd-command-info] start-time: 2021-03-26T18:30:30.526434Z, end-time: 2021-03-26T18:30:38.215342Z, duration: 7, exit-code: 0
git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/synthpops.git .
Cloning into '.'...
Warning: Permanently added 'github.com,192.30.255.112' (RSA) to the list of known hosts.

[rtd-command-info] start-time: 2021-03-26T18:30:38.377841Z, end-time: 2021-03-26T18:30:38.621195Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: checking out 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 5b32ec6 Merge pull request #373 from amath-idm/fix-testschoolparams-3

[rtd-command-info] start-time: 2021-03-26T18:30:38.785685Z, end-time: 2021-03-26T18:30:38.868083Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2021-03-26T18:30:39.919173Z, end-time: 2021-03-26T18:30:43.977246Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv --system-site-packages 
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2021-03-26T18:30:44.116992Z, end-time: 2021-03-26T18:30:45.770680Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (21.0.1)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (54.2.0)

[rtd-command-info] start-time: 2021-03-26T18:30:45.927828Z, end-time: 2021-03-26T18:30:56.253777Z, duration: 10, exit-code: 0
python -m pip install --upgrade --no-cache-dir -I mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2
Collecting mock==1.0.1
  Downloading mock-1.0.1.zip (861 kB)
Collecting pillow==5.4.1
  Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB)
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB)
Collecting commonmark==0.8.1
  Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB)
Collecting recommonmark==0.5.0
  Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB)
Collecting sphinx<2
  Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB)
Collecting sphinx-rtd-theme<0.5
  Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB)
Collecting readthedocs-sphinx-ext<2.2
  Downloading readthedocs_sphinx_ext-2.1.4-py2.py3-none-any.whl (29 kB)
Collecting future
  Downloading future-0.18.2.tar.gz (829 kB)
Collecting docutils>=0.11
  Downloading docutils-0.16-py2.py3-none-any.whl (548 kB)
Collecting requests
  Downloading requests-2.25.1-py2.py3-none-any.whl (61 kB)
Collecting Jinja2>=2.9
  Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB)
Collecting imagesize
  Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB)
Collecting six>=1.5
  Downloading six-1.15.0-py2.py3-none-any.whl (10 kB)
Collecting sphinxcontrib-websupport
  Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB)
Collecting Pygments>=2.0
  Downloading Pygments-2.8.1-py3-none-any.whl (983 kB)
Collecting babel!=2.0,>=1.3
  Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB)
Collecting setuptools
  Downloading setuptools-54.2.0-py3-none-any.whl (785 kB)
Collecting packaging
  Downloading packaging-20.9-py2.py3-none-any.whl (40 kB)
Collecting snowballstemmer>=1.1
  Downloading snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB)
Collecting pytz>=2015.7
  Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB)
Collecting MarkupSafe>=0.23
  Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux2010_x86_64.whl (33 kB)
Collecting certifi>=2017.4.17
  Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB)
Collecting chardet<5,>=3.0.2
  Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB)
Collecting idna<3,>=2.5
  Downloading idna-2.10-py2.py3-none-any.whl (58 kB)
Collecting urllib3<1.27,>=1.21.1
  Downloading urllib3-1.26.4-py2.py3-none-any.whl (153 kB)
Collecting pyparsing>=2.0.2
  Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB)
Collecting sphinxcontrib-serializinghtml
  Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB)
Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
  Building wheel for mock (setup.py): finished with status 'done'
  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23755 sha256=3591a1cb2e49941a5aedf9c2b595c192ba6a921c2691f40c4732f6c2a69cf280
  Stored in directory: /tmp/pip-ephem-wheel-cache-e6n1ltqu/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1
  Building wheel for future (setup.py): started
  Building wheel for future (setup.py): finished with status 'done'
  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=0b8939279eef5dbaf99c90c40f3b66d82519ad5499cc87f27a17e101565b0c6c
  Stored in directory: /tmp/pip-ephem-wheel-cache-e6n1ltqu/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built mock future
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible.
Successfully installed Jinja2-2.11.3 MarkupSafe-1.1.1 Pygments-2.8.1 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-4.0.0 commonmark-0.8.1 docutils-0.16 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.9 pillow-5.4.1 pyparsing-2.4.7 pytz-2021.1 readthedocs-sphinx-ext-2.1.4 recommonmark-0.5.0 requests-2.25.1 setuptools-54.2.0 six-1.15.0 snowballstemmer-2.1.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.4

[rtd-command-info] start-time: 2021-03-26T18:30:56.373129Z, end-time: 2021-03-26T18:31:03.349011Z, duration: 6, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Collecting sphinx-rtd-theme~=0.5.0
  Downloading sphinx_rtd_theme-0.5.1-py2.py3-none-any.whl (2.8 MB)
Collecting sphinxcontrib-napoleon~=0.7
  Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB)
Collecting sphinx~=3.2.0
  Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB)
Collecting plantweb~=1.2.1
  Downloading plantweb-1.2.1-py3-none-any.whl (20 kB)
Collecting pytest
  Downloading pytest-6.2.2-py3-none-any.whl (280 kB)
Collecting numba==0.48.0
  Downloading numba-0.48.0-1-cp37-cp37m-manylinux2014_x86_64.whl (3.5 MB)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from numba==0.48.0->-r docs/requirements.txt (line 6)) (54.2.0)
Collecting llvmlite<0.32.0,>=0.31.0dev0
  Downloading llvmlite-0.31.0-cp37-cp37m-manylinux1_x86_64.whl (20.2 MB)
Requirement already satisfied: numpy>=1.15 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from numba==0.48.0->-r docs/requirements.txt (line 6)) (1.19.2)
Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (1.15.0)
Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (0.16)
Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (2.25.1)
Collecting sphinxcontrib-qthelp
  Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB)
Collecting sphinxcontrib-jsmath
  Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.9.0)
Collecting sphinxcontrib-applehelp
  Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB)
Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (0.7.12)
Collecting sphinxcontrib-devhelp
  Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB)
Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.1.0)
Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.8.1)
Collecting sphinxcontrib-htmlhelp
  Downloading sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB)
Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (1.1.4)
Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.11.3)
Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (1.2.0)
Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (20.9)
Collecting pockets>=0.3
  Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB)
Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2021.1)
Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (1.1.1)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (1.26.4)
Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (2.10)
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (2020.12.5)
Requirement already satisfied: chardet<5,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from requests->plantweb~=1.2.1->-r docs/requirements.txt (line 4)) (4.0.0)
Collecting toml
  Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB)
Collecting pluggy<1.0.0a1,>=0.12
  Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
Collecting attrs>=19.2.0
  Downloading attrs-20.3.0-py2.py3-none-any.whl (49 kB)
Collecting py>=1.8.2
  Downloading py-1.10.0-py2.py3-none-any.whl (97 kB)
Collecting iniconfig
  Downloading iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB)
Collecting importlib-metadata>=0.12
  Downloading importlib_metadata-3.7.3-py3-none-any.whl (12 kB)
Collecting typing-extensions>=3.6.4
  Downloading typing_extensions-3.7.4.3-py3-none-any.whl (22 kB)
Collecting zipp>=0.5
  Downloading zipp-3.4.1-py3-none-any.whl (5.2 kB)
Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.4.7)
Installing collected packages: zipp, typing-extensions, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, importlib-metadata, toml, sphinx, py, pockets, pluggy, llvmlite, iniconfig, attrs, sphinxcontrib-napoleon, sphinx-rtd-theme, pytest, plantweb, numba
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.5
    Uninstalling Sphinx-1.8.5:
      Successfully uninstalled Sphinx-1.8.5
  Attempting uninstall: sphinx-rtd-theme
    Found existing installation: sphinx-rtd-theme 0.4.3
    Uninstalling sphinx-rtd-theme-0.4.3:
      Successfully uninstalled sphinx-rtd-theme-0.4.3
Successfully installed attrs-20.3.0 importlib-metadata-3.7.3 iniconfig-1.1.1 llvmlite-0.31.0 numba-0.48.0 plantweb-1.2.1 pluggy-0.13.1 pockets-0.9.1 py-1.10.0 pytest-6.2.2 sphinx-3.2.1 sphinx-rtd-theme-0.5.1 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-qthelp-1.0.3 toml-0.10.2 typing-extensions-3.7.4.3 zipp-3.4.1

[rtd-command-info] start-time: 2021-03-26T18:31:03.471113Z, end-time: 2021-03-26T18:31:13.384618Z, duration: 9, exit-code: 0
python ./setup.py install --force
running install
running bdist_egg
running egg_info
creating synthpops.egg-info
writing synthpops.egg-info/PKG-INFO
writing dependency_links to synthpops.egg-info/dependency_links.txt
writing requirements to synthpops.egg-info/requires.txt
writing top-level names to synthpops.egg-info/top_level.txt
writing manifest file 'synthpops.egg-info/SOURCES.txt'
reading manifest file 'synthpops.egg-info/SOURCES.txt'
writing manifest file 'synthpops.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/synthpops
copying synthpops/sampling.py -> build/lib/synthpops
copying synthpops/config.py -> build/lib/synthpops
copying synthpops/contact_networks.py -> build/lib/synthpops
copying synthpops/schools.py -> build/lib/synthpops
copying synthpops/households.py -> build/lib/synthpops
copying synthpops/pop.py -> build/lib/synthpops
copying synthpops/process_census.py -> build/lib/synthpops
copying synthpops/version.py -> build/lib/synthpops
copying synthpops/workplaces.py -> build/lib/synthpops
copying synthpops/data_distributions.py -> build/lib/synthpops
copying synthpops/plotting.py -> build/lib/synthpops
copying synthpops/base.py -> build/lib/synthpops
copying synthpops/ltcfs.py -> build/lib/synthpops
copying synthpops/__init__.py -> build/lib/synthpops
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/sampling.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/config.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/contact_networks.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/schools.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/households.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/pop.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/process_census.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/version.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/workplaces.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/data_distributions.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/plotting.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/base.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/ltcfs.py -> build/bdist.linux-x86_64/egg/synthpops
copying build/lib/synthpops/__init__.py -> build/bdist.linux-x86_64/egg/synthpops
byte-compiling build/bdist.linux-x86_64/egg/synthpops/sampling.py to sampling.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/config.py to config.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/contact_networks.py to contact_networks.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/schools.py to schools.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/households.py to households.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/pop.py to pop.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/process_census.py to process_census.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/version.py to version.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/workplaces.py to workplaces.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/data_distributions.py to data_distributions.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/plotting.py to plotting.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/base.py to base.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/ltcfs.py to ltcfs.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/synthpops/__init__.py to __init__.cpython-37.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying synthpops.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying synthpops.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying synthpops.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying synthpops.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying synthpops.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
synthpops.__pycache__.config.cpython-37: module references __file__
creating dist
creating 'dist/synthpops-1.6.1-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing synthpops-1.6.1-py3.7.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/synthpops-1.6.1-py3.7.egg
Extracting synthpops-1.6.1-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding synthpops 1.6.1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/synthpops-1.6.1-py3.7.egg
Processing dependencies for synthpops==1.6.1
Searching for pydot
Reading https://pypi.org/simple/pydot/
Downloading https://files.pythonhosted.org/packages/ea/76/75b1bb82e9bad3e3d656556eaa353d8cd17c4254393b08ec9786ac8ed273/pydot-1.4.2-py2.py3-none-any.whl#sha256=66c98190c65b8d2e2382a441b4c0edfdb4f4c025ef9cb9874de478fb0793a451
Best match: pydot 1.4.2
Processing pydot-1.4.2-py2.py3-none-any.whl
Installing pydot-1.4.2-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding pydot 1.4.2 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/pydot-1.4.2-py3.7.egg
Searching for graphviz
Reading https://pypi.org/simple/graphviz/
Downloading https://files.pythonhosted.org/packages/86/86/89ba50ba65928001d3161f23bfa03945ed18ea13a1d1d44a772ff1fa4e7a/graphviz-0.16-py2.py3-none-any.whl#sha256=3cad5517c961090dfc679df6402a57de62d97703e2880a1a46147bb0dc1639eb
Best match: graphviz 0.16
Processing graphviz-0.16-py2.py3-none-any.whl
Installing graphviz-0.16-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding graphviz 0.16 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/graphviz-0.16-py3.7.egg
Searching for seaborn
Reading https://pypi.org/simple/seaborn/
Downloading https://files.pythonhosted.org/packages/68/ad/6c2406ae175f59ec616714e408979b674fe27b9587f79d59a528ddfbcd5b/seaborn-0.11.1-py3-none-any.whl#sha256=4e1cce9489449a1c6ff3c567f2113cdb41122f727e27a984950d004a88ef3c5c
Best match: seaborn 0.11.1
Processing seaborn-0.11.1-py3-none-any.whl
Installing seaborn-0.11.1-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding seaborn 0.11.1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/seaborn-0.11.1-py3.7.egg
Searching for cmasher
Reading https://pypi.org/simple/cmasher/
Downloading https://files.pythonhosted.org/packages/c8/1a/9d110372f9de144aa3bc7883b4128a6f8865a28436bac57147e6d9b30ba2/cmasher-1.5.10-py3-none-any.whl#sha256=0d7320a5b570a109dd15e670c63bd2a7009992e92cdd36a0d0f337d955f5acfe
Best match: cmasher 1.5.10
Processing cmasher-1.5.10-py3-none-any.whl
Installing cmasher-1.5.10-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding cmasher 1.5.10 to easy-install.pth file
Installing cmr script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/cmasher-1.5.10-py3.7.egg
Searching for cmocean
Reading https://pypi.org/simple/cmocean/
Downloading https://files.pythonhosted.org/packages/48/02/d0f19b00b252fd972e3daec05be73aa811091528f21b90442a15d6a96d89/cmocean-2.0-py3-none-any.whl#sha256=1753f004d84d21c89e76106b2f56e2847808951b2373843bece4dcf532e1a91f
Best match: cmocean 2.0
Processing cmocean-2.0-py3-none-any.whl
Installing cmocean-2.0-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding cmocean 2.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/cmocean-2.0-py3.7.egg
Searching for networkx>=2.3
Reading https://pypi.org/simple/networkx/
Downloading https://files.pythonhosted.org/packages/9b/cd/dc52755d30ba41c60243235460961fc28022e5b6731f16c268667625baea/networkx-2.5-py3-none-any.whl#sha256=8c5812e9f798d37c50570d15c4a69d5710a18d77bafc903ee9c5fba7454c616c
Best match: networkx 2.5
Processing networkx-2.5-py3-none-any.whl
Installing networkx-2.5-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding networkx 2.5 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/networkx-2.5-py3.7.egg
Searching for covasim>=2.0.0
Reading https://pypi.org/simple/covasim/
Downloading https://files.pythonhosted.org/packages/84/b8/06b9cb055f8a26cbb187c962ede80148d0c7e80b3a46c7df9309654be861/covasim-2.1.0-py3-none-any.whl#sha256=12e51721c7d48eb6aced86afeefc8e4e0ac3c7321a9852ab6c3f465e529159e2
Best match: covasim 2.1.0
Processing covasim-2.1.0-py3-none-any.whl
Installing covasim-2.1.0-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding covasim 2.1.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/covasim-2.1.0-py3.7.egg
Searching for sciris>=1.0.0
Reading https://pypi.org/simple/sciris/
Downloading https://files.pythonhosted.org/packages/a5/8d/bf0545ef25a10d52c78f1aa08548eab729ce967fe2f782d6315f5454d5a1/sciris-1.1.1-py3-none-any.whl#sha256=a344f9d185aef89912e029d5f0236ceeb9cf59642325f9516469de1e2da4ba6b
Best match: sciris 1.1.1
Processing sciris-1.1.1-py3-none-any.whl
Installing sciris-1.1.1-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding sciris 1.1.1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/sciris-1.1.1-py3.7.egg
Searching for e13tools>=0.9.4
Reading https://pypi.org/simple/e13tools/
Downloading https://files.pythonhosted.org/packages/dd/cc/f699b2af6789be195269fa04747b9bddbe5488b30571a0f1e8c2dfcd9267/e13tools-0.9.6-py3-none-any.whl#sha256=2611f98c176f6fdaecba50ffeeb37c639a921331098bb8c0569773b699cea89b
Best match: e13tools 0.9.6
Processing e13tools-0.9.6-py3-none-any.whl
Installing e13tools-0.9.6-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding e13tools 0.9.6 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/e13tools-0.9.6-py3.7.egg
Searching for colorspacious>=1.1.0
Reading https://pypi.org/simple/colorspacious/
Downloading https://files.pythonhosted.org/packages/ab/a1/318b9aeca7b9856410ededa4f52d6f82174d1a41e64bdd70d951e532675a/colorspacious-1.1.2-py2.py3-none-any.whl#sha256=c78befa603cea5dccb332464e7dd29e96469eebf6cd5133029153d1e69e3fd6f
Best match: colorspacious 1.1.2
Processing colorspacious-1.1.2-py2.py3-none-any.whl
Installing colorspacious-1.1.2-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding colorspacious 1.1.2 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/colorspacious-1.1.2-py3.7.egg
Searching for decorator>=4.3.0
Reading https://pypi.org/simple/decorator/
Downloading https://files.pythonhosted.org/packages/ed/1b/72a1821152d07cf1d8b6fce298aeb06a7eb90f4d6d41acec9861e7cc6df0/decorator-4.4.2-py2.py3-none-any.whl#sha256=41fa54c2a0cc4ba648be4fd43cff00aedf5b9465c9bf18d64325bc225f08f760
Best match: decorator 4.4.2
Processing decorator-4.4.2-py2.py3-none-any.whl
Installing decorator-4.4.2-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding decorator 4.4.2 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/decorator-4.4.2-py3.7.egg
Searching for xlrd==1.2.0
Reading https://pypi.org/simple/xlrd/
Downloading https://files.pythonhosted.org/packages/b0/16/63576a1a001752e34bf8ea62e367997530dc553b689356b9879339cf45a4/xlrd-1.2.0-py2.py3-none-any.whl#sha256=e551fb498759fa3a5384a94ccd4c3c02eb7c00ea424426e212ac0c57be9dfbde
Best match: xlrd 1.2.0
Processing xlrd-1.2.0-py2.py3-none-any.whl
Installing xlrd-1.2.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding xlrd 1.2.0 to easy-install.pth file
Installing runxlrd.py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/xlrd-1.2.0-py3.7.egg
Searching for statsmodels
Reading https://pypi.org/simple/statsmodels/
Downloading https://files.pythonhosted.org/packages/da/69/8eef30a6237c54f3c0b524140e2975f4b1eea3489b45eb3339574fc8acee/statsmodels-0.12.2-cp37-cp37m-manylinux1_x86_64.whl#sha256=43de84bc08c8b9f778502aed7a476d6e68674e6878718e533b07d569cf0927a9
Best match: statsmodels 0.12.2
Processing statsmodels-0.12.2-cp37-cp37m-manylinux1_x86_64.whl
Installing statsmodels-0.12.2-cp37-cp37m-manylinux1_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding statsmodels 0.12.2 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/statsmodels-0.12.2-py3.7-linux-x86_64.egg
Searching for xlsxwriter
Reading https://pypi.org/simple/xlsxwriter/
Downloading https://files.pythonhosted.org/packages/6b/41/bf1aae04932d1eaffee1fc5f8b38ca47bbbf07d765129539bc4bcce1ce0c/XlsxWriter-1.3.7-py2.py3-none-any.whl#sha256=b807c2d3e379bf6a925f472955beef3e07495c1bac708640696876e68675b49b
Best match: XlsxWriter 1.3.7
Processing XlsxWriter-1.3.7-py2.py3-none-any.whl
Installing XlsxWriter-1.3.7-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding XlsxWriter 1.3.7 to easy-install.pth file
Installing vba_extract.py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/XlsxWriter-1.3.7-py3.7.egg
Searching for psutil
Reading https://pypi.org/simple/psutil/
Downloading https://files.pythonhosted.org/packages/84/da/f7efdcf012b51506938553dbe302aecc22f3f43abd5cffa8320e8e0588d5/psutil-5.8.0-cp37-cp37m-manylinux2010_x86_64.whl#sha256=0dd4465a039d343925cdc29023bb6960ccf4e74a65ad53e768403746a9207023
Best match: psutil 5.8.0
Processing psutil-5.8.0-cp37-cp37m-manylinux2010_x86_64.whl
Installing psutil-5.8.0-cp37-cp37m-manylinux2010_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding psutil 5.8.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/psutil-5.8.0-py3.7-linux-x86_64.egg
Searching for openpyexcel>=2.5
Reading https://pypi.org/simple/openpyexcel/
Downloading https://files.pythonhosted.org/packages/32/e1/722047fae7a46b658d7fa038cf5b952fbbb150c3c8a31012e4fb76eba27d/openpyexcel-2.5.14-py2.py3-none-any.whl#sha256=f18f4efadbc25a26870885f342e14b6cd6862ca1f4b8195b394fc2681ccdbaab
Best match: openpyexcel 2.5.14
Processing openpyexcel-2.5.14-py2.py3-none-any.whl
Installing openpyexcel-2.5.14-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding openpyexcel 2.5.14 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/openpyexcel-2.5.14-py3.7.egg
Searching for multiprocess
Reading https://pypi.org/simple/multiprocess/
Downloading https://files.pythonhosted.org/packages/db/20/458ac043a57322365ac2ed86a911bf7598fc2e49bccb3f94ea810fbb6b9b/multiprocess-0.70.11.1-py37-none-any.whl#sha256=164c77448e357ebee0dc6abc7ee8c823e40e295e629a5fc6d31725109a3a7ee9
Best match: multiprocess 0.70.11.1
Processing multiprocess-0.70.11.1-py37-none-any.whl
Installing multiprocess-0.70.11.1-py37-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding multiprocess 0.70.11.1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/multiprocess-0.70.11.1-py3.7.egg
Searching for memory-profiler
Reading https://pypi.org/simple/memory-profiler/
Downloading https://files.pythonhosted.org/packages/8f/fd/d92b3295657f8837e0177e7b48b32d6651436f0293af42b76d134c3bb489/memory_profiler-0.58.0.tar.gz#sha256=01385ac0fec944fcf7969814ec4406c6d8a9c66c079d09276723c5a7680f44e5
Best match: memory-profiler 0.58.0
Processing memory_profiler-0.58.0.tar.gz
Writing /tmp/easy_install-dvb0jboo/memory_profiler-0.58.0/setup.cfg
Running memory_profiler-0.58.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-dvb0jboo/memory_profiler-0.58.0/egg-dist-tmp-bchck02j
warning: no files found matching 'mprof.bat'
zip_safe flag not set; analyzing archive contents...
__pycache__.memory_profiler.cpython-37: module MAY be using inspect.getsourcefile
__pycache__.memory_profiler.cpython-37: module MAY be using inspect.stack
__pycache__.memory_profiler.cpython-37: module MAY be using inspect.trace
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/memory_profiler-0.58.0-py3.7.egg
Extracting memory_profiler-0.58.0-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding memory-profiler 0.58.0 to easy-install.pth file
Installing mprof script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/memory_profiler-0.58.0-py3.7.egg
Searching for line-profiler
Reading https://pypi.org/simple/line-profiler/
Downloading https://files.pythonhosted.org/packages/fb/89/cb7787463c0bc676d3200d278d26a732ce4921ba5efce6eb8e1fc29b6fff/line_profiler-3.1.0-cp37-cp37m-manylinux1_x86_64.whl#sha256=2b937d8b207cee753d175cc65907901bd9ccadfe20ff2038df9aeae2eafcba6b
Best match: line-profiler 3.1.0
Processing line_profiler-3.1.0-cp37-cp37m-manylinux1_x86_64.whl
Installing line_profiler-3.1.0-cp37-cp37m-manylinux1_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding line-profiler 3.1.0 to easy-install.pth file
Installing kernprof script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/line_profiler-3.1.0-py3.7-linux-x86_64.egg
Searching for jsonpickle
Reading https://pypi.org/simple/jsonpickle/
Downloading https://files.pythonhosted.org/packages/bb/1a/f2db026d4d682303793559f1c2bb425ba3ec0d6fd7ac63397790443f2461/jsonpickle-2.0.0-py2.py3-none-any.whl#sha256=c1010994c1fbda87a48f8a56698605b598cb0fc6bb7e7927559fc1100e69aeac
Best match: jsonpickle 2.0.0
Processing jsonpickle-2.0.0-py2.py3-none-any.whl
Installing jsonpickle-2.0.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding jsonpickle 2.0.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/jsonpickle-2.0.0-py3.7.egg
Searching for jellyfish
Reading https://pypi.org/simple/jellyfish/
Downloading https://files.pythonhosted.org/packages/30/a6/4d039bc827a102f62ce7a7910713e38fdfd7c7a40aa39c72fb14938a1473/jellyfish-0.8.2-cp37-cp37m-manylinux2014_x86_64.whl#sha256=4213dda17b75e09b4a5bac48b7dd2602cf54304af49fd6236d3539f49f614e8a
Best match: jellyfish 0.8.2
Processing jellyfish-0.8.2-cp37-cp37m-manylinux2014_x86_64.whl
Installing jellyfish-0.8.2-cp37-cp37m-manylinux2014_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding jellyfish 0.8.2 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/jellyfish-0.8.2-py3.7-linux-x86_64.egg
Searching for gitpython
Reading https://pypi.org/simple/gitpython/
Downloading https://files.pythonhosted.org/packages/a6/99/98019716955ba243657daedd1de8f3a88ca1f5b75057c38e959db22fb87b/GitPython-3.1.14-py3-none-any.whl#sha256=3283ae2fba31c913d857e12e5ba5f9a7772bbc064ae2bb09efafa71b0dd4939b
Best match: GitPython 3.1.14
Processing GitPython-3.1.14-py3-none-any.whl
Installing GitPython-3.1.14-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding GitPython 3.1.14 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/GitPython-3.1.14-py3.7.egg
Searching for dill
Reading https://pypi.org/simple/dill/
Downloading https://files.pythonhosted.org/packages/52/d6/79f40d230895fa1ce3b6af0d22e0ac79c65175dc069c194b79cc8e05a033/dill-0.3.3-py2.py3-none-any.whl#sha256=78370261be6ea49037ace8c17e0b7dd06d0393af6513cc23f9b222d9367ce389
Best match: dill 0.3.3
Processing dill-0.3.3-py2.py3-none-any.whl
Installing dill-0.3.3-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding dill 0.3.3 to easy-install.pth file
Installing get_objgraph script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin
Installing undill script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/dill-0.3.3-py3.7.egg
Searching for patsy>=0.5
Reading https://pypi.org/simple/patsy/
Downloading https://files.pythonhosted.org/packages/ea/0c/5f61f1a3d4385d6bf83b83ea495068857ff8dfb89e74824c6e9eb63286d8/patsy-0.5.1-py2.py3-none-any.whl#sha256=5465be1c0e670c3a965355ec09e9a502bf2c4cbe4875e8528b0221190a8a5d40
Best match: patsy 0.5.1
Processing patsy-0.5.1-py2.py3-none-any.whl
Installing patsy-0.5.1-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding patsy 0.5.1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/patsy-0.5.1-py3.7.egg
Searching for jdcal
Reading https://pypi.org/simple/jdcal/
Downloading https://files.pythonhosted.org/packages/f0/da/572cbc0bc582390480bbd7c4e93d14dc46079778ed915b505dc494b37c57/jdcal-1.4.1-py2.py3-none-any.whl#sha256=1abf1305fce18b4e8aa248cf8fe0c56ce2032392bc64bbd61b5dff2a19ec8bba
Best match: jdcal 1.4.1
Processing jdcal-1.4.1-py2.py3-none-any.whl
Installing jdcal-1.4.1-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding jdcal 1.4.1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/jdcal-1.4.1-py3.7.egg
Searching for et-xmlfile
Reading https://pypi.org/simple/et-xmlfile/
Downloading https://files.pythonhosted.org/packages/22/28/a99c42aea746e18382ad9fb36f64c1c1f04216f41797f2f0fa567da11388/et_xmlfile-1.0.1.tar.gz#sha256=614d9722d572f6246302c4491846d2c393c199cfa4edc9af593437691683335b
Best match: et-xmlfile 1.0.1
Processing et_xmlfile-1.0.1.tar.gz
Writing /tmp/easy_install-opzxhqr0/et_xmlfile-1.0.1/setup.cfg
Running et_xmlfile-1.0.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-opzxhqr0/et_xmlfile-1.0.1/egg-dist-tmp-eyj7pnp5
zip_safe flag not set; analyzing archive contents...
et_xmlfile.tests.__pycache__.common_imports.cpython-37: module references __file__
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/et_xmlfile-1.0.1-py3.7.egg
Extracting et_xmlfile-1.0.1-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding et-xmlfile 1.0.1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/et_xmlfile-1.0.1-py3.7.egg
Searching for IPython
Reading https://pypi.org/simple/IPython/
Downloading https://files.pythonhosted.org/packages/3b/43/6dbd0610550708fc418ad027fda97b5f415da9053749641654fdacfec93f/ipython-7.21.0-py3-none-any.whl#sha256=34207ffb2f653bced2bc8e3756c1db86e7d93e44ed049daae9814fed66d408ec
Best match: ipython 7.21.0
Processing ipython-7.21.0-py3-none-any.whl
Installing ipython-7.21.0-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding ipython 7.21.0 to easy-install.pth file
Installing iptest script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin
Installing iptest3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin
Installing ipython script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin
Installing ipython3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/ipython-7.21.0-py3.7.egg
Searching for gitdb<5,>=4.0.1
Reading https://pypi.org/simple/gitdb/
Downloading https://files.pythonhosted.org/packages/ea/e8/f414d1a4f0bbc668ed441f74f44c116d9816833a48bf81d22b697090dba8/gitdb-4.0.7-py3-none-any.whl#sha256=6c4cc71933456991da20917998acbe6cf4fb41eeaab7d6d67fbc05ecd4c865b0
Best match: gitdb 4.0.7
Processing gitdb-4.0.7-py3-none-any.whl
Installing gitdb-4.0.7-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding gitdb 4.0.7 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/gitdb-4.0.7-py3.7.egg
Searching for traitlets>=4.2
Reading https://pypi.org/simple/traitlets/
Downloading https://files.pythonhosted.org/packages/f6/7d/3ecb0ebd0ce8dcdfa7bd47ab85c1d4a521e6770ef283d0824f5804994dfe/traitlets-5.0.5-py3-none-any.whl#sha256=69ff3f9d5351f31a7ad80443c2674b7099df13cc41fc5fa6e2f6d3b0330b0426
Best match: traitlets 5.0.5
Processing traitlets-5.0.5-py3-none-any.whl
Installing traitlets-5.0.5-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding traitlets 5.0.5 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/traitlets-5.0.5-py3.7.egg
Searching for prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0
Reading https://pypi.org/simple/prompt-toolkit/
Downloading https://files.pythonhosted.org/packages/eb/e6/4b4ca4fa94462d4560ba2f4e62e62108ab07be2e16a92e594e43b12d3300/prompt_toolkit-3.0.18-py3-none-any.whl#sha256=bf00f22079f5fadc949f42ae8ff7f05702826a97059ffcc6281036ad40ac6f04
Best match: prompt-toolkit 3.0.18
Processing prompt_toolkit-3.0.18-py3-none-any.whl
Installing prompt_toolkit-3.0.18-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding prompt-toolkit 3.0.18 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/prompt_toolkit-3.0.18-py3.7.egg
Searching for pickleshare
Reading https://pypi.org/simple/pickleshare/
Downloading https://files.pythonhosted.org/packages/9a/41/220f49aaea88bc6fa6cba8d05ecf24676326156c23b991e80b3f2fc24c77/pickleshare-0.7.5-py2.py3-none-any.whl#sha256=9649af414d74d4df115d5d718f82acb59c9d418196b7b4290ed47a12ce62df56
Best match: pickleshare 0.7.5
Processing pickleshare-0.7.5-py2.py3-none-any.whl
Installing pickleshare-0.7.5-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding pickleshare 0.7.5 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/pickleshare-0.7.5-py3.7.egg
Searching for pexpect>4.3
Reading https://pypi.org/simple/pexpect/
Downloading https://files.pythonhosted.org/packages/39/7b/88dbb785881c28a102619d46423cb853b46dbccc70d3ac362d99773a78ce/pexpect-4.8.0-py2.py3-none-any.whl#sha256=0b48a55dcb3c05f3329815901ea4fc1537514d6ba867a152b581d69ae3710937
Best match: pexpect 4.8.0
Processing pexpect-4.8.0-py2.py3-none-any.whl
Installing pexpect-4.8.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding pexpect 4.8.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/pexpect-4.8.0-py3.7.egg
Searching for jedi>=0.16
Reading https://pypi.org/simple/jedi/
Downloading https://files.pythonhosted.org/packages/f9/36/7aa67ae2663025b49e8426ead0bad983fee1b73f472536e9790655da0277/jedi-0.18.0-py2.py3-none-any.whl#sha256=18456d83f65f400ab0c2d3319e48520420ef43b23a086fdc05dff34132f0fb93
Best match: jedi 0.18.0
Processing jedi-0.18.0-py2.py3-none-any.whl
Installing jedi-0.18.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding jedi 0.18.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/jedi-0.18.0-py3.7.egg
Searching for backcall
Reading https://pypi.org/simple/backcall/
Downloading https://files.pythonhosted.org/packages/4c/1c/ff6546b6c12603d8dd1070aa3c3d273ad4c07f5771689a7b69a550e8c951/backcall-0.2.0-py2.py3-none-any.whl#sha256=fbbce6a29f263178a1f7915c1940bde0ec2b2a967566fe1c65c1dfb7422bd255
Best match: backcall 0.2.0
Processing backcall-0.2.0-py2.py3-none-any.whl
Installing backcall-0.2.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding backcall 0.2.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/backcall-0.2.0-py3.7.egg
Searching for smmap<5,>=3.0.1
Reading https://pypi.org/simple/smmap/
Downloading https://files.pythonhosted.org/packages/68/ee/d540eb5e5996eb81c26ceffac6ee49041d473bc5125f2aa995cf51ec1cf1/smmap-4.0.0-py2.py3-none-any.whl#sha256=a9a7479e4c572e2e775c404dcd3080c8dc49f39918c2cf74913d30c4c478e3c2
Best match: smmap 4.0.0
Processing smmap-4.0.0-py2.py3-none-any.whl
Installing smmap-4.0.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding smmap 4.0.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/smmap-4.0.0-py3.7.egg
Searching for ipython-genutils
Reading https://pypi.org/simple/ipython-genutils/
Downloading https://files.pythonhosted.org/packages/fa/bc/9bd3b5c2b4774d5f33b2d544f1460be9df7df2fe42f352135381c347c69a/ipython_genutils-0.2.0-py2.py3-none-any.whl#sha256=72dd37233799e619666c9f639a9da83c34013a73e8bbc79a7a6348d93c61fab8
Best match: ipython-genutils 0.2.0
Processing ipython_genutils-0.2.0-py2.py3-none-any.whl
Installing ipython_genutils-0.2.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding ipython-genutils 0.2.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/ipython_genutils-0.2.0-py3.7.egg
Searching for wcwidth
Reading https://pypi.org/simple/wcwidth/
Downloading https://files.pythonhosted.org/packages/59/7c/e39aca596badaf1b78e8f547c807b04dae603a433d3e7a7e04d67f2ef3e5/wcwidth-0.2.5-py2.py3-none-any.whl#sha256=beb4802a9cebb9144e99086eff703a642a13d6a0052920003a230f3294bbe784
Best match: wcwidth 0.2.5
Processing wcwidth-0.2.5-py2.py3-none-any.whl
Installing wcwidth-0.2.5-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding wcwidth 0.2.5 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/wcwidth-0.2.5-py3.7.egg
Searching for ptyprocess>=0.5
Reading https://pypi.org/simple/ptyprocess/
Downloading https://files.pythonhosted.org/packages/22/a6/858897256d0deac81a172289110f31629fc4cee19b6f01283303e18c8db3/ptyprocess-0.7.0-py2.py3-none-any.whl#sha256=4b41f3967fce3af57cc7e94b888626c18bf37a083e3651ca8feeb66d492fef35
Best match: ptyprocess 0.7.0
Processing ptyprocess-0.7.0-py2.py3-none-any.whl
Installing ptyprocess-0.7.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding ptyprocess 0.7.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/ptyprocess-0.7.0-py3.7.egg
Searching for parso<0.9.0,>=0.8.0
Reading https://pypi.org/simple/parso/
Downloading https://files.pythonhosted.org/packages/ad/f0/ef6bdb1eba2dbfda60c985cd8d7b47b6ed8c6a1f5d212f39ff50b64f172c/parso-0.8.1-py2.py3-none-any.whl#sha256=15b00182f472319383252c18d5913b69269590616c947747bc50bf4ac768f410
Best match: parso 0.8.1
Processing parso-0.8.1-py2.py3-none-any.whl
Installing parso-0.8.1-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Adding parso 0.8.1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/parso-0.8.1-py3.7.egg
Searching for numba==0.48.0
Best match: numba 0.48.0
Adding numba 0.48.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for pandas==1.1.3
Best match: pandas 1.1.3
Adding pandas 1.1.3 to easy-install.pth file

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for scipy==1.5.3
Best match: scipy 1.5.3
scipy 1.5.3 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for numpy==1.19.2
Best match: numpy 1.19.2
numpy 1.19.2 is already the active version in easy-install.pth
Installing f2py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin
Installing f2py3 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin
Installing f2py3.7 script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for matplotlib==3.3.2
Best match: matplotlib 3.3.2
matplotlib 3.3.2 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for pyparsing==2.4.7
Best match: pyparsing 2.4.7
Adding pyparsing 2.4.7 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for llvmlite==0.31.0
Best match: llvmlite 0.31.0
Adding llvmlite 0.31.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for setuptools==54.2.0
Best match: setuptools 54.2.0
Adding setuptools 54.2.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for pytz==2021.1
Best match: pytz 2021.1
Adding pytz 2021.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for python-dateutil==2.8.1
Best match: python-dateutil 2.8.1
python-dateutil 2.8.1 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for Pillow==8.0.0
Best match: Pillow 8.0.0
Pillow 8.0.0 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for certifi==2020.12.5
Best match: certifi 2020.12.5
Adding certifi 2020.12.5 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for kiwisolver==1.2.0
Best match: kiwisolver 1.2.0
kiwisolver 1.2.0 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for cycler==0.10.0
Best match: cycler 0.10.0
cycler 0.10.0 is already the active version in easy-install.pth

Using /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages
Searching for six==1.15.0
Best match: six 1.15.0
Adding six 1.15.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for importlib-metadata==3.7.3
Best match: importlib-metadata 3.7.3
Adding importlib-metadata 3.7.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for Pygments==2.8.1
Best match: Pygments 2.8.1
Adding Pygments 2.8.1 to easy-install.pth file
Installing pygmentize script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/bin

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for zipp==3.4.1
Best match: zipp 3.4.1
Adding zipp 3.4.1 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Searching for typing-extensions==3.7.4.3
Best match: typing-extensions 3.7.4.3
Adding typing-extensions 3.7.4.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages
Finished processing dependencies for synthpops==1.6.1

[rtd-command-info] start-time: 2021-03-26T18:31:14.614356Z, end-time: 2021-03-26T18:31:14.712430Z, duration: 0, exit-code: 0
cat docs/conf.py
# -*- coding: utf-8 -*-
#
# Sphinx Demo documentation build configuration file, created by
# sphinx-quickstart on Fri Aug 26 16:52:16 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
import os
import subprocess
import sys
import sphinx_rtd_theme

on_rtd = os.environ.get('READTHEDOCS') == 'True'

if sys.platform in ["linux", "darwin"]:
    subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))
else:
    subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))

# Rename "synthpops package" to "API reference"
filename = 'modules.rst' # This must match the Makefile
with open(filename) as f: # Read existing file
    lines = f.readlines()
lines[0] = "API reference\n" # Blast away the existing heading and replace with this
lines[1] = "=============\n" # Ensure the heading is the right length
with open(filename, "w") as f: # Write new file
    f.writelines(lines)

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.mathjax',
    'sphinx.ext.githubpages',
    'sphinx.ext.autodoc',
    'sphinx.ext.napoleon',
    'sphinx.ext.todo',
    'plantweb.directive'
]

plantuml = 'plantweb'

autodoc_default_options = {
    'member-order': 'bysource',
    'members': None
}

autodoc_mock_imports = []


napoleon_google_docstring = True
# napoleon_numpy_docstring = True

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The encoding of source files.
#
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'SynthPops'
copyright = u'2020, Bill & Melinda Gates Foundation. All rights reserved.'
author = u'Institute for Disease Modeling'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = u''
# The full version, including alpha/beta/rc tags.
# release = u'1.0'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#
# today = ''
#
# Else, today_fmt is used as the format for a strftime call.
#
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The reST default role (used for this markup: `text`) to use for all
# documents.
#
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False

# RST epilog is added to the end of every topic. Useful for replace
# directives to use across the docset.

rst_epilog = "\n.. include:: /variables.txt"

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
# #
# html_theme_options = {
# }

# Add any paths that contain custom themes here, relative to this directory.
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# The name for this set of Sphinx documents.
# "<project> v<release> documentation" by default.
#
# html_title = u'Sphinx Demo v1.0'

# A shorter title for the navigation bar.  Default is the same as html_title.
#
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#
html_logo = "images/IDM_white.png"

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#
html_favicon = "images/favicon.ico"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

html_context = {
    'rtd_url': 'https://docs.idmod.org/projects/synthpops/en/latest',
    'theme_vcs_pageview_mode': 'edit',
    'css_files': [
        '_static/theme_overrides.css'
    ]
}
# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#
if not on_rtd: 
    html_extra_path = ['robots.txt']

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
#
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#
# html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#
# html_additional_pages = {}

# If false, no module index is generated.
#
# html_domain_indices = True

# If false, no index is generated.
#
# html_use_index = True

# If true, the index is split into individual pages for each letter.
#
# html_split_index = False

# If true, links to the reST sources are added to the pages.
#
html_show_sourcelink = False

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#
html_show_sphinx = False

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#
# html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#
html_use_opensearch = 'docs.idmod.org/projects/synthpops/en/latest'

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh'
#
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
#
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'SynthPops'

# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'synthpops-docs.tex', u'SynthPops',
     u'Institute for Disease Modeling', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#
# latex_use_parts = False

# If true, show page references after internal links.
#
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
#
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
#
# latex_appendices = []

# It false, will not define \strong, \code,     itleref, \crossref ... but only
# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
# packages.
#
# latex_keep_old_macro_names = True

# If false, no module index is generated.
#
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'synthpops-docs', u'SynthPops',
     [author], 1)
]

# If true, show URL addresses after external links.
#
man_show_urls = True

# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'synthpops-docs', u'SynthPops',
     author, 'Institute for Disease Modeling', 'How to use SynthPops for creating synthetic populations.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#
# texinfo_appendices = []

# If false, no module index is generated.
#
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#
# texinfo_no_detailmenu = False


# Example configuration for intersphinx: refer to the Python standard library.
# intersphinx_mapping = {'https://docs.python.org/': None}




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file should't rely on extra depencies.

import importlib
import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("v1.5.1", "/en/v1.5.1/"),
    ("v1.4.3", "/en/v1.4.3/"),
    ("v0.5.1", "/en/v0.5.1/"),
    ("v0.5.0", "/en/v0.5.0/"),
    ],
    'downloads': [ 
    ("pdf", "//docs.idmod.org/_/downloads/synthpops/en/latest/pdf/"),
    ("html", "//docs.idmod.org/_/downloads/synthpops/en/latest/htmlzip/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'institute-for-disease-modeling-synthpops-test',
    'name': u'synthpops',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': 'https://docs.idmod.org/projects/synthpops/en/latest/',
    'analytics_code': 'UA-87656833-3',
    'single_version': False,
    'conf_py_path': '/docs/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'InstituteforDiseaseModeling',
    'proxied_api_host': '/_',
    'github_repo': 'synthpops',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': 'UA-87656833-3',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '5b32ec61',
}

# For sphinx >=1.8 we can use html_baseurl to set the canonical URL.
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl
if version_info >= (1, 8):
    if not globals().get('html_baseurl'):
        html_baseurl = context['canonical_url']
    context['canonical_url'] = None





if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'None'
    readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-synthpops-test/builds/600417/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2021-03-26T18:31:14.849668Z, end-time: 2021-03-26T18:31:30.185317Z, duration: 15, exit-code: 1
python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . _build/html
Running Sphinx v3.2.1
rm: cannot remove 'modules.rst': No such file or directory
make: [generate-api] Error 1 (ignored)
loading translations [en]... done
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 24 source files that are out of date
updating environment: [new config] 24 added, 0 changed, 0 removed
reading sources... [  4%] algorithm
reading sources... [  8%] glossary
reading sources... [ 12%] households
reading sources... [ 16%] index
reading sources... [ 20%] installation
reading sources... [ 25%] modules
Covasim 2.1.0 (2021-03-23) — © 2021 by IDM
reading sources... [ 29%] overview
reading sources... [ 33%] schools
reading sources... [ 37%] synthpops.base
reading sources... [ 41%] synthpops.config
reading sources... [ 45%] synthpops.contact_networks
reading sources... [ 50%] synthpops.data_distributions
reading sources... [ 54%] synthpops.households
reading sources... [ 58%] synthpops.ltcfs
reading sources... [ 62%] synthpops.plotting
reading sources... [ 66%] synthpops.pop
reading sources... [ 70%] synthpops.process_census
reading sources... [ 75%] synthpops.sampling
reading sources... [ 79%] synthpops.schools
reading sources... [ 83%] synthpops.version
reading sources... [ 87%] synthpops.workplaces
reading sources... [ 91%] usage
reading sources... [ 95%] whatsnew
reading sources... [100%] workplaces

/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/synthpops-1.6.1-py3.7.egg/synthpops/pop.py:docstring of synthpops.pop.Pop.plot_household_sizes:4: WARNING: Inline strong start-string without end-string.
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/synthpops-1.6.1-py3.7.egg/synthpops/pop.py:docstring of synthpops.pop.Pop.plot_ltcf_resident_sizes:4: WARNING: Inline strong start-string without end-string.
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/synthpops-1.6.1-py3.7.egg/synthpops/pop.py:docstring of synthpops.pop.Pop.plot_enrollment_rates_by_age:4: WARNING: Inline strong start-string without end-string.
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.7/site-packages/synthpops-1.6.1-py3.7.egg/synthpops/pop.py:docstring of synthpops.pop.Pop.plot_workplace_sizes:5: WARNING: Inline strong start-string without end-string.
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/checkouts/latest/docs/whatsnew.rst: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [  4%] algorithm
writing output... [  8%] glossary
writing output... [ 12%] households
writing output... [ 16%] index
writing output... [ 20%] installation
writing output... [ 25%] modules
writing output... [ 29%] overview
writing output... [ 33%] schools
writing output... [ 37%] synthpops.base
writing output... [ 41%] synthpops.config
writing output... [ 45%] synthpops.contact_networks
writing output... [ 50%] synthpops.data_distributions
writing output... [ 54%] synthpops.households
writing output... [ 58%] synthpops.ltcfs
writing output... [ 62%] synthpops.plotting
writing output... [ 66%] synthpops.pop
writing output... [ 70%] synthpops.process_census
writing output... [ 75%] synthpops.sampling
writing output... [ 79%] synthpops.schools
writing output... [ 83%] synthpops.version
writing output... [ 87%] synthpops.workplaces
writing output... [ 91%] usage
writing output... [ 95%] whatsnew
writing output... [100%] workplaces

generating indices...  genindex py-modindexdone
writing additional pages...  search opensearchdone
copying static files... ... done
copying extra files... done
dumping search index in English (code: en)... done
dumping object inventory... done
build finished with problems, 5 warnings.
Updating searchtools for Read the Docs search...