Read the Docs build information Build id: 498948 Project: institute-for-disease-modeling-covasim Version: latest Commit: 556ea85ab2a639af6b552f6c80a73eae83a1e480 Date: 2020-12-05T23:10:56.209442Z State: finished Success: False [rtd-command-info] start-time: 2020-12-05T23:11:03.444478Z, end-time: 2020-12-05T23:11:07.958801Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 git@github.com:InstituteforDiseaseModeling/covasim.git . Cloning into '.'... Warning: Permanently added 'github.com,192.30.255.112' (RSA) to the list of known hosts. [rtd-command-info] start-time: 2020-12-05T23:11:09.227264Z, end-time: 2020-12-05T23:11:09.318165Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 556ea85 Merge pull request #738 from amath-idm/covasim-2.0rc1 [rtd-command-info] start-time: 2020-12-05T23:11:09.426243Z, end-time: 2020-12-05T23:11:09.480365Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-12-05T23:11:10.799267Z, end-time: 2020-12-05T23:11:33.715804Z, duration: 22, exit-code: 0 python3.7 -mvirtualenv --system-site-packages Using base prefix '/home/docs/.pyenv/versions/3.7.9' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-12-05T23:11:33.938019Z, end-time: 2020-12-05T23:11:35.670718Z, duration: 1, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (20.3.1) [rtd-command-info] start-time: 2020-12-05T23:11:35.786952Z, end-time: 2020-12-05T23:11:45.382850Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir -I setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 six commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.zip (861 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting readthedocs-sphinx-ext<2.2 Downloading readthedocs_sphinx_ext-2.1.1-py2.py3-none-any.whl (13 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting six Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.9.0-py2.py3-none-any.whl (8.8 MB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting Jinja2>=2.9 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting packaging Downloading packaging-20.7-py2.py3-none-any.whl (35 kB) Collecting Pygments>=2.0 Downloading Pygments-2.7.2-py3-none-any.whl (948 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting pytz>=2015.7 Downloading pytz-2020.4-py2.py3-none-any.whl (509 kB) Collecting requests Downloading requests-2.25.0-py2.py3-none-any.whl (61 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.12.5-py2.py3-none-any.whl (147 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Collecting urllib3<1.27,>=1.21.1 Downloading urllib3-1.26.2-py2.py3-none-any.whl (136 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=76631a7e4209f8dcbc53b830c6f47d82d2811b530c9c70d7bcc0546f49e0ae59 Stored in directory: /tmp/pip-ephem-wheel-cache-hm9rnyoi/wheels/7a/94/b1/0fdc5339a5bd487a5cc15421ec200d9ba3e2aa7190e4a727f1 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=389c8312043334c1ab3992f0eb09ff2eb2ece45ce429501d0301adf8087ea6cf Stored in directory: /tmp/pip-ephem-wheel-cache-hm9rnyoi/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: urllib3, sphinxcontrib-serializinghtml, pytz, pyparsing, MarkupSafe, idna, chardet, certifi, sphinxcontrib-websupport, snowballstemmer, six, setuptools, requests, Pygments, packaging, Jinja2, imagesize, future, docutils, babel, alabaster, sphinx, commonmark, sphinx-rtd-theme, recommonmark, readthedocs-sphinx-ext, pillow, mock ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. matplotlib 3.3.2 requires pillow>=6.2.0, but you have pillow 5.4.1 which is incompatible. Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.7.2 alabaster-0.7.12 babel-2.9.0 certifi-2020.12.5 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.7 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.4 readthedocs-sphinx-ext-2.1.1 recommonmark-0.5.0 requests-2.25.0 setuptools-50.3.2 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.26.2 [rtd-command-info] start-time: 2020-12-05T23:11:45.485209Z, end-time: 2020-12-05T23:12:12.138274Z, duration: 26, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Requirement already satisfied: sphinx-rtd-theme in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from -r docs/requirements.txt (line 1)) (0.4.3) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from -r docs/requirements.txt (line 3)) (1.8.5) Collecting nbsphinx Downloading nbsphinx-0.8.0-py3-none-any.whl (24 kB) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from nbsphinx->-r docs/requirements.txt (line 6)) (0.14) Requirement already satisfied: jinja2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from nbsphinx->-r docs/requirements.txt (line 6)) (2.11.2) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from -r docs/requirements.txt (line 3)) (1.8.5) Collecting optuna Downloading optuna-2.3.0.tar.gz (258 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing wheel metadata: started Preparing wheel metadata: finished with status 'done' Requirement already satisfied: numpy in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from optuna->-r docs/requirements.txt (line 7)) (1.19.2) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from optuna->-r docs/requirements.txt (line 7)) (20.7) Requirement already satisfied: scipy!=1.4.0 in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from optuna->-r docs/requirements.txt (line 7)) (1.5.3) Collecting plantweb Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from plantweb->-r docs/requirements.txt (line 4)) (1.15.0) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from plantweb->-r docs/requirements.txt (line 4)) (2.25.0) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from nbsphinx->-r docs/requirements.txt (line 6)) (0.14) Collecting pytest Downloading pytest-6.1.2-py3-none-any.whl (272 kB) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from optuna->-r docs/requirements.txt (line 7)) (20.7) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from optuna->-r docs/requirements.txt (line 7)) (20.7) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from plantweb->-r docs/requirements.txt (line 4)) (1.15.0) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (1.2.0) Requirement already satisfied: sphinxcontrib-websupport in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (1.2.4) Requirement already satisfied: babel!=2.0,>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx->-r docs/requirements.txt (line 3)) (2.9.0) Requirement already satisfied: docutils in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from nbsphinx->-r docs/requirements.txt (line 6)) (0.14) Requirement already satisfied: requests in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from plantweb->-r docs/requirements.txt (line 4)) (2.25.0) Requirement already satisfied: alabaster<0.8,>=0.7 in 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/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from -r docs/requirements.txt (line 3)) (1.8.5) Collecting sphinxcontrib-napoleon Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from plantweb->-r docs/requirements.txt (line 4)) (1.15.0) Collecting alembic Downloading alembic-1.4.3-py2.py3-none-any.whl (159 kB) Requirement already satisfied: python-dateutil in /home/docs/.pyenv/versions/3.7.9/lib/python3.7/site-packages (from alembic->optuna->-r docs/requirements.txt (line 7)) (2.8.1) Collecting attrs>=17.4.0 Downloading attrs-20.3.0-py2.py3-none-any.whl (49 kB) Requirement already satisfied: pytz>=2015.7 in 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/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-websupport->sphinx->-r docs/requirements.txt (line 3)) (1.1.4) Collecting sqlalchemy>=1.1.0 Downloading SQLAlchemy-1.3.20-cp37-cp37m-manylinux2010_x86_64.whl (1.3 MB) Collecting stevedore>=2.0.1 Downloading stevedore-3.3.0-py3-none-any.whl (49 kB) Collecting testpath Downloading testpath-0.4.4-py2.py3-none-any.whl (163 kB) Collecting toml Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB) Collecting tornado>=4.1 Downloading tornado-6.1-cp37-cp37m-manylinux2010_x86_64.whl (428 kB) Collecting tqdm Downloading tqdm-4.54.1-py2.py3-none-any.whl (69 kB) Collecting traitlets Downloading traitlets-5.0.5-py3-none-any.whl (100 kB) Collecting wcwidth>=0.1.7 Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB) Collecting webencodings Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting zipp>=0.5 Downloading zipp-3.4.0-py3-none-any.whl (5.2 kB) Building wheels for collected packages: optuna, pandocfilters, PrettyTable, pyperclip, pyrsistent, PyYAML Building wheel for optuna (PEP 517): started Building wheel for optuna (PEP 517): finished with status 'done' Created wheel for optuna: filename=optuna-2.3.0-py3-none-any.whl size=359761 sha256=78b44c440a444b3b6d42536358062b17ebfa23a8a751ecfd514097dd031634af Stored in directory: /tmp/pip-ephem-wheel-cache-0jnqo1ae/wheels/38/61/9e/955ab1890f6cab231b1d756db63f36c711968a324296e0b649 Building wheel for pandocfilters (setup.py): started Building wheel for pandocfilters (setup.py): finished with status 'done' Created wheel for pandocfilters: filename=pandocfilters-1.4.3-py3-none-any.whl size=7991 sha256=7adcb7cefef2830ee64e150262e6c48be5c1935a1f6c01cbb298f7ddc8fbc66e Stored in directory: /tmp/pip-ephem-wheel-cache-0jnqo1ae/wheels/42/81/34/545dc2fbf0e9137811e901108d37fc04650e81d48f97078000 Building wheel for PrettyTable (setup.py): started Building wheel for PrettyTable (setup.py): finished with status 'done' Created wheel for PrettyTable: filename=prettytable-0.7.2-py3-none-any.whl size=13699 sha256=162cd25c564f5e4754285379b8cba28cfc0590470eddda6b5c391617579d3bde Stored in directory: /tmp/pip-ephem-wheel-cache-0jnqo1ae/wheels/b2/7f/f6/f180315b584f00445045ff1699b550fa895d09471337ce21c6 Building wheel for pyperclip (setup.py): started Building wheel for pyperclip (setup.py): finished with status 'done' Created wheel for pyperclip: filename=pyperclip-1.8.1-py3-none-any.whl size=11118 sha256=5b7d3951b5517a98003ae8b4753fc13621fa94b74d3fa1c0f30e5c822f836f27 Stored in directory: /tmp/pip-ephem-wheel-cache-0jnqo1ae/wheels/67/3f/92/2fae5a6ebb97a26aea363c444dcfa7c7b479feff12fcac6d0c Building wheel for pyrsistent (setup.py): started Building wheel for pyrsistent (setup.py): finished with status 'done' Created wheel for pyrsistent: filename=pyrsistent-0.17.3-cp37-cp37m-linux_x86_64.whl size=115335 sha256=5ffa8a274ed39749c8938fd2310375aa9d06773bb6748d0ef3976a6fb2401680 Stored in directory: /tmp/pip-ephem-wheel-cache-0jnqo1ae/wheels/a5/52/bf/71258a1d7b3c8cbe1ee53f9314c6f65f20385481eaee573cc5 Building wheel for PyYAML (setup.py): started Building wheel for PyYAML (setup.py): finished with status 'done' Created wheel for PyYAML: filename=PyYAML-5.3.1-cp37-cp37m-linux_x86_64.whl size=44621 sha256=bbcf9b5d6ca28abcc7db072aab097941797324349b05faa8d0eb17f5cea057d2 Stored in directory: /tmp/pip-ephem-wheel-cache-0jnqo1ae/wheels/5e/03/1e/e1e954795d6f35dfc7b637fe2277bff021303bd9570ecea653 Successfully built optuna pandocfilters PrettyTable pyperclip pyrsistent PyYAML Installing collected packages: zipp, ipython-genutils, traitlets, pyrsistent, importlib-metadata, attrs, tornado, pyzmq, jupyter-core, jsonschema, webencodings, wcwidth, pyperclip, pbr, nest-asyncio, nbformat, jupyter-client, colorama, async-generator, testpath, stevedore, sqlalchemy, PyYAML, python-editor, PrettyTable, pandocfilters, nbclient, mistune, Mako, jupyterlab-pygments, entrypoints, defusedxml, cmd2, bleach, tqdm, toml, py, pockets, pluggy, nbconvert, joblib, iniconfig, colorlog, cmaes, cliff, alembic, sphinxcontrib-napoleon, pytest, plantweb, optuna, nbsphinx Successfully installed Mako-1.1.3 PrettyTable-0.7.2 PyYAML-5.3.1 alembic-1.4.3 async-generator-1.10 attrs-20.3.0 bleach-3.2.1 cliff-3.5.0 cmaes-0.7.0 cmd2-1.4.0 colorama-0.4.4 colorlog-4.6.2 defusedxml-0.6.0 entrypoints-0.3 importlib-metadata-3.1.1 iniconfig-1.1.1 ipython-genutils-0.2.0 joblib-0.17.0 jsonschema-3.2.0 jupyter-client-6.1.7 jupyter-core-4.7.0 jupyterlab-pygments-0.1.2 mistune-0.8.4 nbclient-0.5.1 nbconvert-6.0.7 nbformat-5.0.8 nbsphinx-0.8.0 nest-asyncio-1.4.3 optuna-2.3.0 pandocfilters-1.4.3 pbr-5.5.1 plantweb-1.2.1 pluggy-0.13.1 pockets-0.9.1 py-1.9.0 pyperclip-1.8.1 pyrsistent-0.17.3 pytest-6.1.2 python-editor-1.0.4 pyzmq-20.0.0 sphinxcontrib-napoleon-0.7 sqlalchemy-1.3.20 stevedore-3.3.0 testpath-0.4.4 toml-0.10.2 tornado-6.1 tqdm-4.54.1 traitlets-5.0.5 wcwidth-0.2.5 webencodings-0.5.1 zipp-3.4.0 [rtd-command-info] start-time: 2020-12-05T23:12:12.243160Z, end-time: 2020-12-05T23:12:49.683294Z, duration: 37, exit-code: 1 python ./setup.py install --force running install running bdist_egg running egg_info creating covasim.egg-info writing covasim.egg-info/PKG-INFO writing dependency_links to covasim.egg-info/dependency_links.txt writing requirements to covasim.egg-info/requires.txt writing top-level names to covasim.egg-info/top_level.txt writing manifest file 'covasim.egg-info/SOURCES.txt' reading manifest file 'covasim.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 3: 'recursive-include' expects ... warning: manifest_maker: MANIFEST.in, line 5: 'recursive-include' expects ... warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'covasim.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/covasim copying covasim/run.py -> build/lib/covasim copying covasim/people.py -> build/lib/covasim copying covasim/analysis.py -> build/lib/covasim copying covasim/parameters.py -> build/lib/covasim copying covasim/misc.py -> build/lib/covasim copying covasim/defaults.py -> build/lib/covasim copying covasim/__init__.py -> build/lib/covasim copying covasim/base.py -> build/lib/covasim copying covasim/interventions.py -> build/lib/covasim copying covasim/version.py -> build/lib/covasim copying covasim/utils.py -> build/lib/covasim copying covasim/population.py -> build/lib/covasim copying covasim/settings.py -> build/lib/covasim copying covasim/requirements.py -> build/lib/covasim copying covasim/sim.py -> build/lib/covasim copying covasim/plotting.py -> build/lib/covasim creating build/lib/covasim/data copying covasim/data/loaders.py -> build/lib/covasim/data copying covasim/data/household_size_data.py -> build/lib/covasim/data copying covasim/data/__init__.py -> build/lib/covasim/data copying covasim/data/state_age_data.py -> build/lib/covasim/data copying covasim/data/country_age_data.py -> build/lib/covasim/data creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/run.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/people.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/analysis.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/parameters.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/misc.py -> build/bdist.linux-x86_64/egg/covasim creating build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/loaders.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/household_size_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/__init__.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/state_age_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/country_age_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/defaults.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/__init__.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/base.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/interventions.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/version.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/utils.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/population.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/settings.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/requirements.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/sim.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/plotting.py -> build/bdist.linux-x86_64/egg/covasim byte-compiling build/bdist.linux-x86_64/egg/covasim/run.py to run.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/people.py to people.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/analysis.py to analysis.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/parameters.py to parameters.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/misc.py to misc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/loaders.py to loaders.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/household_size_data.py to household_size_data.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/state_age_data.py to state_age_data.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/country_age_data.py to country_age_data.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/defaults.py to defaults.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/base.py to base.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/interventions.py to interventions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/version.py to version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/population.py to population.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/settings.py to settings.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/requirements.py to requirements.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/sim.py to sim.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/plotting.py to plotting.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... covasim.__pycache__.interventions.cpython-37: module MAY be using inspect.getouterframes covasim.__pycache__.misc.cpython-37: module references __file__ creating dist creating 'dist/covasim-2.0.0-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing covasim-2.0.0-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/covasim-2.0.0-py3.7.egg Extracting covasim-2.0.0-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding covasim 2.0.0 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/covasim-2.0.0-py3.7.egg Processing dependencies for covasim==2.0.0 Searching for sciris>=1.0.0 Reading https://pypi.org/simple/sciris/ Downloading https://files.pythonhosted.org/packages/4d/c6/a61bf5405a640fa42d8897b795bfb04ab1eb406e07e2d72c1b44cce6f651/sciris-1.0.0-py3-none-any.whl#sha256=42b04033ceb5ee0c09617ffa83f7bb63c511b06ecbe40b142f1c44844fd37a24 Best match: sciris 1.0.0 Processing sciris-1.0.0-py3-none-any.whl Installing sciris-1.0.0-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/sciris-1.0.0-py3.7.egg/EGG-INFO/requires.txt Adding sciris 1.0.0 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/sciris-1.0.0-py3.7.egg Searching for numba Reading https://pypi.org/simple/numba/ Downloading https://files.pythonhosted.org/packages/46/e1/cbbc7c7967d9b10e54c852bf5bece0222a63bfb809d3354014c957ef1bda/numba-0.52.0.tar.gz#sha256=44661c5bd85e3d3619be0a40eedee34e397e9ccb3d4c458b70e10bf95d1ce933 Best match: numba 0.52.0 Processing numba-0.52.0.tar.gz Writing /tmp/easy_install-6my9sv0a/numba-0.52.0/setup.cfg Running numba-0.52.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-6my9sv0a/numba-0.52.0/egg-dist-tmp-kfolmahz TBB not found Using OpenMP from: True warning: no files found matching '*.inc' under directory 'numba' warning: no files found matching '*.ipynb' under directory 'docs' warning: no files found matching '*.py' under directory 'examples' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs/gh-pages' zip_safe flag not set; analyzing archive contents... numba.__pycache__._dispatcher.cpython-37: module references __file__ numba.__pycache__._dynfunc.cpython-37: module references __file__ numba.__pycache__._helperlib.cpython-37: module references __file__ numba.__pycache__.mviewbuf.cpython-37: module references __file__ numba.cext.__pycache__.__init__.cpython-37: module references __file__ numba.core.__pycache__.caching.cpython-37: module MAY be using inspect.getsource numba.core.__pycache__.decorators.cpython-37: module MAY be using inspect.stack numba.core.__pycache__.errors.cpython-37: module references __file__ numba.core.__pycache__.extending.cpython-37: module references __file__ numba.core.__pycache__.tracing.cpython-37: module MAY be using inspect.trace numba.core.annotations.__pycache__.type_annotations.cpython-37: module references __file__ numba.core.runtime.__pycache__._nrt_python.cpython-37: module references __file__ numba.core.typeconv.__pycache__._typeconv.cpython-37: module references __file__ numba.core.typing.__pycache__.templates.cpython-37: module references __file__ numba.core.typing.__pycache__.templates.cpython-37: module MAY be using inspect.getsourcefile numba.cuda.__pycache__.compiler.cpython-37: module references __file__ numba.cuda.__pycache__.compiler.cpython-37: module MAY be using inspect.getsourcefile numba.cuda.cudadrv.__pycache__._extras.cpython-37: module references __file__ numba.cuda.tests.__pycache__.__init__.cpython-37: module references __file__ numba.cuda.tests.cudadrv.__pycache__.__init__.cpython-37: module references __file__ numba.cuda.tests.cudadrv.__pycache__.test_linker.cpython-37: module references __file__ numba.cuda.tests.cudapy.__pycache__.__init__.cpython-37: module references __file__ numba.cuda.tests.cudasim.__pycache__.__init__.cpython-37: module references __file__ numba.cuda.tests.nocuda.__pycache__.__init__.cpython-37: module references __file__ numba.experimental.jitclass.__pycache__._box.cpython-37: module references __file__ numba.misc.__pycache__.gdb_hook.cpython-37: module references __file__ numba.misc.help.__pycache__.inspector.cpython-37: module references __path__ numba.np.ufunc.__pycache__._internal.cpython-37: module references __file__ numba.np.ufunc.__pycache__._num_threads.cpython-37: module references __file__ numba.np.ufunc.__pycache__.omppool.cpython-37: module references __file__ numba.np.ufunc.__pycache__.workqueue.cpython-37: module references __file__ numba.parfors.__pycache__.parfor.cpython-37: module MAY be using inspect.getsource numba.pycc.__pycache__.cc.cpython-37: module references __file__ numba.roc.tests.__pycache__.__init__.cpython-37: module references __file__ numba.roc.tests.hsadrv.__pycache__.__init__.cpython-37: module references __file__ numba.roc.tests.hsapy.__pycache__.__init__.cpython-37: module references __file__ numba.roc.tests.hsapy.__pycache__.test_large_code.cpython-37: module references __file__ numba.scripts.__pycache__.generate_lower_listing.cpython-37: module references __file__ numba.scripts.__pycache__.generate_lower_listing.cpython-37: module MAY be using inspect.getsourcefile numba.testing.__pycache__.loader.cpython-37: module references __file__ numba.testing.__pycache__.main.cpython-37: module references __file__ numba.testing.__pycache__.main.cpython-37: module MAY be using inspect.getsourcefile numba.tests.__pycache__.__init__.cpython-37: module references __file__ numba.tests.__pycache__.cffi_usecases.cpython-37: module references __file__ numba.tests.__pycache__.ctypes_usecases.cpython-37: module references __file__ numba.tests.__pycache__.support.cpython-37: module references __file__ numba.tests.__pycache__.test_cfunc.cpython-37: module references __file__ numba.tests.__pycache__.test_dispatcher.cpython-37: module references __file__ numba.tests.__pycache__.test_jit_module.cpython-37: module references __file__ numba.tests.__pycache__.test_parallel_backend.cpython-37: module references __file__ numba.tests.__pycache__.test_parfors_caching.cpython-37: module references __file__ numba.tests.__pycache__.test_pycc.cpython-37: module references __file__ numba.tests.__pycache__.test_stencils.cpython-37: module MAY be using inspect.getsource numba.tests.__pycache__.test_types.cpython-37: module references __file__ numba.tests.doc_examples.__pycache__.__init__.cpython-37: module references __file__ numba.tests.npyufunc.__pycache__.__init__.cpython-37: module references __file__ numba.tests.npyufunc.__pycache__.test_caching.cpython-37: module references __file__ creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/numba-0.52.0-py3.7-linux-x86_64.egg Extracting numba-0.52.0-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding numba 0.52.0 to easy-install.pth file Installing numba script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installing pycc script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/numba-0.52.0-py3.7-linux-x86_64.egg Searching for statsmodels Reading https://pypi.org/simple/statsmodels/ Downloading https://files.pythonhosted.org/packages/93/97/67bf20df36a88ce8dd84828f83453b91177e1ff0abd8c92f2e0a47782689/statsmodels-0.12.1-cp37-cp37m-manylinux1_x86_64.whl#sha256=588c0f7e29403161ca952dcdad3d67970583742e9f11f66c7c5b08ac97a0408c Best match: statsmodels 0.12.1 Processing statsmodels-0.12.1-cp37-cp37m-manylinux1_x86_64.whl Installing statsmodels-0.12.1-cp37-cp37m-manylinux1_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/statsmodels-0.12.1-py3.7-linux-x86_64.egg/EGG-INFO/requires.txt Adding statsmodels 0.12.1 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/statsmodels-0.12.1-py3.7-linux-x86_64.egg Searching for xlsxwriter Reading https://pypi.org/simple/xlsxwriter/ Downloading https://files.pythonhosted.org/packages/6b/41/bf1aae04932d1eaffee1fc5f8b38ca47bbbf07d765129539bc4bcce1ce0c/XlsxWriter-1.3.7-py2.py3-none-any.whl#sha256=b807c2d3e379bf6a925f472955beef3e07495c1bac708640696876e68675b49b Best match: XlsxWriter 1.3.7 Processing XlsxWriter-1.3.7-py2.py3-none-any.whl Installing XlsxWriter-1.3.7-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding XlsxWriter 1.3.7 to easy-install.pth file Installing vba_extract.py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/XlsxWriter-1.3.7-py3.7.egg Searching for xlrd Reading https://pypi.org/simple/xlrd/ Downloading https://files.pythonhosted.org/packages/b0/16/63576a1a001752e34bf8ea62e367997530dc553b689356b9879339cf45a4/xlrd-1.2.0-py2.py3-none-any.whl#sha256=e551fb498759fa3a5384a94ccd4c3c02eb7c00ea424426e212ac0c57be9dfbde Best match: xlrd 1.2.0 Processing xlrd-1.2.0-py2.py3-none-any.whl Installing xlrd-1.2.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding xlrd 1.2.0 to easy-install.pth file Installing runxlrd.py script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/xlrd-1.2.0-py3.7.egg Searching for psutil Reading https://pypi.org/simple/psutil/ Downloading https://files.pythonhosted.org/packages/33/e0/82d459af36bda999f82c7ea86c67610591cf5556168f48fd6509e5fa154d/psutil-5.7.3.tar.gz#sha256=af73f7bcebdc538eda9cc81d19db1db7bf26f103f91081d780bbacfcb620dee2 Best match: psutil 5.7.3 Processing psutil-5.7.3.tar.gz Writing /tmp/easy_install-foq6u4jb/psutil-5.7.3/setup.cfg Running psutil-5.7.3/setup.py -q bdist_egg --dist-dir /tmp/easy_install-foq6u4jb/psutil-5.7.3/egg-dist-tmp-rywj0_aw creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/psutil-5.7.3-py3.7-linux-x86_64.egg Extracting psutil-5.7.3-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding psutil 5.7.3 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/psutil-5.7.3-py3.7-linux-x86_64.egg Searching for openpyexcel>=2.5 Reading https://pypi.org/simple/openpyexcel/ Downloading https://files.pythonhosted.org/packages/32/e1/722047fae7a46b658d7fa038cf5b952fbbb150c3c8a31012e4fb76eba27d/openpyexcel-2.5.14-py2.py3-none-any.whl#sha256=f18f4efadbc25a26870885f342e14b6cd6862ca1f4b8195b394fc2681ccdbaab Best match: openpyexcel 2.5.14 Processing openpyexcel-2.5.14-py2.py3-none-any.whl Installing openpyexcel-2.5.14-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/openpyexcel-2.5.14-py3.7.egg/EGG-INFO/requires.txt Adding openpyexcel 2.5.14 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/openpyexcel-2.5.14-py3.7.egg Searching for multiprocess Reading https://pypi.org/simple/multiprocess/ Downloading https://files.pythonhosted.org/packages/db/20/458ac043a57322365ac2ed86a911bf7598fc2e49bccb3f94ea810fbb6b9b/multiprocess-0.70.11.1-py37-none-any.whl#sha256=164c77448e357ebee0dc6abc7ee8c823e40e295e629a5fc6d31725109a3a7ee9 Best match: multiprocess 0.70.11.1 Processing multiprocess-0.70.11.1-py37-none-any.whl Installing multiprocess-0.70.11.1-py37-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/multiprocess-0.70.11.1-py3.7.egg/EGG-INFO/requires.txt Adding multiprocess 0.70.11.1 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/multiprocess-0.70.11.1-py3.7.egg Searching for memory-profiler Reading https://pypi.org/simple/memory-profiler/ Downloading https://files.pythonhosted.org/packages/8f/fd/d92b3295657f8837e0177e7b48b32d6651436f0293af42b76d134c3bb489/memory_profiler-0.58.0.tar.gz#sha256=01385ac0fec944fcf7969814ec4406c6d8a9c66c079d09276723c5a7680f44e5 Best match: memory-profiler 0.58.0 Processing memory_profiler-0.58.0.tar.gz Writing /tmp/easy_install-_r3rvowx/memory_profiler-0.58.0/setup.cfg Running memory_profiler-0.58.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-_r3rvowx/memory_profiler-0.58.0/egg-dist-tmp-o2jne7z1 warning: no files found matching 'mprof.bat' zip_safe flag not set; analyzing archive contents... __pycache__.memory_profiler.cpython-37: module MAY be using inspect.getsourcefile __pycache__.memory_profiler.cpython-37: module MAY be using inspect.stack __pycache__.memory_profiler.cpython-37: module MAY be using inspect.trace creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/memory_profiler-0.58.0-py3.7.egg Extracting memory_profiler-0.58.0-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding memory-profiler 0.58.0 to easy-install.pth file Installing mprof script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/memory_profiler-0.58.0-py3.7.egg Searching for line-profiler Reading https://pypi.org/simple/line-profiler/ Downloading https://files.pythonhosted.org/packages/fb/89/cb7787463c0bc676d3200d278d26a732ce4921ba5efce6eb8e1fc29b6fff/line_profiler-3.1.0-cp37-cp37m-manylinux1_x86_64.whl#sha256=2b937d8b207cee753d175cc65907901bd9ccadfe20ff2038df9aeae2eafcba6b Best match: line-profiler 3.1.0 Processing line_profiler-3.1.0-cp37-cp37m-manylinux1_x86_64.whl Installing line_profiler-3.1.0-cp37-cp37m-manylinux1_x86_64.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/line_profiler-3.1.0-py3.7-linux-x86_64.egg/EGG-INFO/requires.txt Adding line-profiler 3.1.0 to easy-install.pth file Installing kernprof script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/line_profiler-3.1.0-py3.7-linux-x86_64.egg Searching for jsonpickle Reading https://pypi.org/simple/jsonpickle/ Downloading https://files.pythonhosted.org/packages/ee/d5/1cc282dc23346a43aab461bf2e8c36593aacd34242bee1a13fa750db0cfe/jsonpickle-1.4.2-py2.py3-none-any.whl#sha256=2ac5863099864c63d7f0c367af5e512c94f3384977dd367f2eae5f2303f7b92c Best match: jsonpickle 1.4.2 Processing jsonpickle-1.4.2-py2.py3-none-any.whl Installing jsonpickle-1.4.2-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/jsonpickle-1.4.2-py3.7.egg/EGG-INFO/requires.txt Adding jsonpickle 1.4.2 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/jsonpickle-1.4.2-py3.7.egg Searching for jellyfish Reading https://pypi.org/simple/jellyfish/ Downloading https://files.pythonhosted.org/packages/04/3f/d03cb056f407ef181a45569255348457b1a0915fc4eb23daeceb930a68a4/jellyfish-0.8.2.tar.gz#sha256=a499741401512d05bbd3556e448e960bc908eba3879fb73d450e8e91566a030b Best match: jellyfish 0.8.2 Processing jellyfish-0.8.2.tar.gz Writing /tmp/easy_install-36ktesm2/jellyfish-0.8.2/setup.cfg Running jellyfish-0.8.2/setup.py -q bdist_egg --dist-dir /tmp/easy_install-36ktesm2/jellyfish-0.8.2/egg-dist-tmp-5yso83tw warning: no previously-included files matching '.git' found anywhere in distribution cjellyfish/soundex.c: In function ‘soundex’: cjellyfish/soundex.c:8:10: warning: ‘c’ may be used uninitialized in this function [-Wmaybe-uninitialized] char c, prev; ^ cjellyfish/porter.c: In function ‘m’: cjellyfish/porter.c:127:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (! cons(z, i)) break; i++; ^~ cjellyfish/porter.c:127:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (! cons(z, i)) break; i++; ^ cjellyfish/porter.c: In function ‘step4’: cjellyfish/porter.c:339:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (ends(z, 4, "ence")) break; return; ^~ cjellyfish/porter.c:339:48: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (ends(z, 4, "ence")) break; return; ^~~~~~ cjellyfish/porter.c:343:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (ends(z, 4, "ible")) break; return; ^~ cjellyfish/porter.c:343:48: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (ends(z, 4, "ible")) break; return; ^~~~~~ cjellyfish/porter.c:347:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (ends(z, 3, "ent")) break; return; ^~ cjellyfish/porter.c:347:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (ends(z, 3, "ent")) break; return; ^~~~~~ cjellyfish/porter.c:349:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (ends(z, 2, "ou")) break; return; ^~ cjellyfish/porter.c:349:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (ends(z, 2, "ou")) break; return; ^~~~~~ cjellyfish/porter.c:353:17: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] if (ends(z, 3, "iti")) break; return; ^~ cjellyfish/porter.c:353:47: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ if (ends(z, 3, "iti")) break; return; ^~~~~~ zip_safe flag not set; analyzing archive contents... jellyfish.__pycache__.cjellyfish.cpython-37: module references __file__ creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/jellyfish-0.8.2-py3.7-linux-x86_64.egg Extracting jellyfish-0.8.2-py3.7-linux-x86_64.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding jellyfish 0.8.2 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/jellyfish-0.8.2-py3.7-linux-x86_64.egg Searching for gitpython Reading https://pypi.org/simple/gitpython/ Downloading https://files.pythonhosted.org/packages/24/d1/a7f8fe3df258549b303415157328bfcc63e9b11d06a7ad7a3327f3d32606/GitPython-3.1.11-py3-none-any.whl#sha256=6eea89b655917b500437e9668e4a12eabdcf00229a0df1762aabd692ef9b746b Best match: GitPython 3.1.11 Processing GitPython-3.1.11-py3-none-any.whl Installing GitPython-3.1.11-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/GitPython-3.1.11-py3.7.egg/EGG-INFO/requires.txt Adding GitPython 3.1.11 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/GitPython-3.1.11-py3.7.egg Searching for dill Reading https://pypi.org/simple/dill/ Downloading https://files.pythonhosted.org/packages/52/d6/79f40d230895fa1ce3b6af0d22e0ac79c65175dc069c194b79cc8e05a033/dill-0.3.3-py2.py3-none-any.whl#sha256=78370261be6ea49037ace8c17e0b7dd06d0393af6513cc23f9b222d9367ce389 Best match: dill 0.3.3 Processing dill-0.3.3-py2.py3-none-any.whl Installing dill-0.3.3-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/dill-0.3.3-py3.7.egg/EGG-INFO/requires.txt Adding dill 0.3.3 to easy-install.pth file Installing undill script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installing get_objgraph script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/dill-0.3.3-py3.7.egg Searching for llvmlite<0.36,>=0.35.0 Reading https://pypi.org/simple/llvmlite/ Downloading https://files.pythonhosted.org/packages/cd/3e/631087324bd3ffaf9a9c1c9d7d6675863e41afb31c818dd700019193e6b4/llvmlite-0.35.0.tar.gz#sha256=80e51d5aa02ad72da9870e89d21f9b152b0220ca551b4596a6c0614bcde336fc Best match: llvmlite 0.35.0 Processing llvmlite-0.35.0.tar.gz Writing /tmp/easy_install-uj2hp4kk/llvmlite-0.35.0/setup.cfg Running llvmlite-0.35.0/setup.py -q bdist_egg --dist-dir /tmp/easy_install-uj2hp4kk/llvmlite-0.35.0/egg-dist-tmp-5qkdg20d error: Setup script exited with setup.py disabled on readthedocs: called with ['/tmp/easy_install-uj2hp4kk/llvmlite-0.35.0/setup.py', '-q', 'bdist_egg', '--dist-dir', '/tmp/easy_install-uj2hp4kk/llvmlite-0.35.0/egg-dist-tmp-5qkdg20d']