Read the Docs build information Build id: 4603975 Project: icb-anndata Version: 2712 Commit: 30da5d52db3d550f617a47133e69a2cfe29256d6 Date: 2026-10-21T10:45:06.380132Z State: finished Success: False [rtd-command-info] start-time: 2026-10-21T10:45:19.182786Z, end-time: 2026-10-21T10:45:19.896561Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2026-10-21T10:45:20.127755Z, end-time: 2026-10-21T10:45:21.219965Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/2712/head:external-2712 From https://github.com/scverse/anndata * [new ref] refs/pull/2712/head -> external-2712 * [new tag] 0.13.0 -> 0.13.0 * [new tag] 0.13.1 -> 0.13.1 * [new tag] 0.13.2 -> 0.13.2 * [new tag] 0.13.3 -> 0.13.3 * [new tag] 0.13.3.post0 -> 0.13.3.post0 * [new tag] 0.13.4 -> 0.13.4 [rtd-command-info] start-time: 2026-10-21T10:45:21.959458Z, end-time: 2026-10-21T10:45:22.030214Z, duration: 0, exit-code: 0 git checkout --force 30da5d52db3d550f617a47133e69a2cfe29256d6 Note: switching to '30da5d52db3d550f617a47133e69a2cfe29256d6'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 30da5d5 Backport PR #2708: fix: update column order on writes [rtd-command-info] start-time: 2026-10-21T10:45:22.115756Z, end-time: 2026-10-21T10:45:22.152649Z, duration: 0, exit-code: 0 cat .readthedocs.yml # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 build: os: ubuntu-24.04 tools: python: "3.14" jobs: post_checkout: # unshallow so version can be derived from tag - git fetch --unshallow || true create_environment: - asdf plugin add uv - asdf install uv latest - asdf global uv latest pre_build: # run towncrier to preview the next version’s release notes - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true build: html: - uvx hatch run docs:build - mv docs/_build $READTHEDOCS_OUTPUT submodules: include: - "docs/tutorials/notebooks" recursive: true [rtd-command-info] start-time: 2026-10-21T10:45:22.351983Z, end-time: 2026-10-21T10:45:22.421125Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2026-10-21T10:45:22.621932Z, end-time: 2026-10-21T10:45:24.485450Z, duration: 1, exit-code: 0 git submodule update --init --force --recursive -- docs/tutorials/notebooks Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks' Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/tutorials/notebooks'... From https://github.com/scverse/anndata-tutorials * branch a4f6d62a8f5cf922d7e3ba48db72b91e0dd458e1 -> FETCH_HEAD Submodule path 'docs/tutorials/notebooks': checked out 'a4f6d62a8f5cf922d7e3ba48db72b91e0dd458e1' [rtd-command-info] start-time: 2026-10-21T10:45:24.593450Z, end-time: 2026-10-21T10:45:26.334617Z, duration: 1, exit-code: 0 git fetch --unshallow || true From https://github.com/scverse/anndata * [new tag] 0.10.0 -> 0.10.0 * [new tag] 0.10.0.dev0 -> 0.10.0.dev0 * [new tag] 0.10.0rc1 -> 0.10.0rc1 * [new tag] 0.11.0 -> 0.11.0 * [new tag] 0.11.0.dev0 -> 0.11.0.dev0 * [new tag] 0.11.0rc1 -> 0.11.0rc1 * [new tag] 0.11.0rc2 -> 0.11.0rc2 * [new tag] 0.11.0rc3 -> 0.11.0rc3 * [new tag] 0.12.0 -> 0.12.0 * [new tag] 0.12.0rc1 -> 0.12.0rc1 * [new tag] 0.12.0rc2 -> 0.12.0rc2 * [new tag] 0.12.0rc3 -> 0.12.0rc3 * [new tag] 0.12.0rc4 -> 0.12.0rc4 * [new tag] 0.12.15 -> 0.12.15 * [new tag] 0.13.0rc1 -> 0.13.0rc1 * [new tag] 0.13.0rc2 -> 0.13.0rc2 * [new tag] 0.13.0rc3 -> 0.13.0rc3 * [new tag] 0.3 -> 0.3 * [new tag] 0.3.0.1 -> 0.3.0.1 * [new tag] 0.3.0.3 -> 0.3.0.3 * [new tag] 0.3.1 -> 0.3.1 * [new tag] 0.3.2 -> 0.3.2 * [new tag] 0.3.3 -> 0.3.3 * [new tag] 0.3.4 -> 0.3.4 * [new tag] 0.4.1 -> 0.4.1 * [new tag] 0.4.2 -> 0.4.2 * [new tag] 0.4.3 -> 0.4.3 * [new tag] 0.4.4 -> 0.4.4 * [new tag] 0.5 -> 0.5 * [new tag] 0.5.1 -> 0.5.1 * [new tag] 0.5.10 -> 0.5.10 * [new tag] 0.5.2 -> 0.5.2 * [new tag] 0.5.3 -> 0.5.3 * [new tag] 0.5.4 -> 0.5.4 * [new tag] 0.5.5 -> 0.5.5 * [new tag] 0.5.6 -> 0.5.6 * [new tag] 0.5.7 -> 0.5.7 * [new tag] 0.5.8 -> 0.5.8 * [new tag] 0.5.9 -> 0.5.9 * [new tag] 0.6 -> 0.6 * [new tag] 0.6.1 -> 0.6.1 * [new tag] 0.6.10 -> 0.6.10 * [new tag] 0.6.11 -> 0.6.11 * [new tag] 0.6.12 -> 0.6.12 * [new tag] 0.6.13 -> 0.6.13 * [new tag] 0.6.14 -> 0.6.14 * [new tag] 0.6.15 -> 0.6.15 * [new tag] 0.6.17 -> 0.6.17 * [new tag] 0.6.18 -> 0.6.18 * [new tag] 0.6.19 -> 0.6.19 * [new tag] 0.6.2 -> 0.6.2 * [new tag] 0.6.20 -> 0.6.20 * [new tag] 0.6.21 -> 0.6.21 * [new tag] 0.6.22 -> 0.6.22 * [new tag] 0.6.22.post1 -> 0.6.22.post1 * [new tag] 0.6.22rc1 -> 0.6.22rc1 * [new tag] 0.6.3 -> 0.6.3 * [new tag] 0.6.4 -> 0.6.4 * [new tag] 0.6.5 -> 0.6.5 * [new tag] 0.6.6 -> 0.6.6 * [new tag] 0.6.7 -> 0.6.7 * [new tag] 0.6.8 -> 0.6.8 * [new tag] 0.6.9 -> 0.6.9 * [new tag] 0.7 -> 0.7 * [new tag] 0.7.1 -> 0.7.1 * [new tag] 0.7.2 -> 0.7.2 * [new tag] 0.7.2a1 -> 0.7.2a1 * [new tag] 0.7.3 -> 0.7.3 * [new tag] 0.7.4 -> 0.7.4 * [new tag] 0.7.5 -> 0.7.5 * [new tag] 0.7.6 -> 0.7.6 * [new tag] 0.7.7 -> 0.7.7 * [new tag] 0.7.8 -> 0.7.8 * [new tag] 0.7rc1 -> 0.7rc1 * [new tag] 0.7rc2 -> 0.7rc2 * [new tag] 0.8.0 -> 0.8.0 * [new tag] 0.8.0.dev0 -> 0.8.0.dev0 * [new tag] 0.8.0rc1 -> 0.8.0rc1 * [new tag] 0.9.0.dev0 -> 0.9.0.dev0 * [new tag] 0.9.0rc1 -> 0.9.0rc1 [rtd-command-info] start-time: 2026-10-21T10:45:30.462558Z, end-time: 2026-10-21T10:45:30.517610Z, duration: 0, exit-code: 0 asdf global python 3.14.6 [rtd-command-info] start-time: 2026-10-21T10:45:30.847227Z, end-time: 2026-10-21T10:45:31.992736Z, duration: 1, exit-code: 0 asdf plugin add uv updating plugin repository...From https://github.com/asdf-vm/asdf-plugins 8e311ee..3715919 master -> origin/master * [new branch] dependabot/github_actions/actions/checkout-6 -> origin/dependabot/github_actions/actions/checkout-6 * [new branch] dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 -> origin/dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 * [new branch] dependabot/github_actions/asdf-vm/actions-4 -> origin/dependabot/github_actions/asdf-vm/actions-4 * [new branch] tb/remove-deleted-plugins -> origin/tb/remove-deleted-plugins HEAD is now at 3715919 feat: add elp plugin (#1089) [rtd-command-info] start-time: 2026-10-21T10:45:32.145237Z, end-time: 2026-10-21T10:45:32.988201Z, duration: 0, exit-code: 0 asdf install uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.13.4 * Downloading uv release 0.13.4... uv 0.13.4 installation was successful! [rtd-command-info] start-time: 2026-10-21T10:45:33.108789Z, end-time: 2026-10-21T10:45:33.231603Z, duration: 0, exit-code: 0 asdf global uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.13.4 [rtd-command-info] start-time: 2026-10-21T10:45:33.409818Z, end-time: 2026-10-21T10:45:38.627370Z, duration: 5, exit-code: 0 ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true Downloading pygments (1.2MiB) Downloading cryptography (4.5MiB) Downloading virtualenv (5.3MiB) Downloading uv (16.4MiB) Downloaded pygments Downloaded virtualenv Downloaded cryptography Downloaded uv Installed 43 packages in 18ms Creating environment: docs Installing project in development mode Checking dependencies Syncing dependencies Loading template... Finding news fragments... Rendering news fragments... Writing to newsfile... Staging newsfile... Keeping the following files: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/release-notes/2671.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/release-notes/2708.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/release-notes/2652.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/release-notes/2678.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/release-notes/2665.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/release-notes/2641.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/release-notes/2680.fix.md Done! [rtd-command-info] start-time: 2026-10-21T10:45:38.738111Z, end-time: 2026-10-21T10:45:50.554358Z, duration: 11, exit-code: 2 uvx hatch run docs:build Running Sphinx v9.2.0 loading translations [en]... done matplotlib is not installed, social cards will not be generated making output directory... done myst v5.1.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'dollarmath', 'colon_fence', 'html_image'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, strikethrough_single_tilde=False, colon_fence_exact_match=False, suppress_warnings=[], highlight_code_blocks=True) myst-nb v1.4.0: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, eval_name_regex='^[a-zA-Z_][a-zA-Z0-9_]*$', execution_mode='off', execution_cache_path='', execution_excludepatterns=(), execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, scroll_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False) Using jupyter-cache at: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/_build/.jupyter_cache loading intersphinx inventory 'array_api' from https://array-api.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'cupy' from https://docs.cupy.dev/en/stable/objects.inv ... loading intersphinx inventory 'awkward' from https://awkward-array.org/doc/stable/objects.inv ... loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... loading intersphinx inventory 'fsspec' from https://filesystem-spec.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'h5py' from https://docs.h5py.org/en/latest/objects.inv ... loading intersphinx inventory 'hdf5plugin' from https://hdf5plugin.readthedocs.io/en/latest/objects.inv ... loading intersphinx inventory 'kvikio' from https://docs.rapids.ai/api/kvikio/stable/objects.inv ... loading intersphinx inventory 'loompy' from https://linnarssonlab.org/loompy/objects.inv ... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'obstore' from https://developmentseed.org/obstore/latest/objects.inv ... loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... loading intersphinx inventory 'scverse_misc' from https://scverse-misc.readthedocs.io/stable/objects.inv ... loading intersphinx inventory 'sklearn' from https://scikit-learn.org/stable/objects.inv ... loading intersphinx inventory 'xarray' from https://docs.xarray.dev/en/stable/objects.inv ... loading intersphinx inventory 'zarr' from https://zarr.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'zarrs' from https://zarrs-python.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'annbatch' from https://annbatch.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'mudata' from https://mudata.readthedocs.io/stable/objects.inv ... intersphinx inventory has moved: https://docs.rapids.ai/api/kvikio/stable/objects.inv -> https://docs.nvidia.com/kvikio/latest/objects.inv intersphinx inventory has moved: https://mudata.readthedocs.io/stable/objects.inv -> https://mudata.scverse.org/stable/objects.inv [autosummary] generating autosummary for: _key_contributors.rst, accessors.rst, api.md, benchmark-read-write.ipynb, benchmarks.md, contributing.md, fileformat-prose.md, generated/anndata.types.ExtensionNamespace.rst, index.md, interoperability.md, ..., tutorials/index.md, tutorials/notebooks/annbatch.ipynb, tutorials/notebooks/anncollection.ipynb, tutorials/notebooks/anndata_dask_array.ipynb, tutorials/notebooks/awkward-arrays.ipynb, tutorials/notebooks/getting-started.ipynb, tutorials/notebooks/read_lazy.ipynb, tutorials/notebooks/{read,write}_dispatched.ipynb, tutorials/zarr-v3.md, typing.md [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.unwriteable.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.write_csvs.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.write_h5ad.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.write_loom.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.write_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.ImplicitModificationWarning.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.abc.CSCDataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.abc.CSRDataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.acc.AdAcc.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.io.sparse_dataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.io.write_elem.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.io.write_h5ad.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.io.write_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.register_anndata_namespace.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.settings.override.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.settings.reset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.settings.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApi.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApiBase.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.T.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.chunk_X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.chunked_X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.copy.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.filename.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.is_view.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.isbacked.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.isview.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.AnnData.layers.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApi.__dlpack_device__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApi.device.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApi.shape.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApi.size.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApiBase.__array_namespace__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApiBase.__getitem__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApiBase.device.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApiBase.shape.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApiBase.size.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2712/docs/generated/anndata.types.SupportsArrayApiBase.to_device.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 23 source files that are out of date updating environment: [new config] 142 added, 0 changed, 0 removed reading sources... [ 1%] _key_contributors reading sources... [ 1%] accessors Extension error (skip_private_bases)! Versions ======== * Platform: linux; (Linux-7.0.0-1004-aws-x86_64-with-glibc2.39) * Python version: 3.14.6 (CPython) * Sphinx version: 9.2.0 * Docutils version: 0.22.4 * Jinja2 version: 3.1.6 * Pygments version: 2.21.0 Last Messages ============= building [html]: targets for 23 source files that are out of date updating environment: [new config] 142 added, 0 changed, 0 removed reading sources... [ 1%] _key_contributors reading sources... [ 1%] accessors Loaded Extensions ================= * sphinx.ext.mathjax (9.2.0) * alabaster (1.0.0) * sphinxcontrib.applehelp (2.0.0) * sphinxcontrib.devhelp (2.0.0) * sphinxcontrib.htmlhelp (2.1.0) * sphinxcontrib.serializinghtml (2.0.0) * sphinxcontrib.qthelp (2.0.0) * myst_nb (1.4.0) * sphinx_copybutton (0.5.2) * sphinx.ext.autodoc (9.2.0) * sphinx.ext.intersphinx (9.2.0) * sphinx.ext.doctest (9.2.0) * sphinx.ext.coverage (9.2.0) * sphinx.ext.napoleon (9.2.0) * sphinx.ext.autosummary (9.2.0) * sphinx_autodoc_typehints (3.17.2) * sphinx_issues (6.0.0) * sphinx_design (0.7.0) * sphinxext.opengraph (0.13.0) * scanpydoc.definition_list_typed_field (0.17.5) * scanpydoc.elegant_typehints (0.17.5) * scanpydoc.rtd_github_links (0.17.5) * scanpydoc.theme (unknown version) * scanpydoc.release_notes (0.17.5) * scanpydoc (0.17.5) * scverse_doc.autodoc (unknown version) * scverse_doc.napoleon (unknown version) * scverse_misc.sphinx_ext (0.1.7) * sphinx.ext.linkcode (9.2.0) * IPython.sphinxext.ipython_console_highlighting (unknown version) * patch_myst_cite (unknown version) * skip_private_bases (unknown version) * no_skip_abc_members (unknown version) * sphinx_book_theme (unknown version) * pydata_sphinx_theme (unknown version) Traceback ========= File "/home/docs/.local/share/hatch/env/virtual/anndata/-31eNc7a/docs/lib/python3.14/site-packages/sphinx/events.py", line 452, in emit raise ExtensionError( ...<3 lines>... ) from exc sphinx.errors.ExtensionError: Handler for event 'autodoc-process-bases' threw an exception (exception: 'str' object has no attribute '__name__') The full traceback has been saved in: /tmp/sphinx-err-kvksr17b.log To report this error to the developers, please open an issue at . Thanks! Please also report this if it was a user error, so that a better error message can be provided next time.