Read the Docs build information Build id: 4591329 Project: icb-anndata Version: 2708 Commit: c894181a637d757716a6f7758b790e10d07b29c4 Date: 2026-10-19T14:09:13.692469Z State: finished Success: False [rtd-command-info] start-time: 2026-10-19T14:09:14.396298Z, end-time: 2026-10-19T14:09:16.137834Z, duration: 1, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2026-10-19T14:09:16.219991Z, end-time: 2026-10-19T14:09:16.781232Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/2708/head:external-2708 From https://github.com/scverse/anndata * [new ref] refs/pull/2708/head -> external-2708 [rtd-command-info] start-time: 2026-10-19T14:09:18.374783Z, end-time: 2026-10-19T14:09:18.462195Z, duration: 0, exit-code: 0 git checkout --force c894181a637d757716a6f7758b790e10d07b29c4 Note: switching to 'c894181a637d757716a6f7758b790e10d07b29c4'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at c894181 fix: relnote [rtd-command-info] start-time: 2026-10-19T14:09:18.552426Z, end-time: 2026-10-19T14:09:18.591170Z, duration: 0, exit-code: 0 cat .readthedocs.yml # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 build: os: ubuntu-26.04 tools: python: "3.14" jobs: post_checkout: # unshallow so version can be derived from tag - git fetch --unshallow || true create_environment: - asdf plugin add uv - asdf install uv latest - asdf global uv latest pre_build: # run towncrier to preview the next version’s release notes - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true build: html: - uvx --from=hatch!=1.18.0 hatch run docs:build -T - mv docs/_build $READTHEDOCS_OUTPUT [rtd-command-info] start-time: 2026-10-19T14:09:18.674765Z, end-time: 2026-10-19T14:09:20.205225Z, duration: 1, exit-code: 0 git fetch --unshallow || true From https://github.com/scverse/anndata * [new tag] 0.10.0 -> 0.10.0 * [new tag] 0.10.0.dev0 -> 0.10.0.dev0 * [new tag] 0.10.0rc1 -> 0.10.0rc1 * [new tag] 0.11.0 -> 0.11.0 * [new tag] 0.11.0.dev0 -> 0.11.0.dev0 * [new tag] 0.11.0rc1 -> 0.11.0rc1 * [new tag] 0.11.0rc2 -> 0.11.0rc2 * [new tag] 0.11.0rc3 -> 0.11.0rc3 * [new tag] 0.12.0 -> 0.12.0 * [new tag] 0.12.0rc1 -> 0.12.0rc1 * [new tag] 0.12.0rc2 -> 0.12.0rc2 * [new tag] 0.12.0rc3 -> 0.12.0rc3 * [new tag] 0.12.0rc4 -> 0.12.0rc4 * [new tag] 0.12.15 -> 0.12.15 * [new tag] 0.13.0 -> 0.13.0 * [new tag] 0.13.0rc1 -> 0.13.0rc1 * [new tag] 0.13.0rc2 -> 0.13.0rc2 * [new tag] 0.13.0rc3 -> 0.13.0rc3 * [new tag] 0.3 -> 0.3 * [new tag] 0.3.0.1 -> 0.3.0.1 * [new tag] 0.3.0.3 -> 0.3.0.3 * [new tag] 0.3.1 -> 0.3.1 * [new tag] 0.3.2 -> 0.3.2 * [new tag] 0.3.3 -> 0.3.3 * [new tag] 0.3.4 -> 0.3.4 * [new tag] 0.4.1 -> 0.4.1 * [new tag] 0.4.2 -> 0.4.2 * [new tag] 0.4.3 -> 0.4.3 * [new tag] 0.4.4 -> 0.4.4 * [new tag] 0.5 -> 0.5 * [new tag] 0.5.1 -> 0.5.1 * [new tag] 0.5.10 -> 0.5.10 * [new tag] 0.5.2 -> 0.5.2 * [new tag] 0.5.3 -> 0.5.3 * [new tag] 0.5.4 -> 0.5.4 * [new tag] 0.5.5 -> 0.5.5 * [new tag] 0.5.6 -> 0.5.6 * [new tag] 0.5.7 -> 0.5.7 * [new tag] 0.5.8 -> 0.5.8 * [new tag] 0.5.9 -> 0.5.9 * [new tag] 0.6 -> 0.6 * [new tag] 0.6.1 -> 0.6.1 * [new tag] 0.6.10 -> 0.6.10 * [new tag] 0.6.11 -> 0.6.11 * [new tag] 0.6.12 -> 0.6.12 * [new tag] 0.6.13 -> 0.6.13 * [new tag] 0.6.14 -> 0.6.14 * [new tag] 0.6.15 -> 0.6.15 * [new tag] 0.6.17 -> 0.6.17 * [new tag] 0.6.18 -> 0.6.18 * [new tag] 0.6.19 -> 0.6.19 * [new tag] 0.6.2 -> 0.6.2 * [new tag] 0.6.20 -> 0.6.20 * [new tag] 0.6.21 -> 0.6.21 * [new tag] 0.6.22 -> 0.6.22 * [new tag] 0.6.22.post1 -> 0.6.22.post1 * [new tag] 0.6.22rc1 -> 0.6.22rc1 * [new tag] 0.6.3 -> 0.6.3 * [new tag] 0.6.4 -> 0.6.4 * [new tag] 0.6.5 -> 0.6.5 * [new tag] 0.6.6 -> 0.6.6 * [new tag] 0.6.7 -> 0.6.7 * [new tag] 0.6.8 -> 0.6.8 * [new tag] 0.6.9 -> 0.6.9 * [new tag] 0.7 -> 0.7 * [new tag] 0.7.1 -> 0.7.1 * [new tag] 0.7.2 -> 0.7.2 * [new tag] 0.7.2a1 -> 0.7.2a1 * [new tag] 0.7.3 -> 0.7.3 * [new tag] 0.7.4 -> 0.7.4 * [new tag] 0.7.5 -> 0.7.5 * [new tag] 0.7.6 -> 0.7.6 * [new tag] 0.7.7 -> 0.7.7 * [new tag] 0.7.8 -> 0.7.8 * [new tag] 0.7rc1 -> 0.7rc1 * [new tag] 0.7rc2 -> 0.7rc2 * [new tag] 0.8.0 -> 0.8.0 * [new tag] 0.8.0.dev0 -> 0.8.0.dev0 * [new tag] 0.8.0rc1 -> 0.8.0rc1 * [new tag] 0.9.0.dev0 -> 0.9.0.dev0 * [new tag] 0.9.0rc1 -> 0.9.0rc1 [rtd-command-info] start-time: 2026-10-19T14:09:24.327315Z, end-time: 2026-10-19T14:09:24.391613Z, duration: 0, exit-code: 0 asdf global python 3.14.6 [rtd-command-info] start-time: 2026-10-19T14:09:24.897575Z, end-time: 2026-10-19T14:09:27.131825Z, duration: 2, exit-code: 0 asdf plugin add uv updating plugin repository...From https://github.com/asdf-vm/asdf-plugins c0369a1..3715919 master -> origin/master 8f55a19..035221f dependabot/github_actions/actions/checkout-6 -> origin/dependabot/github_actions/actions/checkout-6 26de994..a1633cc dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 -> origin/dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 * [new branch] tb/remove-deleted-plugins -> origin/tb/remove-deleted-plugins HEAD is now at 3715919 feat: add elp plugin (#1089) [rtd-command-info] start-time: 2026-10-19T14:09:27.207070Z, end-time: 2026-10-19T14:09:28.105877Z, duration: 0, exit-code: 0 asdf install uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.13.1 * Downloading uv release 0.13.1... uv 0.13.1 installation was successful! [rtd-command-info] start-time: 2026-10-19T14:09:28.195914Z, end-time: 2026-10-19T14:09:28.326938Z, duration: 0, exit-code: 0 asdf global uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.13.1 [rtd-command-info] start-time: 2026-10-19T14:09:28.469481Z, end-time: 2026-10-19T14:09:33.913256Z, duration: 5, exit-code: 0 ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true Downloading virtualenv (5.2MiB) Downloading uv (16.5MiB) Downloading pygments (1.2MiB) Downloading cryptography (4.5MiB) Downloaded pygments Downloaded cryptography Downloaded virtualenv Downloaded uv Installed 43 packages in 17ms Creating environment: docs Installing project in development mode Checking dependencies Syncing dependencies Loading template... Finding news fragments... Rendering news fragments... Writing to newsfile... Staging newsfile... Keeping the following files: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2577.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2671.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2628.chore.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2577.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2538.docs.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2703.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2708.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2652.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2577.chore.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2678.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2665.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2641.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2629.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/release-notes/2680.fix.md Done! [rtd-command-info] start-time: 2026-10-19T14:09:33.998154Z, end-time: 2026-10-19T14:09:46.027783Z, duration: 12, exit-code: 2 uvx --from=hatch!=1.18.0 hatch run docs:build -T Running Sphinx v9.1.0 loading translations [en]... done matplotlib is not installed, social cards will not be generated making output directory... done myst v5.1.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence', 'html_image', 'dollarmath'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, strikethrough_single_tilde=False, colon_fence_exact_match=False, suppress_warnings=[], highlight_code_blocks=True) myst-nb v1.4.0: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, eval_name_regex='^[a-zA-Z_][a-zA-Z0-9_]*$', execution_mode='off', execution_cache_path='', execution_excludepatterns=(), execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, scroll_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False) Using jupyter-cache at: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/_build/.jupyter_cache loading intersphinx inventory 'array_api' from https://array-api.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'awkward' from https://awkward-array.org/doc/stable/objects.inv ... loading intersphinx inventory 'cupy' from https://docs.cupy.dev/en/stable/objects.inv ... loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... loading intersphinx inventory 'fsspec' from https://filesystem-spec.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'h5py' from https://docs.h5py.org/en/latest/objects.inv ... loading intersphinx inventory 'hdf5plugin' from https://hdf5plugin.readthedocs.io/en/latest/objects.inv ... loading intersphinx inventory 'kvikio' from https://docs.rapids.ai/api/kvikio/stable/objects.inv ... loading intersphinx inventory 'loompy' from https://linnarssonlab.org/loompy/objects.inv ... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'obstore' from https://developmentseed.org/obstore/latest/objects.inv ... loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... loading intersphinx inventory 'scverse_misc' from https://scverse-misc.readthedocs.io/stable/objects.inv ... loading intersphinx inventory 'sklearn' from https://scikit-learn.org/stable/objects.inv ... loading intersphinx inventory 'xarray' from https://docs.xarray.dev/en/stable/objects.inv ... loading intersphinx inventory 'zarr' from https://zarr.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'zarrs' from https://zarrs-python.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'annbatch' from https://annbatch.readthedocs.io/en/stable/objects.inv ... intersphinx inventory has moved: https://docs.rapids.ai/api/kvikio/stable/objects.inv -> https://docs.nvidia.com/kvikio/latest/objects.inv loading intersphinx inventory 'mudata' from https://mudata.readthedocs.io/stable/objects.inv ... intersphinx inventory has moved: https://mudata.readthedocs.io/stable/objects.inv -> https://mudata.scverse.org/stable/objects.inv [autosummary] generating autosummary for: _key_contributors.rst, accessors.rst, api.md, contributing.md, fileformat-prose.md, generated/anndata.types.ExtensionNamespace.rst, index.md, interoperability.md, references.rst, release-notes/index.md, ..., tutorials/index.md, tutorials/notebooks/annbatch.ipynb, tutorials/notebooks/anncollection.ipynb, tutorials/notebooks/anndata_dask_array.ipynb, tutorials/notebooks/awkward-arrays.ipynb, tutorials/notebooks/getting-started.ipynb, tutorials/notebooks/read_lazy.ipynb, tutorials/notebooks/{read,write}_dispatched.ipynb, tutorials/zarr-v3.md, typing.md [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.unwriteable.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.write_csvs.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.write_h5ad.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.write_loom.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.write_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.ImplicitModificationWarning.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.abc.CSCDataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.abc.CSRDataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.acc.AdAcc.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.io.sparse_dataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.io.write_elem.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.io.write_h5ad.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.io.write_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.register_anndata_namespace.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.settings.override.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.settings.reset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.settings.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApi.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.T.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.chunk_X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.chunked_X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.copy.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.filename.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.is_view.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.isbacked.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.isview.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.AnnData.layers.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApi.shape.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApi.size.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.__array_namespace__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.__getitem__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.device.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.dtype.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.ndim.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.shape.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.size.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2708/docs/generated/anndata.types.SupportsArrayApiBase.to_device.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 21 source files that are out of date updating environment: [new config] 144 added, 0 changed, 0 removed reading sources... [ 1%] _key_contributors reading sources... [ 1%] accessors Extension error (scverse_doc.autodoc)! Versions ======== * Platform: linux; (Linux-7.0.0-1004-aws-x86_64-with-glibc2.43) * Python version: 3.14.6 (CPython) * Sphinx version: 9.1.0 * Docutils version: 0.22.4 * Jinja2 version: 3.1.6 * Pygments version: 2.21.0 Last Messages ============= building [html]: targets for 21 source files that are out of date updating environment: [new config] 144 added, 0 changed, 0 removed reading sources... [ 1%] _key_contributors reading sources... [ 1%] accessors Loaded Extensions ================= * sphinx.ext.mathjax (9.1.0) * alabaster (1.0.0) * sphinxcontrib.applehelp (2.0.0) * sphinxcontrib.devhelp (2.0.0) * sphinxcontrib.htmlhelp (2.1.0) * sphinxcontrib.serializinghtml (2.0.0) * sphinxcontrib.qthelp (2.0.0) * myst_nb (1.4.0) * sphinx_copybutton (0.5.2) * sphinx.ext.autodoc (9.1.0) * sphinx.ext.intersphinx (9.1.0) * sphinx.ext.doctest (9.1.0) * sphinx.ext.coverage (9.1.0) * sphinx.ext.napoleon (9.1.0) * sphinx.ext.autosummary (9.1.0) * sphinx_autodoc_typehints (3.17.2) * sphinx_issues (6.0.0) * sphinx_design (0.7.0) * sphinxext.opengraph (0.13.0) * scanpydoc.definition_list_typed_field (0.17.5) * scanpydoc.elegant_typehints (0.17.5) * scanpydoc.rtd_github_links (0.17.5) * scanpydoc.theme (unknown version) * scanpydoc.release_notes (0.17.5) * scanpydoc (0.17.5) * scverse_doc.autodoc (unknown version) * scverse_doc.napoleon (unknown version) * scverse_misc.sphinx_ext (0.1.7) * sphinx.ext.linkcode (9.1.0) * IPython.sphinxext.ipython_console_highlighting (unknown version) * merge_attr_docs (unknown version) * patch_myst_cite (unknown version) * skip_private_bases (unknown version) * no_skip_abc_members (unknown version) * sphinx_book_theme (unknown version) * pydata_sphinx_theme (unknown version) Traceback ========= Traceback (most recent call last): File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/events.py", line 441, in emit results.append(listener.handler(self._app, *args)) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/scverse_doc/autodoc/__init__.py", line 54, in _skip_private_bases bases[:] = [b for b in bases if b is not object and get_origin(b) is not Generic and not b.__name__.startswith("_")] ^^^^^^^^^^ AttributeError: 'str' object has no attribute '__name__'. Did you mean: '__ne__'? The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/cmd/build.py", line 432, in build_main app.build(args.force_all, args.filenames) ~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/application.py", line 442, in build self.builder.build_update() ~~~~~~~~~~~~~~~~~~~~~~~~~^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/builders/__init__.py", line 381, in build_update self.build( ~~~~~~~~~~^ to_build, ^^^^^^^^^ ...<2 lines>... method='update', ^^^^^^^^^^^^^^^^ ) ^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/builders/__init__.py", line 409, in build updated_docnames = set(self.read()) ~~~~~~~~~^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/builders/__init__.py", line 525, in read self._read_serial(docnames) ~~~~~~~~~~~~~~~~~^^^^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/builders/__init__.py", line 590, in _read_serial self.read_doc(docname) ~~~~~~~~~~~~~^^^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/builders/__init__.py", line 653, in read_doc doctree = _parse_str_to_doctree( content, ...<6 lines>... transforms=self._registry.get_transforms(), ) File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/util/docutils.py", line 902, in _parse_str_to_doctree parser.parse(content, document) ~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/parsers.py", line 99, in parse self.statemachine.run(inputlines, document, inliner=self.inliner) ~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/docutils/parsers/rst/states.py", line 182, in run results = StateMachineWS.run(self, input_lines, input_offset, input_source=document['source']) File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/docutils/statemachine.py", line 234, in run context, next_state, result = self.check_line( ~~~~~~~~~~~~~~~^ context, state, transitions) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/docutils/statemachine.py", line 446, in check_line return method(match, context, next_state) File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/docutils/parsers/rst/states.py", line 2487, in explicit_markup nodelist, blank_finish = self.explicit_construct(match) ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/docutils/parsers/rst/states.py", line 2499, in explicit_construct return method(self, expmatch) File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/docutils/parsers/rst/states.py", line 2236, in directive return self.run_directive( ~~~~~~~~~~~~~~~~~~^ directive_class, match, type_name, option_presets) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/docutils/parsers/rst/states.py", line 2286, in run_directive result = directive_instance.run() File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 218, in run items = self.get_items(names) File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 345, in get_items props = _load_object_by_name( name=full_name, ...<7 lines>... reread_always=reread_always, ) File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_loader.py", line 97, in _load_object_by_name props = _make_props_from_imported_object( im, ...<5 lines>... parts=parts, ) File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_loader.py", line 227, in _make_props_from_imported_object events.emit( ~~~~~~~~~~~^ 'autodoc-process-bases', ^^^^^^^^^^^^^^^^^^^^^^^^ ...<3 lines>... obj_bases, ^^^^^^^^^^ ) ^ File "/home/docs/.local/share/hatch/env/virtual/anndata/qBU-jZDX/docs/lib/python3.14/site-packages/sphinx/events.py", line 452, in emit raise ExtensionError( ...<3 lines>... ) from exc sphinx.errors.ExtensionError: Handler for event 'autodoc-process-bases' threw an exception (exception: 'str' object has no attribute '__name__') The full traceback has been saved in: /tmp/sphinx-err-27bp9bpq.log To report this error to the developers, please open an issue at . Thanks! Please also report this if it was a user error, so that a better error message can be provided next time.