Read the Docs build information
Build id: 457526
Project: quantify-quantify-scheduler
Version: latest
Commit: 9728ff439935b24a8ea39b95c5435b4e59aec7ab
Date: 2020-10-21T11:29:00.894943Z
State: finished
Success: True


[rtd-command-info] start-time: 2020-10-21T11:29:02.451519Z, end-time: 2020-10-21T11:29:05.587221Z, duration: 3, exit-code: 0
git clone --no-single-branch --depth 50 git@gitlab.com:quantify-os/quantify-scheduler.git .
Cloning into '.'...
Warning: Permanently added 'gitlab.com,172.65.251.78' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2020-10-21T11:29:05.991178Z, end-time: 2020-10-21T11:29:06.053939Z, duration: 0, exit-code: 0
git checkout --force origin/develop
Note: checking out 'origin/develop'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 9728ff4 Merge branch 'doc_help' into 'develop'

[rtd-command-info] start-time: 2020-10-21T11:29:06.342618Z, end-time: 2020-10-21T11:29:06.398163Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-10-21T11:29:07.858574Z, end-time: 2020-10-21T11:29:13.093563Z, duration: 5, exit-code: 0
python3.8 -mvirtualenv --system-site-packages 
Using base prefix '/home/docs/.pyenv/versions/3.8.6'
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Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-10-21T11:29:13.266682Z, end-time: 2020-10-21T11:29:14.003362Z, duration: 0, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
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[rtd-command-info] start-time: 2020-10-21T11:29:14.194911Z, end-time: 2020-10-21T11:29:40.828188Z, duration: 26, exit-code: 0
python -m pip install --upgrade --no-cache-dir -I setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
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Building wheels for collected packages: mock, pillow, future
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  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=9edad90928a1a9bc66f2905801cb9d2bc49f1e8b8413dad5d78bcb6f0a03bfdf
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  Stored in directory: /tmp/pip-ephem-wheel-cache-ndzj2p2x/wheels/8e/70/28/3d6ccd6e315f65f245da085482a2e1c7d14b90b30f239e2cf4
Successfully built mock pillow future
Installing collected packages: setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, pyparsing, six, packaging, sphinxcontrib-serializinghtml, sphinxcontrib-websupport, imagesize, snowballstemmer, pytz, babel, urllib3, chardet, certifi, idna, requests, Pygments, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
ERROR: After October 2020 you may experience errors when installing or updating packages. This is because pip will change the way that it resolves dependency conflicts.

We recommend you use --use-feature=2020-resolver to test your packages with the new resolver before it becomes the default.

matplotlib 3.3.2 requires pillow>=6.2.0, but you'll have pillow 5.4.1 which is incompatible.
Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.7.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.6.20 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.24.0 setuptools-50.3.2 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.25.11

[rtd-command-info] start-time: 2020-10-21T11:29:40.946354Z, end-time: 2020-10-21T11:30:04.300090Z, duration: 23, exit-code: 0
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Building wheels for collected packages: watchdog, sphinx-jsonschema, PyYAML, pathtools, pandocfilters, funcparserlib, pyrsistent, tornado
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Successfully built watchdog sphinx-jsonschema PyYAML pathtools pandocfilters funcparserlib pyrsistent tornado
Installing collected packages: bump2version, wheel, PyYAML, argh, pathtools, watchdog, pyflakes, pycodestyle, mccabe, flake8, coverage, ipython-genutils, traitlets, entrypoints, attrs, pyrsistent, jsonschema, jupyter-core, nbformat, mistune, defusedxml, jupyterlab-pygments, testpath, webencodings, bleach, pandocfilters, nest-asyncio, async-generator, pyzmq, tornado, jupyter-client, nbclient, nbconvert, nbsphinx, scipy, threadpoolctl, joblib, scikit-learn, pyaml, scikit-optimize, sphinx-rtd-theme, funcparserlib, webcolors, blockdiag, sphinxcontrib-blockdiag, ptyprocess, terminado, prometheus-client, pycparser, cffi, argon2-cffi, Send2Trash, pickleshare, backcall, pexpect, decorator, parso, jedi, wcwidth, prompt-toolkit, IPython, ipykernel, notebook, widgetsnbextension, ipywidgets, jupyter-sphinx, jsonpointer, sphinx-jsonschema, requests-toolbelt, tqdm, pkginfo, readme-renderer, twine, pluggy, iniconfig, toml, py, pytest, pytest-runner, pytest-cov, zipp, importlib-metadata, flake8-html
  Attempting uninstall: wheel
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  Attempting uninstall: sphinx-rtd-theme
    Found existing installation: sphinx-rtd-theme 0.4.3
    Uninstalling sphinx-rtd-theme-0.4.3:
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ERROR: After October 2020 you may experience errors when installing or updating packages. This is because pip will change the way that it resolves dependency conflicts.

We recommend you use --use-feature=2020-resolver to test your packages with the new resolver before it becomes the default.

sphinxcontrib-blockdiag 2.0.0 requires Sphinx>=2.0, but you'll have sphinx 1.8.5 which is incompatible.
Successfully installed IPython-7.18.1 PyYAML-5.3.1 Send2Trash-1.5.0 argh-0.26.2 argon2-cffi-20.1.0 async-generator-1.10 attrs-20.2.0 backcall-0.2.0 bleach-3.2.1 blockdiag-2.0.1 bump2version-0.5.11 cffi-1.14.3 coverage-5.3 decorator-4.4.2 defusedxml-0.6.0 entrypoints-0.3 flake8-3.8.4 flake8-html-0.4.1 funcparserlib-0.3.6 importlib-metadata-2.0.0 iniconfig-1.1.1 ipykernel-5.3.4 ipython-genutils-0.2.0 ipywidgets-7.5.1 jedi-0.17.2 joblib-0.17.0 jsonpointer-2.0 jsonschema-3.2.0 jupyter-client-6.1.7 jupyter-core-4.6.3 jupyter-sphinx-0.2.3 jupyterlab-pygments-0.1.2 mccabe-0.6.1 mistune-0.8.4 nbclient-0.5.1 nbconvert-6.0.7 nbformat-5.0.8 nbsphinx-0.8.0 nest-asyncio-1.4.1 notebook-6.1.4 pandocfilters-1.4.2 parso-0.7.1 pathtools-0.1.2 pexpect-4.8.0 pickleshare-0.7.5 pkginfo-1.6.0 pluggy-0.13.1 prometheus-client-0.8.0 prompt-toolkit-3.0.8 ptyprocess-0.6.0 py-1.9.0 pyaml-20.4.0 pycodestyle-2.6.0 pycparser-2.20 pyflakes-2.2.0 pyrsistent-0.17.3 pytest-6.1.1 pytest-cov-2.10.1 pytest-runner-5.2 pyzmq-19.0.2 readme-renderer-28.0 requests-toolbelt-0.9.1 scikit-learn-0.23.1 scikit-optimize-0.8.1 scipy-1.5.3 sphinx-jsonschema-1.16.5 sphinx-rtd-theme-0.5.0rc2 sphinxcontrib-blockdiag-2.0.0 terminado-0.9.1 testpath-0.4.4 threadpoolctl-2.1.0 toml-0.10.1 tornado-6.0.4 tqdm-4.50.2 traitlets-5.0.5 twine-1.14.0 watchdog-0.9.0 wcwidth-0.2.5 webcolors-1.11.1 webencodings-0.5.1 wheel-0.33.6 widgetsnbextension-3.5.1 zipp-3.3.1

[rtd-command-info] start-time: 2020-10-21T11:30:04.580149Z, end-time: 2020-10-21T11:30:35.016845Z, duration: 30, exit-code: 0
python -m pip install --upgrade --upgrade-strategy eager --no-cache-dir .
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Building wheels for collected packages: quantify-scheduler, retrying, lmfit, asteval, pyvisa, requirements-parser, wrapt, psutil
  Building wheel for quantify-scheduler (setup.py): started
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  Created wheel for quantify-scheduler: filename=quantify_scheduler-0.1.0-py2.py3-none-any.whl size=3959 sha256=88c89a538e3bd3a1deb3151a51eae76b30d43a89b6c7849091a027fa9a87f219
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Successfully built quantify-scheduler retrying lmfit asteval pyvisa requirements-parser wrapt psutil
Installing collected packages: toolz, columnar, retrying, plotly, xarray, atomicwrites, sortedcontainers, sortedcollections, adaptive, asteval, uncertainties, lmfit, xxhash, pyqtgraph, PyQt5-sip, pyqt5, contextlib2, schema, broadbean, pyvisa, opencensus-context, protobuf, googleapis-common-protos, pyasn1, rsa, cachetools, pyasn1-modules, google-auth, google-api-core, opencensus, h5py, requirements-parser, tabulate, psutil, opencensus-ext-azure, typing-extensions, websockets, wrapt, ruamel.yaml.clib, ruamel.yaml, qcodes, quantify-core, quantify-scheduler, pillow
  Attempting uninstall: pillow
    Found existing installation: Pillow 5.4.1
    Uninstalling Pillow-5.4.1:
      Successfully uninstalled Pillow-5.4.1
Successfully installed PyQt5-sip-12.8.1 adaptive-0.11.1 asteval-0.9.19 atomicwrites-1.4.0 broadbean-0.9.1 cachetools-4.1.1 columnar-1.3.1 contextlib2-0.6.0.post1 google-api-core-1.23.0 google-auth-1.22.1 googleapis-common-protos-1.52.0 h5py-2.10.0 lmfit-1.0.1 opencensus-0.7.11 opencensus-context-0.1.2 opencensus-ext-azure-1.0.5 pillow-8.0.0 plotly-4.11.0 protobuf-3.13.0 psutil-5.7.2 pyasn1-0.4.8 pyasn1-modules-0.2.8 pyqt5-5.14.0 pyqtgraph-0.11.0 pyvisa-1.10.1 qcodes-0.18.0 quantify-core-0.2.0 quantify-scheduler-0.1.0 requirements-parser-0.2.0 retrying-1.3.3 rsa-4.6 ruamel.yaml-0.16.12 ruamel.yaml.clib-0.2.2 schema-0.7.2 sortedcollections-1.2.1 sortedcontainers-2.2.2 tabulate-0.8.7 toolz-0.11.1 typing-extensions-3.7.4.3 uncertainties-3.1.4 websockets-8.1 wrapt-1.12.1 xarray-0.16.1 xxhash-2.0.0

[rtd-command-info] start-time: 2020-10-21T11:30:37.804802Z, end-time: 2020-10-21T11:30:37.881829Z, duration: 0, exit-code: 0
cat docs/conf.py
#!/usr/bin/env python
#
# quantify documentation build configuration file, created by
# sphinx-quickstart on Fri Jun  9 13:47:02 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another
# directory, add these directories to sys.path here. If the directory is
# relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here.
#
import os
import sys

package_path = os.path.abspath('..')
sys.path.insert(0, package_path)

# -- General configuration ---------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = ['sphinx.ext.autodoc',  # auto document docstrings
              'sphinx.ext.napoleon',  # autodoc understands numpy docstrings
              'sphinx.ext.viewcode',
              'sphinx.ext.intersphinx',
              'sphinx.ext.autosectionlabel',
              'sphinx-jsonschema',
              'sphinx_rtd_theme',
              'sphinx.ext.mathjax',
              'nbsphinx',
              'sphinx-jsonschema',
              'jupyter_sphinx',
              'sphinxcontrib.blockdiag',
              ]

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

intersphinx_mapping = {'python': ('https://docs.python.org/3', None),
                       'qcodes': ('https://qcodes.github.io/Qcodes/', None),
                       'xarray': ('https://xarray.pydata.org/en/stable/', None),
                       'numpy': ('https://numpy.org/doc/stable/', None), }


# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = 'Quantify-Scheduler'
copyright = "2020, Qblox & Orange Quantum Systems"
author = "The Quantify consortium"


# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False


# -- Options for HTML output -------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a
# theme further.  For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
html_css_files = ['quantify.css', ]


# -- Options for HTMLHelp output ---------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = 'quantifydoc'


# -- Options for LaTeX output ------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',

    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',

    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',

    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass
# [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'quantify.tex',
     'quantify Documentation',
     'Quantify Consortium ', 'manual'),
]


# -- Options for manual page output ------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'quantify',
     'quantify Documentation',
     [author], 1)
]


# -- Options for Texinfo output ----------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'Quantify-scheduler',
     'Quantify-scheduler Documentation',
     author,
     'Quantify-scheduler',
     'One line description of project.',
     'Miscellaneous'),
]


blockdiag_html_image_format = 'SVG'




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("develop", "/en/develop/"),
    ],
    'downloads': [ 
    ("pdf", "//quantify-quantify-scheduler.readthedocs-hosted.com/_/downloads/en/latest/pdf/"),
    ("html", "//quantify-quantify-scheduler.readthedocs-hosted.com/_/downloads/en/latest/htmlzip/"),
    ("epub", "//quantify-quantify-scheduler.readthedocs-hosted.com/_/downloads/en/latest/epub/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'quantify-quantify-scheduler',
    'name': u'quantify-scheduler',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://quantify-quantify-scheduler.readthedocs-hosted.com/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/docs/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'None',
    'proxied_api_host': '/_',
    'github_repo': 'None',
    'github_version': 'develop',
    'display_github': False,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'develop',
    'display_bitbucket': False,
    'gitlab_user': 'quantify-os',
    'gitlab_repo': 'quantify-scheduler',
    'gitlab_version': 'develop',
    'display_gitlab': True,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '9728ff43',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2020-10-21T11:30:38.276946Z, end-time: 2020-10-21T11:31:29.361961Z, duration: 51, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.8.5
loading translations [en]... done
WARNING: extension 'jupyter_sphinx' has no setup() function; is it really a Sphinx extension module?
making output directory...
loading intersphinx inventory from https://docs.python.org/3/objects.inv...
loading intersphinx inventory from https://qcodes.github.io/Qcodes/objects.inv...
loading intersphinx inventory from https://xarray.pydata.org/en/stable/objects.inv...
loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv...
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 10 source files that are out of date
updating environment: 10 added, 0 changed, 0 removed
reading sources... [ 10%] api_reference
Matplotlib is building the font cache; this may take a moment.
reading sources... [ 20%] authors
reading sources... [ 30%] changelog
reading sources... [ 40%] concepts
reading sources... [ 50%] contributing
reading sources... [ 60%] index
reading sources... [ 70%] installation
reading sources... [ 80%] readme
reading sources... [ 90%] sequencer
reading sources... [100%] toolchain

/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/types.py:docstring of quantify.scheduler.Operation:16: WARNING: "jsonschema" directive may not both specify an external file and have content.

.. jsonschema:: schemas/operation.json


    .. warning::

        The instruction/logical information level is not clearly defined yet.
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/types.py:docstring of quantify.scheduler.types.Operation:16: WARNING: "jsonschema" directive may not both specify an external file and have content.

.. jsonschema:: schemas/operation.json


    .. warning::

        The instruction/logical information level is not clearly defined yet.
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/waveforms.py:docstring of quantify.scheduler.waveforms.drag:47: WARNING: Duplicate substitution definition name: "citation1".
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/waveforms.py:docstring of quantify.scheduler.waveforms.drag:55: WARNING: Duplicate substitution definition name: "citation2".
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/concepts.rst:27: WARNING: duplicate label compilation, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/api_reference.rst
../README.rst:67: WARNING: Document may not end with a transition.
../README.rst:3: WARNING: duplicate label quantify-scheduler, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/index.rst
../README.rst:43: WARNING: duplicate label about, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/index.rst
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:122: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler import Schedule
  sched = Schedule('Bell experiment')
  sched
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:130: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  sched.data
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:136: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  # define the resources
  # q0, q1 = Qubits(n=2) # assumes all to all connectivity
  q0, q1 = ('q0', 'q1') # we use strings because Resources have not been implemented yet
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:145: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from quantify.scheduler.gate_library import Reset, Measure, CZ, Rxy, X90

    # Define the operations, these will be added to the circuit
    init_all = Reset(q0, q1)
    x90_q0 = Rxy(theta=90, phi=0, qubit=q0)
    cz = CZ(qC=q0, qT=q1)
    Rxy_theta = Rxy(theta=23, phi=0, qubit=q0) # will be not be used in the experiment loop.
    meass_all = Measure(q0, q1)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:158: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # Rxy_theta  # produces the same output
    Rxy_theta.data
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:165: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np

    # we use a regular for loop as we have to unroll the changing theta variable here
    for theta in np.linspace(0, 360, 21):
        sched.add(init_all)
        sched.add(x90_q0)
        sched.add(operation=cz)
        sched.add(Rxy(theta=theta, phi=0, qubit=q0))
        sched.add(Measure(q0, q1), label='M {:.2f} deg'.format(theta))
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:179: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    sched
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:185: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    sched.data.keys()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:192: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from itertools import islice
    # showing the first 5 elements of the operation dict
    dict(islice(sched.data['operation_dict'].items(), 5))
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:200: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  sched.data['timing_constraints'][:6]
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:211: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.compilation import _determine_absolute_timing
  # We modify the schedule in place adding timing information
  # setting clock_unit='ideal' ignores the duration of operations and sets it to 1.
  _determine_absolute_timing(sched, clock_unit='ideal')
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:220: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  %matplotlib inline

  from quantify.scheduler.backends import visualization as viz
  f, ax = viz.circuit_diagram_matplotlib(sched)
  # all gates are plotted, but it doesn't all fit in a matplotlib figure
  ax.set_xlim(-.5, 9.5)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:235: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    #  q0 ro_pulse_modulation_freq should be 80e6, requires issue38 resolution
    device_test_cfg = {
          "qubits":
          {
              "q0": {"mw_amp180": 0.5, "mw_motzoi": -0.25, "mw_duration": 20e-9,
                     "mw_modulation_freq": 50e6, "mw_ef_amp180": 0.87, "mw_ch": "qcm0.s0",
                     "ro_ch": "qrm0.s0", "ro_pulse_amp": 0.5, "ro_pulse_modulation_freq": 80e6,
                     "ro_pulse_type": "square", "ro_pulse_duration": 150e-9,
                     "ro_acq_delay": 120e-9, "ro_acq_integration_time": 700e-9,
                     "ro_acq_weigth_type": "SSB",
                     "init_duration": 250e-6
                     },
              "q1": {"mw_amp180": 0.45, "mw_motzoi": -0.15, "mw_duration": 20e-9,
                     "mw_modulation_freq": 80e6, "mw_ef_amp180": 0.27, "mw_ch": "qcm1.s0",
                     "ro_ch": "qrm0.s1", "ro_pulse_amp": 0.5, "ro_pulse_modulation_freq": -23e6,
                     "ro_pulse_type": "square", "ro_pulse_duration": 100e-9,
                     "ro_acq_delay": 120e-9, "ro_acq_integration_time": 700e-9,
                     "ro_acq_weigth_type": "SSB",
                     "init_duration": 250e-6 }
          },
          "edges":
          {
              "q0-q1": {
                  "flux_duration": 40e-9,
                  "flux_ch_control": "qcm0.s1", "flux_ch_target": "qcm1.s1",
                  "flux_amp_control": 0.5,  "flux_amp_target": 0,
                  "phase_correction_control": 0,
                  "phase_correction_target": 0}
          }
      }
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:278: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from quantify.scheduler.resources import CompositeResource, Pulsar_QCM_sequencer, Pulsar_QRM_sequencer
    qcm0 = CompositeResource('qcm0', ['qcm0.s0', 'qcm0.s1'])
    qcm0_s0 = Pulsar_QCM_sequencer('qcm0.s0', instrument_name='qcm0', seq_idx=0)
    qcm0_s1 = Pulsar_QCM_sequencer('qcm0.s1', instrument_name='qcm0', seq_idx=1)

    qcm1 = CompositeResource('qcm1', ['qcm1.s0', 'qcm1.s1'])
    qcm1_s0 = Pulsar_QCM_sequencer('qcm1.s0', instrument_name='qcm1', seq_idx=0)
    qcm1_s1 = Pulsar_QCM_sequencer('qcm1.s1', instrument_name='qcm1', seq_idx=1)

    qrm0 = CompositeResource('qrm0', ['qrm0.s0', 'qrm0.s1'])
    # Currently mocking a readout module using an acquisition module
    qrm0_s0 = Pulsar_QRM_sequencer('qrm0.s0', instrument_name='qrm0', seq_idx=0)
    qrm0_s1 = Pulsar_QRM_sequencer('qrm0.s1', instrument_name='qrm0', seq_idx=1)

    sched.add_resources([qcm0, qcm0_s0, qcm0_s1, qcm1, qcm1_s0, qcm1_s1, qrm0, qrm0_s0, qrm0_s1])
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:298: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.compilation import qcompile
  import quantify.scheduler.backends.pulsar_backend as pb
  sched, config_dict = qcompile(sched, device_test_cfg, backend=pb.pulsar_assembler_backend)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:306: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    config_dict
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:312: WARNING: Title level inconsistent:

Visualization using a pulse diagram
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:317: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.backends.visualization import pulse_diagram_plotly
  fig = pulse_diagram_plotly(sched, ch_list=['qcm0.s0', 'qcm1.s0', 'qrm0.s0', 'qrm0.r0'])
  fig.show()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:331: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # todo install from pypi when released
    try:
        from pulsar_qcm.pulsar_qcm import pulsar_qcm_dummy
        from pulsar_qrm.pulsar_qrm import pulsar_qrm_dummy
        PULSAR_ASSEMBLER = True
    except ImportError:
        PULSAR_ASSEMBLER = False
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:343: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        _pulsars = []
        # first we need to create some Instruments representing the other devices in our configuration
        for qcm_name in ['qcm0', 'qcm1']:
            _pulsars.append(pulsar_qcm_dummy(qcm_name))
        for qrm_name in ['qrm0', 'qrm1']:
            _pulsars.append(pulsar_qrm_dummy(qrm_name))
        pb.configure_pulsar_sequencers(config_dict)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:357: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        qcm0 = _pulsars[0]
        qrm0 = _pulsars[2]

        qcm0.arm_sequencer()
        qrm0.arm_sequencer()
        qcm0.start_sequencer()
        qrm0.start_sequencer()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:374: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        seq_idx = 0
        qrm0.stop_sequencer()
        qrm0.store_acquisition(seq_idx, "meas_0", 4800)
        acq = qrm0.get_acquisitions(seq_idx)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:272: WARNING: duplicate label resources, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/api_reference.rst
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [ 10%] api_reference
writing output... [ 20%] authors
writing output... [ 30%] changelog
writing output... [ 40%] concepts
writing output... [ 50%] contributing
writing output... [ 60%] index
writing output... [ 70%] installation
writing output... [ 80%] readme
writing output... [ 90%] sequencer
writing output... [100%] toolchain

generating indices... genindex py-modindex
highlighting module code... [ 12%] quantify.scheduler.backends.pulsar_backend
highlighting module code... [ 25%] quantify.scheduler.backends.visualization
highlighting module code... [ 37%] quantify.scheduler.compilation
highlighting module code... [ 50%] quantify.scheduler.gate_library
highlighting module code... [ 62%] quantify.scheduler.pulse_library
highlighting module code... [ 75%] quantify.scheduler.resources
highlighting module code... [ 87%] quantify.scheduler.types
highlighting module code... [100%] quantify.scheduler.waveforms

writing additional pages... search
copying images... [100%] images/bell_circuit_QI.png

copying static files... done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 32 warnings.

The HTML pages are in _build/html.

[rtd-command-info] start-time: 2020-10-21T11:31:29.737425Z, end-time: 2020-10-21T11:31:34.965599Z, duration: 5, exit-code: 0
python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia
Running Sphinx v1.8.5
loading translations [en]... done
WARNING: extension 'jupyter_sphinx' has no setup() function; is it really a Sphinx extension module?
making output directory...
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/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/types.py:docstring of quantify.scheduler.Operation:16: WARNING: "jsonschema" directive may not both specify an external file and have content.

.. jsonschema:: schemas/operation.json


    .. warning::

        The instruction/logical information level is not clearly defined yet.
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/types.py:docstring of quantify.scheduler.types.Operation:16: WARNING: "jsonschema" directive may not both specify an external file and have content.

.. jsonschema:: schemas/operation.json


    .. warning::

        The instruction/logical information level is not clearly defined yet.
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/waveforms.py:docstring of quantify.scheduler.waveforms.drag:47: WARNING: Duplicate substitution definition name: "citation1".
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/waveforms.py:docstring of quantify.scheduler.waveforms.drag:55: WARNING: Duplicate substitution definition name: "citation2".
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/concepts.rst:27: WARNING: duplicate label compilation, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/api_reference.rst
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/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:122: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler import Schedule
  sched = Schedule('Bell experiment')
  sched
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:130: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  sched.data
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:136: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  # define the resources
  # q0, q1 = Qubits(n=2) # assumes all to all connectivity
  q0, q1 = ('q0', 'q1') # we use strings because Resources have not been implemented yet
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:145: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from quantify.scheduler.gate_library import Reset, Measure, CZ, Rxy, X90

    # Define the operations, these will be added to the circuit
    init_all = Reset(q0, q1)
    x90_q0 = Rxy(theta=90, phi=0, qubit=q0)
    cz = CZ(qC=q0, qT=q1)
    Rxy_theta = Rxy(theta=23, phi=0, qubit=q0) # will be not be used in the experiment loop.
    meass_all = Measure(q0, q1)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:158: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # Rxy_theta  # produces the same output
    Rxy_theta.data
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:165: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np

    # we use a regular for loop as we have to unroll the changing theta variable here
    for theta in np.linspace(0, 360, 21):
        sched.add(init_all)
        sched.add(x90_q0)
        sched.add(operation=cz)
        sched.add(Rxy(theta=theta, phi=0, qubit=q0))
        sched.add(Measure(q0, q1), label='M {:.2f} deg'.format(theta))
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:179: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    sched
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:185: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    sched.data.keys()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:192: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from itertools import islice
    # showing the first 5 elements of the operation dict
    dict(islice(sched.data['operation_dict'].items(), 5))
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:200: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  sched.data['timing_constraints'][:6]
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:211: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.compilation import _determine_absolute_timing
  # We modify the schedule in place adding timing information
  # setting clock_unit='ideal' ignores the duration of operations and sets it to 1.
  _determine_absolute_timing(sched, clock_unit='ideal')
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:220: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  %matplotlib inline

  from quantify.scheduler.backends import visualization as viz
  f, ax = viz.circuit_diagram_matplotlib(sched)
  # all gates are plotted, but it doesn't all fit in a matplotlib figure
  ax.set_xlim(-.5, 9.5)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:235: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    #  q0 ro_pulse_modulation_freq should be 80e6, requires issue38 resolution
    device_test_cfg = {
          "qubits":
          {
              "q0": {"mw_amp180": 0.5, "mw_motzoi": -0.25, "mw_duration": 20e-9,
                     "mw_modulation_freq": 50e6, "mw_ef_amp180": 0.87, "mw_ch": "qcm0.s0",
                     "ro_ch": "qrm0.s0", "ro_pulse_amp": 0.5, "ro_pulse_modulation_freq": 80e6,
                     "ro_pulse_type": "square", "ro_pulse_duration": 150e-9,
                     "ro_acq_delay": 120e-9, "ro_acq_integration_time": 700e-9,
                     "ro_acq_weigth_type": "SSB",
                     "init_duration": 250e-6
                     },
              "q1": {"mw_amp180": 0.45, "mw_motzoi": -0.15, "mw_duration": 20e-9,
                     "mw_modulation_freq": 80e6, "mw_ef_amp180": 0.27, "mw_ch": "qcm1.s0",
                     "ro_ch": "qrm0.s1", "ro_pulse_amp": 0.5, "ro_pulse_modulation_freq": -23e6,
                     "ro_pulse_type": "square", "ro_pulse_duration": 100e-9,
                     "ro_acq_delay": 120e-9, "ro_acq_integration_time": 700e-9,
                     "ro_acq_weigth_type": "SSB",
                     "init_duration": 250e-6 }
          },
          "edges":
          {
              "q0-q1": {
                  "flux_duration": 40e-9,
                  "flux_ch_control": "qcm0.s1", "flux_ch_target": "qcm1.s1",
                  "flux_amp_control": 0.5,  "flux_amp_target": 0,
                  "phase_correction_control": 0,
                  "phase_correction_target": 0}
          }
      }
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:278: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from quantify.scheduler.resources import CompositeResource, Pulsar_QCM_sequencer, Pulsar_QRM_sequencer
    qcm0 = CompositeResource('qcm0', ['qcm0.s0', 'qcm0.s1'])
    qcm0_s0 = Pulsar_QCM_sequencer('qcm0.s0', instrument_name='qcm0', seq_idx=0)
    qcm0_s1 = Pulsar_QCM_sequencer('qcm0.s1', instrument_name='qcm0', seq_idx=1)

    qcm1 = CompositeResource('qcm1', ['qcm1.s0', 'qcm1.s1'])
    qcm1_s0 = Pulsar_QCM_sequencer('qcm1.s0', instrument_name='qcm1', seq_idx=0)
    qcm1_s1 = Pulsar_QCM_sequencer('qcm1.s1', instrument_name='qcm1', seq_idx=1)

    qrm0 = CompositeResource('qrm0', ['qrm0.s0', 'qrm0.s1'])
    # Currently mocking a readout module using an acquisition module
    qrm0_s0 = Pulsar_QRM_sequencer('qrm0.s0', instrument_name='qrm0', seq_idx=0)
    qrm0_s1 = Pulsar_QRM_sequencer('qrm0.s1', instrument_name='qrm0', seq_idx=1)

    sched.add_resources([qcm0, qcm0_s0, qcm0_s1, qcm1, qcm1_s0, qcm1_s1, qrm0, qrm0_s0, qrm0_s1])
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:298: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.compilation import qcompile
  import quantify.scheduler.backends.pulsar_backend as pb
  sched, config_dict = qcompile(sched, device_test_cfg, backend=pb.pulsar_assembler_backend)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:306: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    config_dict
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:312: WARNING: Title level inconsistent:

Visualization using a pulse diagram
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:317: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.backends.visualization import pulse_diagram_plotly
  fig = pulse_diagram_plotly(sched, ch_list=['qcm0.s0', 'qcm1.s0', 'qrm0.s0', 'qrm0.r0'])
  fig.show()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:331: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # todo install from pypi when released
    try:
        from pulsar_qcm.pulsar_qcm import pulsar_qcm_dummy
        from pulsar_qrm.pulsar_qrm import pulsar_qrm_dummy
        PULSAR_ASSEMBLER = True
    except ImportError:
        PULSAR_ASSEMBLER = False
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:343: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        _pulsars = []
        # first we need to create some Instruments representing the other devices in our configuration
        for qcm_name in ['qcm0', 'qcm1']:
            _pulsars.append(pulsar_qcm_dummy(qcm_name))
        for qrm_name in ['qrm0', 'qrm1']:
            _pulsars.append(pulsar_qrm_dummy(qrm_name))
        pb.configure_pulsar_sequencers(config_dict)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:357: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        qcm0 = _pulsars[0]
        qrm0 = _pulsars[2]

        qcm0.arm_sequencer()
        qrm0.arm_sequencer()
        qcm0.start_sequencer()
        qrm0.start_sequencer()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:374: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        seq_idx = 0
        qrm0.stop_sequencer()
        qrm0.store_acquisition(seq_idx, "meas_0", 4800)
        acq = qrm0.get_acquisitions(seq_idx)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:272: WARNING: duplicate label resources, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/api_reference.rst
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[rtd-command-info] start-time: 2020-10-21T11:31:35.294557Z, end-time: 2020-10-21T11:31:43.084090Z, duration: 7, exit-code: 0
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/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/types.py:docstring of quantify.scheduler.Operation:16: WARNING: "jsonschema" directive may not both specify an external file and have content.

.. jsonschema:: schemas/operation.json


    .. warning::

        The instruction/logical information level is not clearly defined yet.
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/types.py:docstring of quantify.scheduler.types.Operation:16: WARNING: "jsonschema" directive may not both specify an external file and have content.

.. jsonschema:: schemas/operation.json


    .. warning::

        The instruction/logical information level is not clearly defined yet.
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/waveforms.py:docstring of quantify.scheduler.waveforms.drag:47: WARNING: Duplicate substitution definition name: "citation1".
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/waveforms.py:docstring of quantify.scheduler.waveforms.drag:55: WARNING: Duplicate substitution definition name: "citation2".
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/concepts.rst:27: WARNING: duplicate label compilation, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/api_reference.rst
../README.rst:67: WARNING: Document may not end with a transition.
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../README.rst:43: WARNING: duplicate label about, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/index.rst
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:122: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler import Schedule
  sched = Schedule('Bell experiment')
  sched
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:130: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  sched.data
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:136: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  # define the resources
  # q0, q1 = Qubits(n=2) # assumes all to all connectivity
  q0, q1 = ('q0', 'q1') # we use strings because Resources have not been implemented yet
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:145: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from quantify.scheduler.gate_library import Reset, Measure, CZ, Rxy, X90

    # Define the operations, these will be added to the circuit
    init_all = Reset(q0, q1)
    x90_q0 = Rxy(theta=90, phi=0, qubit=q0)
    cz = CZ(qC=q0, qT=q1)
    Rxy_theta = Rxy(theta=23, phi=0, qubit=q0) # will be not be used in the experiment loop.
    meass_all = Measure(q0, q1)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:158: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # Rxy_theta  # produces the same output
    Rxy_theta.data
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:165: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np

    # we use a regular for loop as we have to unroll the changing theta variable here
    for theta in np.linspace(0, 360, 21):
        sched.add(init_all)
        sched.add(x90_q0)
        sched.add(operation=cz)
        sched.add(Rxy(theta=theta, phi=0, qubit=q0))
        sched.add(Measure(q0, q1), label='M {:.2f} deg'.format(theta))
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:179: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    sched
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:185: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    sched.data.keys()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:192: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from itertools import islice
    # showing the first 5 elements of the operation dict
    dict(islice(sched.data['operation_dict'].items(), 5))
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:200: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  sched.data['timing_constraints'][:6]
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:211: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.compilation import _determine_absolute_timing
  # We modify the schedule in place adding timing information
  # setting clock_unit='ideal' ignores the duration of operations and sets it to 1.
  _determine_absolute_timing(sched, clock_unit='ideal')
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:220: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  %matplotlib inline

  from quantify.scheduler.backends import visualization as viz
  f, ax = viz.circuit_diagram_matplotlib(sched)
  # all gates are plotted, but it doesn't all fit in a matplotlib figure
  ax.set_xlim(-.5, 9.5)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:235: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    #  q0 ro_pulse_modulation_freq should be 80e6, requires issue38 resolution
    device_test_cfg = {
          "qubits":
          {
              "q0": {"mw_amp180": 0.5, "mw_motzoi": -0.25, "mw_duration": 20e-9,
                     "mw_modulation_freq": 50e6, "mw_ef_amp180": 0.87, "mw_ch": "qcm0.s0",
                     "ro_ch": "qrm0.s0", "ro_pulse_amp": 0.5, "ro_pulse_modulation_freq": 80e6,
                     "ro_pulse_type": "square", "ro_pulse_duration": 150e-9,
                     "ro_acq_delay": 120e-9, "ro_acq_integration_time": 700e-9,
                     "ro_acq_weigth_type": "SSB",
                     "init_duration": 250e-6
                     },
              "q1": {"mw_amp180": 0.45, "mw_motzoi": -0.15, "mw_duration": 20e-9,
                     "mw_modulation_freq": 80e6, "mw_ef_amp180": 0.27, "mw_ch": "qcm1.s0",
                     "ro_ch": "qrm0.s1", "ro_pulse_amp": 0.5, "ro_pulse_modulation_freq": -23e6,
                     "ro_pulse_type": "square", "ro_pulse_duration": 100e-9,
                     "ro_acq_delay": 120e-9, "ro_acq_integration_time": 700e-9,
                     "ro_acq_weigth_type": "SSB",
                     "init_duration": 250e-6 }
          },
          "edges":
          {
              "q0-q1": {
                  "flux_duration": 40e-9,
                  "flux_ch_control": "qcm0.s1", "flux_ch_target": "qcm1.s1",
                  "flux_amp_control": 0.5,  "flux_amp_target": 0,
                  "phase_correction_control": 0,
                  "phase_correction_target": 0}
          }
      }
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:278: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from quantify.scheduler.resources import CompositeResource, Pulsar_QCM_sequencer, Pulsar_QRM_sequencer
    qcm0 = CompositeResource('qcm0', ['qcm0.s0', 'qcm0.s1'])
    qcm0_s0 = Pulsar_QCM_sequencer('qcm0.s0', instrument_name='qcm0', seq_idx=0)
    qcm0_s1 = Pulsar_QCM_sequencer('qcm0.s1', instrument_name='qcm0', seq_idx=1)

    qcm1 = CompositeResource('qcm1', ['qcm1.s0', 'qcm1.s1'])
    qcm1_s0 = Pulsar_QCM_sequencer('qcm1.s0', instrument_name='qcm1', seq_idx=0)
    qcm1_s1 = Pulsar_QCM_sequencer('qcm1.s1', instrument_name='qcm1', seq_idx=1)

    qrm0 = CompositeResource('qrm0', ['qrm0.s0', 'qrm0.s1'])
    # Currently mocking a readout module using an acquisition module
    qrm0_s0 = Pulsar_QRM_sequencer('qrm0.s0', instrument_name='qrm0', seq_idx=0)
    qrm0_s1 = Pulsar_QRM_sequencer('qrm0.s1', instrument_name='qrm0', seq_idx=1)

    sched.add_resources([qcm0, qcm0_s0, qcm0_s1, qcm1, qcm1_s0, qcm1_s1, qrm0, qrm0_s0, qrm0_s1])
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:298: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.compilation import qcompile
  import quantify.scheduler.backends.pulsar_backend as pb
  sched, config_dict = qcompile(sched, device_test_cfg, backend=pb.pulsar_assembler_backend)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:306: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    config_dict
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:312: WARNING: Title level inconsistent:

Visualization using a pulse diagram
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:317: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.backends.visualization import pulse_diagram_plotly
  fig = pulse_diagram_plotly(sched, ch_list=['qcm0.s0', 'qcm1.s0', 'qrm0.s0', 'qrm0.r0'])
  fig.show()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:331: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # todo install from pypi when released
    try:
        from pulsar_qcm.pulsar_qcm import pulsar_qcm_dummy
        from pulsar_qrm.pulsar_qrm import pulsar_qrm_dummy
        PULSAR_ASSEMBLER = True
    except ImportError:
        PULSAR_ASSEMBLER = False
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:343: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        _pulsars = []
        # first we need to create some Instruments representing the other devices in our configuration
        for qcm_name in ['qcm0', 'qcm1']:
            _pulsars.append(pulsar_qcm_dummy(qcm_name))
        for qrm_name in ['qrm0', 'qrm1']:
            _pulsars.append(pulsar_qrm_dummy(qrm_name))
        pb.configure_pulsar_sequencers(config_dict)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:357: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        qcm0 = _pulsars[0]
        qrm0 = _pulsars[2]

        qcm0.arm_sequencer()
        qrm0.arm_sequencer()
        qcm0.start_sequencer()
        qrm0.start_sequencer()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:374: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        seq_idx = 0
        qrm0.stop_sequencer()
        qrm0.store_acquisition(seq_idx, "meas_0", 4800)
        acq = qrm0.get_acquisitions(seq_idx)
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$makeindex = 'makeindex -s python.ist %O -o %D %S';
add_cus_dep( "glo", "gls", 0, "makeglo" );
sub makeglo {
 return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" );
}

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Chapter 1.

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Chapter 2.

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Chapter 3.

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Chapter 1.

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Chapter 1.

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Chapter 2.
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Chapter 3.
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Latexmk: Errors, in force_mode: so I tried finishing targets

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[rtd-command-info] start-time: 2020-10-21T11:31:46.328694Z, end-time: 2020-10-21T11:31:58.091789Z, duration: 11, exit-code: 0
python sphinx-build -T -b epub -d _build/doctrees-epub -D language=en . _build/epub
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/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/types.py:docstring of quantify.scheduler.Operation:16: WARNING: "jsonschema" directive may not both specify an external file and have content.

.. jsonschema:: schemas/operation.json


    .. warning::

        The instruction/logical information level is not clearly defined yet.
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/types.py:docstring of quantify.scheduler.types.Operation:16: WARNING: "jsonschema" directive may not both specify an external file and have content.

.. jsonschema:: schemas/operation.json


    .. warning::

        The instruction/logical information level is not clearly defined yet.
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/waveforms.py:docstring of quantify.scheduler.waveforms.drag:47: WARNING: Duplicate substitution definition name: "citation1".
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/quantify/scheduler/waveforms.py:docstring of quantify.scheduler.waveforms.drag:55: WARNING: Duplicate substitution definition name: "citation2".
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/concepts.rst:27: WARNING: duplicate label compilation, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/api_reference.rst
../README.rst:67: WARNING: Document may not end with a transition.
../README.rst:3: WARNING: duplicate label quantify-scheduler, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/index.rst
../README.rst:43: WARNING: duplicate label about, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/index.rst
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:122: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler import Schedule
  sched = Schedule('Bell experiment')
  sched
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:130: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  sched.data
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:136: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  # define the resources
  # q0, q1 = Qubits(n=2) # assumes all to all connectivity
  q0, q1 = ('q0', 'q1') # we use strings because Resources have not been implemented yet
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:145: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from quantify.scheduler.gate_library import Reset, Measure, CZ, Rxy, X90

    # Define the operations, these will be added to the circuit
    init_all = Reset(q0, q1)
    x90_q0 = Rxy(theta=90, phi=0, qubit=q0)
    cz = CZ(qC=q0, qT=q1)
    Rxy_theta = Rxy(theta=23, phi=0, qubit=q0) # will be not be used in the experiment loop.
    meass_all = Measure(q0, q1)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:158: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # Rxy_theta  # produces the same output
    Rxy_theta.data
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:165: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    import numpy as np

    # we use a regular for loop as we have to unroll the changing theta variable here
    for theta in np.linspace(0, 360, 21):
        sched.add(init_all)
        sched.add(x90_q0)
        sched.add(operation=cz)
        sched.add(Rxy(theta=theta, phi=0, qubit=q0))
        sched.add(Measure(q0, q1), label='M {:.2f} deg'.format(theta))
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:179: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    sched
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:185: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    sched.data.keys()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:192: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from itertools import islice
    # showing the first 5 elements of the operation dict
    dict(islice(sched.data['operation_dict'].items(), 5))
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:200: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  sched.data['timing_constraints'][:6]
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:211: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.compilation import _determine_absolute_timing
  # We modify the schedule in place adding timing information
  # setting clock_unit='ideal' ignores the duration of operations and sets it to 1.
  _determine_absolute_timing(sched, clock_unit='ideal')
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:220: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  %matplotlib inline

  from quantify.scheduler.backends import visualization as viz
  f, ax = viz.circuit_diagram_matplotlib(sched)
  # all gates are plotted, but it doesn't all fit in a matplotlib figure
  ax.set_xlim(-.5, 9.5)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:235: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    #  q0 ro_pulse_modulation_freq should be 80e6, requires issue38 resolution
    device_test_cfg = {
          "qubits":
          {
              "q0": {"mw_amp180": 0.5, "mw_motzoi": -0.25, "mw_duration": 20e-9,
                     "mw_modulation_freq": 50e6, "mw_ef_amp180": 0.87, "mw_ch": "qcm0.s0",
                     "ro_ch": "qrm0.s0", "ro_pulse_amp": 0.5, "ro_pulse_modulation_freq": 80e6,
                     "ro_pulse_type": "square", "ro_pulse_duration": 150e-9,
                     "ro_acq_delay": 120e-9, "ro_acq_integration_time": 700e-9,
                     "ro_acq_weigth_type": "SSB",
                     "init_duration": 250e-6
                     },
              "q1": {"mw_amp180": 0.45, "mw_motzoi": -0.15, "mw_duration": 20e-9,
                     "mw_modulation_freq": 80e6, "mw_ef_amp180": 0.27, "mw_ch": "qcm1.s0",
                     "ro_ch": "qrm0.s1", "ro_pulse_amp": 0.5, "ro_pulse_modulation_freq": -23e6,
                     "ro_pulse_type": "square", "ro_pulse_duration": 100e-9,
                     "ro_acq_delay": 120e-9, "ro_acq_integration_time": 700e-9,
                     "ro_acq_weigth_type": "SSB",
                     "init_duration": 250e-6 }
          },
          "edges":
          {
              "q0-q1": {
                  "flux_duration": 40e-9,
                  "flux_ch_control": "qcm0.s1", "flux_ch_target": "qcm1.s1",
                  "flux_amp_control": 0.5,  "flux_amp_target": 0,
                  "phase_correction_control": 0,
                  "phase_correction_target": 0}
          }
      }
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:278: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    from quantify.scheduler.resources import CompositeResource, Pulsar_QCM_sequencer, Pulsar_QRM_sequencer
    qcm0 = CompositeResource('qcm0', ['qcm0.s0', 'qcm0.s1'])
    qcm0_s0 = Pulsar_QCM_sequencer('qcm0.s0', instrument_name='qcm0', seq_idx=0)
    qcm0_s1 = Pulsar_QCM_sequencer('qcm0.s1', instrument_name='qcm0', seq_idx=1)

    qcm1 = CompositeResource('qcm1', ['qcm1.s0', 'qcm1.s1'])
    qcm1_s0 = Pulsar_QCM_sequencer('qcm1.s0', instrument_name='qcm1', seq_idx=0)
    qcm1_s1 = Pulsar_QCM_sequencer('qcm1.s1', instrument_name='qcm1', seq_idx=1)

    qrm0 = CompositeResource('qrm0', ['qrm0.s0', 'qrm0.s1'])
    # Currently mocking a readout module using an acquisition module
    qrm0_s0 = Pulsar_QRM_sequencer('qrm0.s0', instrument_name='qrm0', seq_idx=0)
    qrm0_s1 = Pulsar_QRM_sequencer('qrm0.s1', instrument_name='qrm0', seq_idx=1)

    sched.add_resources([qcm0, qcm0_s0, qcm0_s1, qcm1, qcm1_s0, qcm1_s1, qrm0, qrm0_s0, qrm0_s1])
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:298: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.compilation import qcompile
  import quantify.scheduler.backends.pulsar_backend as pb
  sched, config_dict = qcompile(sched, device_test_cfg, backend=pb.pulsar_assembler_backend)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:306: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    config_dict
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:312: WARNING: Title level inconsistent:

Visualization using a pulse diagram
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:317: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

  from quantify.scheduler.backends.visualization import pulse_diagram_plotly
  fig = pulse_diagram_plotly(sched, ch_list=['qcm0.s0', 'qcm1.s0', 'qrm0.s0', 'qrm0.r0'])
  fig.show()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:331: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::

    # todo install from pypi when released
    try:
        from pulsar_qcm.pulsar_qcm import pulsar_qcm_dummy
        from pulsar_qrm.pulsar_qrm import pulsar_qrm_dummy
        PULSAR_ASSEMBLER = True
    except ImportError:
        PULSAR_ASSEMBLER = False
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:343: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        _pulsars = []
        # first we need to create some Instruments representing the other devices in our configuration
        for qcm_name in ['qcm0', 'qcm1']:
            _pulsars.append(pulsar_qcm_dummy(qcm_name))
        for qrm_name in ['qrm0', 'qrm1']:
            _pulsars.append(pulsar_qrm_dummy(qrm_name))
        pb.configure_pulsar_sequencers(config_dict)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:357: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        qcm0 = _pulsars[0]
        qrm0 = _pulsars[2]

        qcm0.arm_sequencer()
        qrm0.arm_sequencer()
        qcm0.start_sequencer()
        qrm0.start_sequencer()
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:374: WARNING: Unknown directive type "jupyter-execute".

.. jupyter-execute::
    :raises:

    if PULSAR_ASSEMBLER:
        seq_idx = 0
        qrm0.stop_sequencer()
        qrm0.store_acquisition(seq_idx, "meas_0", 4800)
        acq = qrm0.get_acquisitions(seq_idx)
/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/sequencer.rst:272: WARNING: duplicate label resources, other instance in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/latest/docs/api_reference.rst
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