Read the Docs build information
Build id: 4377734
Project: icb-scanpy
Version: 4329
Commit: 4d4ddc0806f99d73606d8cffc992114d8d1f46cf
Date: 2026-08-29T10:54:17.564427Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2026-08-29T10:54:18.288323Z, end-time: 2026-08-29T10:54:20.454652Z, duration: 2, exit-code: 0
git clone --depth 1 https://github.com/scverse/scanpy.git .
Cloning into '.'...

[rtd-command-info] start-time: 2026-08-29T10:54:20.538228Z, end-time: 2026-08-29T10:54:22.221054Z, duration: 1, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 pull/4329/head:external-4329
From https://github.com/scverse/scanpy
 * [new ref]         refs/pull/4329/head -> external-4329
 * [new tag]         1.13.0a1            -> 1.13.0a1
 * [new tag]         1.13.0a2            -> 1.13.0a2

[rtd-command-info] start-time: 2026-08-29T10:54:22.987110Z, end-time: 2026-08-29T10:54:23.371264Z, duration: 0, exit-code: 0
git checkout --force 4d4ddc0806f99d73606d8cffc992114d8d1f46cf
Note: switching to '4d4ddc0806f99d73606d8cffc992114d8d1f46cf'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 4d4ddc0 fix: keep FlyBase gene nan when reading 10x mtx

[rtd-command-info] start-time: 2026-08-29T10:54:23.445348Z, end-time: 2026-08-29T10:54:23.487010Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# https://docs.readthedocs.io/en/stable/config-file/v2.html
version: 2
build:
  os: ubuntu-26.04
  tools:
    python: '3.14'
  jobs:
    post_checkout:
      # unshallow so version can be derived from tag
      - git fetch --unshallow || true
    create_environment:
      - asdf plugin add uv
      - asdf install uv latest
      - asdf global uv latest
    pre_build:
      # run towncrier to preview the next version’s release notes
      - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run towncrier build --keep || true
    build:
      html:
        - uvx --from=hatch!=1.18.0 hatch run docs:build -T
        - mv docs/_build $READTHEDOCS_OUTPUT

[rtd-command-info] start-time: 2026-08-29T10:54:23.564287Z, end-time: 2026-08-29T10:54:26.387708Z, duration: 2, exit-code: 0
git fetch --unshallow || true
From https://github.com/scverse/scanpy
 * [new tag]           0.0         -> 0.0
 * [new tag]           0.1         -> 0.1
 * [new tag]           0.2         -> 0.2
 * [new tag]           0.2.1       -> 0.2.1
 * [new tag]           0.2.3       -> 0.2.3
 * [new tag]           0.2.3.5     -> 0.2.3.5
 * [new tag]           0.2.4       -> 0.2.4
 * [new tag]           0.2.5       -> 0.2.5
 * [new tag]           0.2.6       -> 0.2.6
 * [new tag]           0.2.7       -> 0.2.7
 * [new tag]           0.2.8       -> 0.2.8
 * [new tag]           0.2.9       -> 0.2.9
 * [new tag]           0.2.9.1     -> 0.2.9.1
 * [new tag]           0.3         -> 0.3
 * [new tag]           0.3.1       -> 0.3.1
 * [new tag]           0.3.2       -> 0.3.2
 * [new tag]           0.4         -> 0.4
 * [new tag]           0.4.1       -> 0.4.1
 * [new tag]           0.4.2       -> 0.4.2
 * [new tag]           0.4.2.post1 -> 0.4.2.post1
 * [new tag]           0.4.2.post2 -> 0.4.2.post2
 * [new tag]           0.4.3       -> 0.4.3
 * [new tag]           0.4.4       -> 0.4.4
 * [new tag]           1.0         -> 1.0
 * [new tag]           1.0.1       -> 1.0.1
 * [new tag]           1.0.2       -> 1.0.2
 * [new tag]           1.0.3       -> 1.0.3
 * [new tag]           1.0.4       -> 1.0.4
 * [new tag]           1.1         -> 1.1
 * [new tag]           1.10.0.dev0 -> 1.10.0.dev0
 * [new tag]           1.10.0rc1   -> 1.10.0rc1
 * [new tag]           1.11.0      -> 1.11.0
 * [new tag]           1.11.0rc1   -> 1.11.0rc1
 * [new tag]           1.11.0rc2   -> 1.11.0rc2
 * [new tag]           1.12.0      -> 1.12.0
 * [new tag]           1.12.0rc1   -> 1.12.0rc1
 * [new tag]           1.1a1       -> 1.1a1
 * [new tag]           1.1a2       -> 1.1a2
 * [new tag]           1.2.0       -> 1.2.0
 * [new tag]           1.2.1       -> 1.2.1
 * [new tag]           1.2.2       -> 1.2.2
 * [new tag]           1.3         -> 1.3
 * [new tag]           1.3.1       -> 1.3.1
 * [new tag]           1.3.2       -> 1.3.2
 * [new tag]           1.3.3       -> 1.3.3
 * [new tag]           1.3.4       -> 1.3.4
 * [new tag]           1.3.5       -> 1.3.5
 * [new tag]           1.3.6       -> 1.3.6
 * [new tag]           1.3.7       -> 1.3.7
 * [new tag]           1.3.8       -> 1.3.8
 * [new tag]           1.4         -> 1.4
 * [new tag]           1.4.1       -> 1.4.1
 * [new tag]           1.4.2       -> 1.4.2
 * [new tag]           1.4.3       -> 1.4.3
 * [new tag]           1.4.4       -> 1.4.4
 * [new tag]           1.4.5       -> 1.4.5
 * [new tag]           1.4.5.1     -> 1.4.5.1
 * [new tag]           1.4.5.post1 -> 1.4.5.post1
 * [new tag]           1.4.5.post2 -> 1.4.5.post2
 * [new tag]           1.4.5.post3 -> 1.4.5.post3
 * [new tag]           1.4.6       -> 1.4.6
 * [new tag]           1.5.0       -> 1.5.0
 * [new tag]           1.5.0a1     -> 1.5.0a1
 * [new tag]           1.5.1       -> 1.5.1
 * [new tag]           1.6.0       -> 1.6.0
 * [new tag]           1.7.0rc1    -> 1.7.0rc1
 * [new tag]           1.8.0       -> 1.8.0
 * [new tag]           1.8.0.dev0  -> 1.8.0.dev0
 * [new tag]           1.9.0       -> 1.9.0
 * [new tag]           1.9.0.dev0  -> 1.9.0.dev0