Read the Docs build information Build id: 4309904 Project: icb-scanpy Version: 4290 Commit: b907fd7e0ecaa81a87e8e8f1f8c07af5d6e8171c Date: 2026-08-12T12:46:43.524091Z State: cancelled Success: False [rtd-command-info] start-time: 2026-08-12T12:46:44.391699Z, end-time: 2026-08-12T12:46:49.094684Z, duration: 4, exit-code: 0 git clone --depth 1 https://github.com/scverse/scanpy.git . Cloning into '.'... [rtd-command-info] start-time: 2026-08-12T12:46:49.174851Z, end-time: 2026-08-12T12:46:50.828707Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/4290/head:external-4290 From https://github.com/scverse/scanpy * [new ref] refs/pull/4290/head -> external-4290 * [new tag] 1.13.0a1 -> 1.13.0a1 [rtd-command-info] start-time: 2026-08-12T12:46:51.626383Z, end-time: 2026-08-12T12:46:51.756288Z, duration: 0, exit-code: 0 git checkout --force b907fd7e0ecaa81a87e8e8f1f8c07af5d6e8171c Note: switching to 'b907fd7e0ecaa81a87e8e8f1f8c07af5d6e8171c'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b907fd7 Merge branch 'main' into perf/update-harmony-kmeans-and-defaults [rtd-command-info] start-time: 2026-08-12T12:46:51.835363Z, end-time: 2026-08-12T12:46:51.874830Z, duration: 0, exit-code: 0 cat .readthedocs.yml # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 build: os: ubuntu-24.04 tools: python: '3.13' jobs: post_checkout: # unshallow so version can be derived from tag - git fetch --unshallow || true create_environment: - asdf plugin add uv - asdf install uv latest - asdf global uv latest pre_build: # run towncrier to preview the next version’s release notes - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run towncrier build --keep || true build: html: - uvx hatch run docs:build -T - mv docs/_build $READTHEDOCS_OUTPUT [rtd-command-info] start-time: 2026-08-12T12:46:51.954406Z, end-time: 2026-08-12T12:46:55.471424Z, duration: 3, exit-code: 0 git fetch --unshallow || true From https://github.com/scverse/scanpy * [new tag] 0.0 -> 0.0 * [new tag] 0.1 -> 0.1 * [new tag] 0.2 -> 0.2 * [new tag] 0.2.1 -> 0.2.1 * [new tag] 0.2.3 -> 0.2.3 * [new tag] 0.2.3.5 -> 0.2.3.5 * [new tag] 0.2.4 -> 0.2.4 * [new tag] 0.2.5 -> 0.2.5 * [new tag] 0.2.6 -> 0.2.6 * [new tag] 0.2.7 -> 0.2.7 * [new tag] 0.2.8 -> 0.2.8 * [new tag] 0.2.9 -> 0.2.9 * [new tag] 0.2.9.1 -> 0.2.9.1 * [new tag] 0.3 -> 0.3 * [new tag] 0.3.1 -> 0.3.1 * [new tag] 0.3.2 -> 0.3.2 * [new tag] 0.4 -> 0.4 * [new tag] 0.4.1 -> 0.4.1 * [new tag] 0.4.2 -> 0.4.2 * [new tag] 0.4.2.post1 -> 0.4.2.post1 * [new tag] 0.4.2.post2 -> 0.4.2.post2 * [new tag] 0.4.3 -> 0.4.3 * [new tag] 0.4.4 -> 0.4.4 * [new tag] 1.0 -> 1.0 * [new tag] 1.0.1 -> 1.0.1 * [new tag] 1.0.2 -> 1.0.2 * [new tag] 1.0.3 -> 1.0.3 * [new tag] 1.0.4 -> 1.0.4 * [new tag] 1.1 -> 1.1 * [new tag] 1.10.0.dev0 -> 1.10.0.dev0 * [new tag] 1.10.0rc1 -> 1.10.0rc1 * [new tag] 1.11.0 -> 1.11.0 * [new tag] 1.11.0rc1 -> 1.11.0rc1 * [new tag] 1.11.0rc2 -> 1.11.0rc2 * [new tag] 1.12.0 -> 1.12.0 * [new tag] 1.12.0rc1 -> 1.12.0rc1 * [new tag] 1.1a1 -> 1.1a1 * [new tag] 1.1a2 -> 1.1a2 * [new tag] 1.2.0 -> 1.2.0 * [new tag] 1.2.1 -> 1.2.1 * [new tag] 1.2.2 -> 1.2.2 * [new tag] 1.3 -> 1.3 * [new tag] 1.3.1 -> 1.3.1 * [new tag] 1.3.2 -> 1.3.2 * [new tag] 1.3.3 -> 1.3.3 * [new tag] 1.3.4 -> 1.3.4 * [new tag] 1.3.5 -> 1.3.5 * [new tag] 1.3.6 -> 1.3.6 * [new tag] 1.3.7 -> 1.3.7 * [new tag] 1.3.8 -> 1.3.8 * [new tag] 1.4 -> 1.4 * [new tag] 1.4.1 -> 1.4.1 * [new tag] 1.4.2 -> 1.4.2 * [new tag] 1.4.3 -> 1.4.3 * [new tag] 1.4.4 -> 1.4.4 * [new tag] 1.4.5 -> 1.4.5 * [new tag] 1.4.5.1 -> 1.4.5.1 * [new tag] 1.4.5.post1 -> 1.4.5.post1 * [new tag] 1.4.5.post2 -> 1.4.5.post2 * [new tag] 1.4.5.post3 -> 1.4.5.post3 * [new tag] 1.4.6 -> 1.4.6 * [new tag] 1.5.0 -> 1.5.0 * [new tag] 1.5.0a1 -> 1.5.0a1 * [new tag] 1.5.1 -> 1.5.1 * [new tag] 1.6.0 -> 1.6.0 * [new tag] 1.7.0rc1 -> 1.7.0rc1 * [new tag] 1.8.0 -> 1.8.0 * [new tag] 1.8.0.dev0 -> 1.8.0.dev0 * [new tag] 1.9.0 -> 1.9.0 * [new tag] 1.9.0.dev0 -> 1.9.0.dev0 [rtd-command-info] start-time: 2026-08-12T12:46:59.832675Z, end-time: 2026-08-12T12:46:59.887646Z, duration: 0, exit-code: 0 asdf global python 3.13.14 [rtd-command-info] start-time: 2026-08-12T12:47:00.238460Z, end-time: 2026-08-12T12:47:01.524428Z, duration: 1, exit-code: 0 asdf plugin add uv updating plugin repository...From https://github.com/asdf-vm/asdf-plugins 8e311ee..3715919 master -> origin/master * [new branch] dependabot/github_actions/actions/checkout-6 -> origin/dependabot/github_actions/actions/checkout-6 * [new branch] dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 -> origin/dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 * [new branch] dependabot/github_actions/asdf-vm/actions-4 -> origin/dependabot/github_actions/asdf-vm/actions-4 * [new branch] tb/remove-deleted-plugins -> origin/tb/remove-deleted-plugins HEAD is now at 3715919 feat: add elp plugin (#1089) [rtd-command-info] start-time: 2026-08-12T12:47:01.596754Z, end-time: 2026-08-12T12:47:02.591883Z, duration: 0, exit-code: 0 asdf install uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.12.3 * Downloading uv release 0.12.3... uv 0.12.3 installation was successful! [rtd-command-info] start-time: 2026-08-12T12:47:02.676493Z, end-time: 2026-08-12T12:47:02.791698Z, duration: 0, exit-code: 0 asdf global uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.12.3 [rtd-command-info] start-time: 2026-08-12T12:47:02.927789Z, end-time: 2026-08-12T12:47:09.366710Z, duration: 6, exit-code: 0 ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run towncrier build --keep || true Downloading cryptography (4.5MiB) Downloading uv (21.3MiB) Downloading pygments (1.2MiB) Downloading virtualenv (5.1MiB) Downloaded uv Downloaded cryptography Downloaded virtualenv Downloaded pygments Installed 43 packages in 18ms Creating environment: default Installing project in development mode Checking dependencies Syncing dependencies Loading template... Finding news fragments... Rendering news fragments... Writing to newsfile... Staging newsfile... Keeping the following files: /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/4290/docs/release-notes/4260.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/4290/docs/release-notes/4263.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/4290/docs/release-notes/4231.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/4290/docs/release-notes/4232.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/4290/docs/release-notes/4252.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/4290/docs/release-notes/4256.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/4290/docs/release-notes/4269.feat.md Done! [rtd-command-info] start-time: None, end-time: None, duration: None, exit-code: None uvx hatch run docs:build -T