Read the Docs build information Build id: 4278064 Project: icb-anndata Version: 2577 Commit: 34d1de59c7a6d9fdb40888ab5209423a46e38f7d Date: 2026-08-03T13:49:05.607109Z State: finished Success: False [rtd-command-info] start-time: 2026-08-03T13:49:07.109922Z, end-time: 2026-08-03T13:49:08.208000Z, duration: 1, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2026-08-03T13:49:08.275000Z, end-time: 2026-08-03T13:49:08.734388Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/2577/head:external-2577 From https://github.com/scverse/anndata * [new ref] refs/pull/2577/head -> external-2577 [rtd-command-info] start-time: 2026-08-03T13:49:09.505445Z, end-time: 2026-08-03T13:49:09.571081Z, duration: 0, exit-code: 0 git checkout --force 34d1de59c7a6d9fdb40888ab5209423a46e38f7d Note: switching to '34d1de59c7a6d9fdb40888ab5209423a46e38f7d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 34d1de5 fix layer types [rtd-command-info] start-time: 2026-08-03T13:49:09.642922Z, end-time: 2026-08-03T13:49:09.688044Z, duration: 0, exit-code: 0 cat .readthedocs.yml # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 build: os: ubuntu-24.04 tools: python: "3.14" jobs: post_checkout: # unshallow so version can be derived from tag - git fetch --unshallow || true create_environment: - asdf plugin add uv - asdf install uv latest - asdf global uv latest pre_build: # run towncrier to preview the next version’s release notes - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true build: html: - uvx hatch run docs:build - mv docs/_build $READTHEDOCS_OUTPUT submodules: include: - "docs/tutorials/notebooks" recursive: true [rtd-command-info] start-time: 2026-08-03T13:49:09.833258Z, end-time: 2026-08-03T13:49:10.009785Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2026-08-03T13:49:10.087090Z, end-time: 2026-08-03T13:49:11.722696Z, duration: 1, exit-code: 0 git submodule update --init --force --recursive -- docs/tutorials/notebooks Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks' Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/docs/tutorials/notebooks'... From https://github.com/scverse/anndata-tutorials * branch a4f6d62a8f5cf922d7e3ba48db72b91e0dd458e1 -> FETCH_HEAD Submodule path 'docs/tutorials/notebooks': checked out 'a4f6d62a8f5cf922d7e3ba48db72b91e0dd458e1' [rtd-command-info] start-time: 2026-08-03T13:49:11.790737Z, end-time: 2026-08-03T13:49:13.308447Z, duration: 1, exit-code: 0 git fetch --unshallow || true From https://github.com/scverse/anndata * [new tag] 0.10.0 -> 0.10.0 * [new tag] 0.10.0.dev0 -> 0.10.0.dev0 * [new tag] 0.10.0rc1 -> 0.10.0rc1 * [new tag] 0.11.0 -> 0.11.0 * [new tag] 0.11.0.dev0 -> 0.11.0.dev0 * [new tag] 0.11.0rc1 -> 0.11.0rc1 * [new tag] 0.11.0rc2 -> 0.11.0rc2 * [new tag] 0.11.0rc3 -> 0.11.0rc3 * [new tag] 0.12.0 -> 0.12.0 * [new tag] 0.12.0rc1 -> 0.12.0rc1 * [new tag] 0.12.0rc2 -> 0.12.0rc2 * [new tag] 0.12.0rc3 -> 0.12.0rc3 * [new tag] 0.12.0rc4 -> 0.12.0rc4 * [new tag] 0.13.0 -> 0.13.0 * [new tag] 0.13.0rc1 -> 0.13.0rc1 * [new tag] 0.13.0rc2 -> 0.13.0rc2 * [new tag] 0.13.0rc3 -> 0.13.0rc3 * [new tag] 0.3 -> 0.3 * [new tag] 0.3.0.1 -> 0.3.0.1 * [new tag] 0.3.0.3 -> 0.3.0.3 * [new tag] 0.3.1 -> 0.3.1 * [new tag] 0.3.2 -> 0.3.2 * [new tag] 0.3.3 -> 0.3.3 * [new tag] 0.3.4 -> 0.3.4 * [new tag] 0.4.1 -> 0.4.1 * [new tag] 0.4.2 -> 0.4.2 * [new tag] 0.4.3 -> 0.4.3 * [new tag] 0.4.4 -> 0.4.4 * [new tag] 0.5 -> 0.5 * [new tag] 0.5.1 -> 0.5.1 * [new tag] 0.5.10 -> 0.5.10 * [new tag] 0.5.2 -> 0.5.2 * [new tag] 0.5.3 -> 0.5.3 * [new tag] 0.5.4 -> 0.5.4 * [new tag] 0.5.5 -> 0.5.5 * [new tag] 0.5.6 -> 0.5.6 * [new tag] 0.5.7 -> 0.5.7 * [new tag] 0.5.8 -> 0.5.8 * [new tag] 0.5.9 -> 0.5.9 * [new tag] 0.6 -> 0.6 * [new tag] 0.6.1 -> 0.6.1 * [new tag] 0.6.10 -> 0.6.10 * [new tag] 0.6.11 -> 0.6.11 * [new tag] 0.6.12 -> 0.6.12 * [new tag] 0.6.13 -> 0.6.13 * [new tag] 0.6.14 -> 0.6.14 * [new tag] 0.6.15 -> 0.6.15 * [new tag] 0.6.17 -> 0.6.17 * [new tag] 0.6.18 -> 0.6.18 * [new tag] 0.6.19 -> 0.6.19 * [new tag] 0.6.2 -> 0.6.2 * [new tag] 0.6.20 -> 0.6.20 * [new tag] 0.6.21 -> 0.6.21 * [new tag] 0.6.22 -> 0.6.22 * [new tag] 0.6.22.post1 -> 0.6.22.post1 * [new tag] 0.6.22rc1 -> 0.6.22rc1 * [new tag] 0.6.3 -> 0.6.3 * [new tag] 0.6.4 -> 0.6.4 * [new tag] 0.6.5 -> 0.6.5 * [new tag] 0.6.6 -> 0.6.6 * [new tag] 0.6.7 -> 0.6.7 * [new tag] 0.6.8 -> 0.6.8 * [new tag] 0.6.9 -> 0.6.9 * [new tag] 0.7 -> 0.7 * [new tag] 0.7.1 -> 0.7.1 * [new tag] 0.7.2 -> 0.7.2 * [new tag] 0.7.2a1 -> 0.7.2a1 * [new tag] 0.7.3 -> 0.7.3 * [new tag] 0.7.4 -> 0.7.4 * [new tag] 0.7.5 -> 0.7.5 * [new tag] 0.7.6 -> 0.7.6 * [new tag] 0.7.7 -> 0.7.7 * [new tag] 0.7.8 -> 0.7.8 * [new tag] 0.7rc1 -> 0.7rc1 * [new tag] 0.7rc2 -> 0.7rc2 * [new tag] 0.8.0 -> 0.8.0 * [new tag] 0.8.0.dev0 -> 0.8.0.dev0 * [new tag] 0.8.0rc1 -> 0.8.0rc1 * [new tag] 0.9.0.dev0 -> 0.9.0.dev0 * [new tag] 0.9.0rc1 -> 0.9.0rc1 [rtd-command-info] start-time: 2026-08-03T13:49:18.836771Z, end-time: 2026-08-03T13:49:18.938262Z, duration: 0, exit-code: 0 asdf global python 3.14.6 [rtd-command-info] start-time: 2026-08-03T13:49:19.503062Z, end-time: 2026-08-03T13:49:21.005389Z, duration: 1, exit-code: 0 asdf plugin add uv updating plugin repository...From https://github.com/asdf-vm/asdf-plugins 8e311ee..3715919 master -> origin/master * [new branch] dependabot/github_actions/actions/checkout-6 -> origin/dependabot/github_actions/actions/checkout-6 * [new branch] dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 -> origin/dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 * [new branch] dependabot/github_actions/asdf-vm/actions-4 -> origin/dependabot/github_actions/asdf-vm/actions-4 * [new branch] tb/remove-deleted-plugins -> origin/tb/remove-deleted-plugins HEAD is now at 3715919 feat: add elp plugin (#1089) [rtd-command-info] start-time: 2026-08-03T13:49:21.071800Z, end-time: 2026-08-03T13:49:22.151629Z, duration: 1, exit-code: 0 asdf install uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.12.1 * Downloading uv release 0.12.1... uv 0.12.1 installation was successful! [rtd-command-info] start-time: 2026-08-03T13:49:22.227472Z, end-time: 2026-08-03T13:49:22.499087Z, duration: 0, exit-code: 0 asdf global uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.12.1 [rtd-command-info] start-time: 2026-08-03T13:49:22.615857Z, end-time: 2026-08-03T13:49:28.473537Z, duration: 5, exit-code: 0 ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true Downloading pygments (1.2MiB) Downloading cryptography (4.5MiB) Downloading uv (21.3MiB) Downloading virtualenv (5.2MiB) Downloaded uv Downloaded virtualenv Downloaded cryptography Downloaded pygments Installed 42 packages in 53ms Creating environment: docs Installing project in development mode Checking dependencies Syncing dependencies Loading template... Finding news fragments... Rendering news fragments... Writing to newsfile... Staging newsfile... Keeping the following files: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/docs/release-notes/2577.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/docs/release-notes/2577.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/docs/release-notes/2538.docs.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/docs/release-notes/2577.chore.md Done! [rtd-command-info] start-time: 2026-08-03T13:49:28.543896Z, end-time: 2026-08-03T13:49:38.667368Z, duration: 10, exit-code: 1 uvx hatch run docs:build Running Sphinx v9.1.0 loading translations [en]... done matplotlib is not installed, social cards will not be generated making output directory... done myst v5.1.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence', 'html_image', 'dollarmath'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, strikethrough_single_tilde=False, colon_fence_exact_match=False, suppress_warnings=[], highlight_code_blocks=True) myst-nb v1.4.0: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, eval_name_regex='^[a-zA-Z_][a-zA-Z0-9_]*$', execution_mode='off', execution_cache_path='', execution_excludepatterns=(), execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, scroll_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False) Using jupyter-cache at: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/docs/_build/.jupyter_cache loading intersphinx inventory 'array_api' from https://array-api.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'awkward' from https://awkward-array.org/doc/stable/objects.inv ... loading intersphinx inventory 'cupy' from https://docs.cupy.dev/en/stable/objects.inv ... loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... loading intersphinx inventory 'fsspec' from https://filesystem-spec.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'h5py' from https://docs.h5py.org/en/latest/objects.inv ... loading intersphinx inventory 'hdf5plugin' from https://hdf5plugin.readthedocs.io/en/latest/objects.inv ... loading intersphinx inventory 'kvikio' from https://docs.rapids.ai/api/kvikio/stable/objects.inv ... loading intersphinx inventory 'loompy' from https://linnarssonlab.org/loompy/objects.inv ... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'obstore' from https://developmentseed.org/obstore/latest/objects.inv ... loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... loading intersphinx inventory 'scverse_misc' from https://scverse-misc.readthedocs.io/stable/objects.inv ... loading intersphinx inventory 'sklearn' from https://scikit-learn.org/stable/objects.inv ... loading intersphinx inventory 'xarray' from https://docs.xarray.dev/en/stable/objects.inv ... loading intersphinx inventory 'zarr' from https://zarr.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'zarrs' from https://zarrs-python.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'annbatch' from https://annbatch.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'mudata' from https://mudata.readthedocs.io/stable/objects.inv ... [autosummary] generating autosummary for: _key_contributors.rst, accessors.rst, api.md, contributing.md, fileformat-prose.md, generated/anndata.types.ExtensionNamespace.rst, index.md, interoperability.md, references.rst, release-notes/index.md, ..., tutorials/index.md, tutorials/notebooks/annbatch.ipynb, tutorials/notebooks/anncollection.ipynb, tutorials/notebooks/anndata_dask_array.ipynb, tutorials/notebooks/awkward-arrays.ipynb, tutorials/notebooks/getting-started.ipynb, tutorials/notebooks/read_lazy.ipynb, tutorials/notebooks/{read,write}_dispatched.ipynb, tutorials/zarr-v3.md, typing.md + Exception Group Traceback (most recent call last): | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/generate.py", line 664, in generate_autosummary_docs | name, obj, parent, modname = import_by_name(entry.name) | ~~~~~~~~~~~~~~^^^^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 682, in import_by_name | raise ImportExceptionGroup(msg, exceptions) | sphinx.ext.autosummary.ImportExceptionGroup: could not import anndata.AnnData (4 sub-exceptions) +-+---------------- 1 ---------------- | Traceback (most recent call last): | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 696, in _import_by_name | mod = _import_module(modname) | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module | module = importlib.import_module(modname) | File "/home/docs/.asdf/installs/python/3.14.6/lib/python3.14/importlib/__init__.py", line 88, in import_module | return _bootstrap._gcd_import(name[level:], package, level) | ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | File "", line 1406, in _gcd_import | File "", line 1371, in _find_and_load | File "", line 1342, in _find_and_load_unlocked | File "", line 938, in _load_unlocked | File "", line 759, in exec_module | File "", line 491, in _call_with_frames_removed | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/__init__.py", line 5, in | from ._core.anndata import AnnData | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/anndata.py", line 54, in | from .aligned_mapping import ( | ...<6 lines>... | ) | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/aligned_mapping.py", line 20, in | from ..typing import AlignedArray, InMemoryArray | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/typing.py", line 18, in | from ._core.anndata import AnnData | ImportError: cannot import name 'AnnData' from partially initialized module 'anndata._core.anndata' (most likely due to a circular import) (/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/anndata.py) +---------------- 2 ---------------- | Traceback (most recent call last): | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 708, in _import_by_name | _import_module(modname) | ~~~~~~~~~~~~~~^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 215, in _import_module | spec = find_spec(modname) | File "", line 90, in find_spec | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/__init__.py", line 5, in | from ._core.anndata import AnnData | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/anndata.py", line 54, in | from .aligned_mapping import ( | ...<6 lines>... | ) | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/aligned_mapping.py", line 20, in | from ..typing import AlignedArray, InMemoryArray | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/typing.py", line 18, in | from ._core.anndata import AnnData | ImportError: cannot import name 'AnnData' from partially initialized module 'anndata._core.anndata' (most likely due to a circular import) (/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/anndata.py) +---------------- 3 ---------------- | Traceback (most recent call last): | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 708, in _import_by_name | _import_module(modname) | ~~~~~~~~~~~~~~^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module | module = importlib.import_module(modname) | File "/home/docs/.asdf/installs/python/3.14.6/lib/python3.14/importlib/__init__.py", line 88, in import_module | return _bootstrap._gcd_import(name[level:], package, level) | ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | File "", line 1406, in _gcd_import | File "", line 1371, in _find_and_load | File "", line 1342, in _find_and_load_unlocked | File "", line 938, in _load_unlocked | File "", line 759, in exec_module | File "", line 491, in _call_with_frames_removed | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/__init__.py", line 5, in | from ._core.anndata import AnnData | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/anndata.py", line 54, in | from .aligned_mapping import ( | ...<6 lines>... | ) | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/aligned_mapping.py", line 20, in | from ..typing import AlignedArray, InMemoryArray | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/typing.py", line 18, in | from ._core.anndata import AnnData | ImportError: cannot import name 'AnnData' from partially initialized module 'anndata._core.anndata' (most likely due to a circular import) (/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/anndata.py) +---------------- 4 ---------------- | Traceback (most recent call last): | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 717, in _import_by_name | obj = sys.modules[modname] | ~~~~~~~~~~~^^^^^^^^^ | KeyError: 'anndata' +------------------------------------ During handling of the above exception, another exception occurred: + Exception Group Traceback (most recent call last): | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/bin/sphinx-build", line 10, in | sys.exit(main()) | ~~~~^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/cmd/build.py", line 491, in main | return make_mode.run_make_mode(argv[1:]) | ~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/cmd/make_mode.py", line 223, in run_make_mode | return make.run_generic_build(builder_name) | ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/cmd/make_mode.py", line 206, in run_generic_build | return build_main(args + self.opts) | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/cmd/build.py", line 414, in build_main | app = Sphinx( | srcdir=args.sourcedir, | ...<14 lines>... | exception_on_warning=args.exception_on_warning, | ) | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/application.py", line 340, in __init__ | self._init_builder() | ~~~~~~~~~~~~~~~~~~^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/application.py", line 430, in _init_builder | self.events.emit('builder-inited') | ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/events.py", line 441, in emit | results.append(listener.handler(self._app, *args)) | ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 870, in process_generate_options | generate_autosummary_docs( | ~~~~~~~~~~~~~~~~~~~~~~~~~^ | genfiles, | ^^^^^^^^^ | ...<5 lines>... | encoding=app.config.source_encoding, | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | ) | ^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/generate.py", line 669, in generate_autosummary_docs | name, obj, parent, modname = import_ivar_by_name(entry.name) | ~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 740, in import_ivar_by_name | real_name, obj, _parent, modname = import_by_name(name, prefixes) | ~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 682, in import_by_name | raise ImportExceptionGroup(msg, exceptions) | sphinx.ext.autosummary.ImportExceptionGroup: could not import anndata (2 sub-exceptions) +-+---------------- 1 ---------------- | Traceback (most recent call last): | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 708, in _import_by_name | _import_module(modname) | ~~~~~~~~~~~~~~^^^^^^^^^ | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autodoc/_dynamic/_importer.py", line 221, in _import_module | module = importlib.import_module(modname) | File "/home/docs/.asdf/installs/python/3.14.6/lib/python3.14/importlib/__init__.py", line 88, in import_module | return _bootstrap._gcd_import(name[level:], package, level) | ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | File "", line 1406, in _gcd_import | File "", line 1371, in _find_and_load | File "", line 1342, in _find_and_load_unlocked | File "", line 938, in _load_unlocked | File "", line 759, in exec_module | File "", line 491, in _call_with_frames_removed | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/__init__.py", line 5, in | from ._core.anndata import AnnData | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/anndata.py", line 54, in | from .aligned_mapping import ( | ...<6 lines>... | ) | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/aligned_mapping.py", line 20, in | from ..typing import AlignedArray, InMemoryArray | File "/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/typing.py", line 18, in | from ._core.anndata import AnnData | ImportError: cannot import name 'AnnData' from partially initialized module 'anndata._core.anndata' (most likely due to a circular import) (/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2577/src/anndata/_core/anndata.py) +---------------- 2 ---------------- | Traceback (most recent call last): | File "/home/docs/.local/share/hatch/env/virtual/anndata/dRGDcBb9/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py", line 723, in _import_by_name | return sys.modules[modname], None, modname | ~~~~~~~~~~~^^^^^^^^^ | KeyError: 'anndata' +------------------------------------