Read the Docs build information Build id: 420728 Project: institute-for-disease-modeling-covasim Version: latest Commit: 36645aab7958949b6262cc482cf6fb58be9f87c5 Date: 2020-09-14T16:06:38.967695Z State: finished Success: False [rtd-command-info] start-time: 2020-09-14T16:06:41.936268Z, end-time: 2020-09-14T16:06:43.568763Z, duration: 1, exit-code: 0 git clone --no-single-branch --depth 50 https://github.com/InstituteforDiseaseModeling/covasim.git . Cloning into '.'... [rtd-command-info] start-time: 2020-09-14T16:06:44.514023Z, end-time: 2020-09-14T16:06:44.590057Z, duration: 0, exit-code: 0 git checkout --force origin/master Note: checking out 'origin/master'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example: git checkout -b HEAD is now at 36645aa Delete CNAME [rtd-command-info] start-time: 2020-09-14T16:06:44.720258Z, end-time: 2020-09-14T16:06:44.782151Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2020-09-14T16:06:46.422807Z, end-time: 2020-09-14T16:06:50.792183Z, duration: 4, exit-code: 0 python3.7 -mvirtualenv Using base prefix '/home/docs/.pyenv/versions/3.7.3' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin/python3.7 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin/python Installing setuptools, pip, wheel... done. [rtd-command-info] start-time: 2020-09-14T16:06:51.006711Z, end-time: 2020-09-14T16:06:51.720217Z, duration: 0, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (20.2.3) [rtd-command-info] start-time: 2020-09-14T16:06:52.014737Z, end-time: 2020-09-14T16:07:00.459030Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1 Collecting Pygments==2.3.1 Downloading Pygments-2.3.1-py2.py3-none-any.whl (849 kB) Collecting setuptools==41.0.1 Downloading setuptools-41.0.1-py2.py3-none-any.whl (575 kB) Collecting docutils==0.14 Downloading docutils-0.14-py3-none-any.whl (543 kB) Collecting mock==1.0.1 Downloading mock-1.0.1.tar.gz (818 kB) Collecting pillow==5.4.1 Downloading Pillow-5.4.1-cp37-cp37m-manylinux1_x86_64.whl (2.0 MB) Collecting alabaster!=0.7.5,<0.8,>=0.7 Downloading alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting commonmark==0.8.1 Downloading commonmark-0.8.1-py2.py3-none-any.whl (47 kB) Collecting recommonmark==0.5.0 Downloading recommonmark-0.5.0-py2.py3-none-any.whl (9.8 kB) Collecting sphinx<2 Downloading Sphinx-1.8.5-py2.py3-none-any.whl (3.1 MB) Collecting sphinx-rtd-theme<0.5 Downloading sphinx_rtd_theme-0.4.3-py2.py3-none-any.whl (6.4 MB) Collecting readthedocs-sphinx-ext<1.1 Downloading readthedocs_sphinx_ext-1.0.4-py2.py3-none-any.whl (28 kB) Collecting future Downloading future-0.18.2.tar.gz (829 kB) Collecting Jinja2>=2.3 Downloading Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting babel!=2.0,>=1.3 Downloading Babel-2.8.0-py2.py3-none-any.whl (8.6 MB) Collecting imagesize Downloading imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting requests>=2.0.0 Downloading requests-2.24.0-py2.py3-none-any.whl (61 kB) Collecting packaging Downloading packaging-20.4-py2.py3-none-any.whl (37 kB) Collecting sphinxcontrib-websupport Downloading sphinxcontrib_websupport-1.2.4-py2.py3-none-any.whl (39 kB) Collecting six>=1.5 Downloading six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting snowballstemmer>=1.1 Downloading snowballstemmer-2.0.0-py2.py3-none-any.whl (97 kB) Collecting MarkupSafe>=0.23 Downloading MarkupSafe-1.1.1-cp37-cp37m-manylinux1_x86_64.whl (27 kB) Collecting pytz>=2015.7 Downloading pytz-2020.1-py2.py3-none-any.whl (510 kB) Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 Downloading urllib3-1.25.10-py2.py3-none-any.whl (127 kB) Collecting certifi>=2017.4.17 Downloading certifi-2020.6.20-py2.py3-none-any.whl (156 kB) Collecting chardet<4,>=3.0.2 Downloading chardet-3.0.4-py2.py3-none-any.whl (133 kB) Collecting idna<3,>=2.5 Downloading idna-2.10-py2.py3-none-any.whl (58 kB) Collecting pyparsing>=2.0.2 Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting sphinxcontrib-serializinghtml Downloading sphinxcontrib_serializinghtml-1.1.4-py2.py3-none-any.whl (89 kB) Building wheels for collected packages: mock, future Building wheel for mock (setup.py): started Building wheel for mock (setup.py): finished with status 'done' Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=bd1da349dc4d001c5aa7676f44eb7ba71f20fd0d8bf7ab49b681e8fecc4c2458 Stored in directory: /tmp/pip-ephem-wheel-cache-596r16vc/wheels/16/03/37/f0a64ab894c9102906f192db1a4071b7592292ad661563c69b Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=1f8361b8944621d6b3c9fa0493428a1b9f0346cbe2a7479418dbc52888921a9a Stored in directory: /tmp/pip-ephem-wheel-cache-596r16vc/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0 Successfully built mock future Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, MarkupSafe, Jinja2, pytz, babel, imagesize, urllib3, certifi, chardet, idna, requests, six, pyparsing, packaging, sphinxcontrib-serializinghtml, sphinxcontrib-websupport, snowballstemmer, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext Attempting uninstall: setuptools Found existing installation: setuptools 50.3.0 Uninstalling setuptools-50.3.0: Successfully uninstalled setuptools-50.3.0 Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.6.20 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.24.0 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.25.10 [rtd-command-info] start-time: 2020-09-14T16:07:00.794513Z, end-time: 2020-09-14T16:07:05.063002Z, duration: 4, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting sphinx-rtd-theme~=0.5.0 Downloading sphinx_rtd_theme-0.5.0-py2.py3-none-any.whl (10.8 MB) Collecting sphinxcontrib-napoleon~=0.7 Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting sphinx~=3.2.0 Downloading Sphinx-3.2.1-py3-none-any.whl (2.9 MB) Collecting plantweb~=1.2.1 Downloading plantweb-1.2.1-py3-none-any.whl (20 kB) Collecting pytest Downloading pytest-6.0.2-py3-none-any.whl (270 kB) Collecting pockets>=0.3 Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: six>=1.5.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinxcontrib-napoleon~=0.7->-r docs/requirements.txt (line 2)) (1.15.0) Requirement already satisfied: Jinja2>=2.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.11.2) Collecting sphinxcontrib-jsmath Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-applehelp Downloading sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Requirement already satisfied: imagesize in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (1.2.0) Collecting sphinxcontrib-htmlhelp Downloading sphinxcontrib_htmlhelp-1.0.3-py2.py3-none-any.whl (96 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (41.0.1) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (20.4) Requirement already satisfied: sphinxcontrib-serializinghtml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (1.1.4) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (0.7.12) Requirement already satisfied: requests>=2.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.24.0) Requirement already satisfied: Pygments>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.3.1) Collecting sphinxcontrib-devhelp Downloading sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Requirement already satisfied: babel>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.8.0) Requirement already satisfied: snowballstemmer>=1.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: docutils>=0.12 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (0.14) Collecting sphinxcontrib-qthelp Downloading sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Collecting toml Downloading toml-0.10.1-py2.py3-none-any.whl (19 kB) Collecting pluggy<1.0,>=0.12 Downloading pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting py>=1.8.2 Downloading py-1.9.0-py2.py3-none-any.whl (99 kB) Collecting importlib-metadata>=0.12; python_version < "3.8" Downloading importlib_metadata-1.7.0-py2.py3-none-any.whl (31 kB) Collecting more-itertools>=4.0.0 Downloading more_itertools-8.5.0-py3-none-any.whl (44 kB) Collecting iniconfig Downloading iniconfig-1.0.1-py3-none-any.whl (4.2 kB) Collecting attrs>=17.4.0 Downloading attrs-20.2.0-py2.py3-none-any.whl (48 kB) Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (1.1.1) Requirement already satisfied: pyparsing>=2.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from packaging->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.4.7) Requirement already satisfied: chardet<4,>=3.0.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (3.0.4) Requirement already satisfied: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (1.25.10) Requirement already satisfied: idna<3,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2.10) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2020.6.20) Requirement already satisfied: pytz>=2015.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from babel>=1.3->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2020.1) Collecting zipp>=0.5 Downloading zipp-3.1.0-py3-none-any.whl (4.9 kB) Installing collected packages: sphinxcontrib-jsmath, sphinxcontrib-applehelp, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-qthelp, sphinx, sphinx-rtd-theme, pockets, sphinxcontrib-napoleon, plantweb, toml, zipp, importlib-metadata, pluggy, py, more-itertools, iniconfig, attrs, pytest Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.5 Uninstalling Sphinx-1.8.5: Successfully uninstalled Sphinx-1.8.5 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed attrs-20.2.0 importlib-metadata-1.7.0 iniconfig-1.0.1 more-itertools-8.5.0 plantweb-1.2.1 pluggy-0.13.1 pockets-0.9.1 py-1.9.0 pytest-6.0.2 sphinx-3.2.1 sphinx-rtd-theme-0.5.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-qthelp-1.0.3 toml-0.10.1 zipp-3.1.0 [rtd-command-info] start-time: 2020-09-14T16:07:05.366598Z, end-time: 2020-09-14T16:07:12.272071Z, duration: 6, exit-code: 1 python ./setup.py install --force running install running bdist_egg running egg_info creating covasim.egg-info writing covasim.egg-info/PKG-INFO writing dependency_links to covasim.egg-info/dependency_links.txt writing requirements to covasim.egg-info/requires.txt writing top-level names to covasim.egg-info/top_level.txt writing manifest file 'covasim.egg-info/SOURCES.txt' reading manifest file 'covasim.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: manifest_maker: MANIFEST.in, line 3: 'recursive-include' expects ... warning: no previously-included files matching '*.py[cod]' found anywhere in distribution warning: no previously-included files matching '__pycache__' found anywhere in distribution writing manifest file 'covasim.egg-info/SOURCES.txt' installing library code to build/bdist.linux-x86_64/egg running install_lib running build_py creating build creating build/lib creating build/lib/covasim copying covasim/run.py -> build/lib/covasim copying covasim/people.py -> build/lib/covasim copying covasim/analysis.py -> build/lib/covasim copying covasim/parameters.py -> build/lib/covasim copying covasim/misc.py -> build/lib/covasim copying covasim/defaults.py -> build/lib/covasim copying covasim/__init__.py -> build/lib/covasim copying covasim/base.py -> build/lib/covasim copying covasim/interventions.py -> build/lib/covasim copying covasim/version.py -> build/lib/covasim copying covasim/utils.py -> build/lib/covasim copying covasim/population.py -> build/lib/covasim copying covasim/requirements.py -> build/lib/covasim copying covasim/sim.py -> build/lib/covasim copying covasim/plotting.py -> build/lib/covasim creating build/lib/covasim/data copying covasim/data/loaders.py -> build/lib/covasim/data copying covasim/data/household_size_data.py -> build/lib/covasim/data copying covasim/data/__init__.py -> build/lib/covasim/data copying covasim/data/state_age_data.py -> build/lib/covasim/data copying covasim/data/country_age_data.py -> build/lib/covasim/data creating build/lib/covasim/webapp copying covasim/webapp/cova_app.py -> build/lib/covasim/webapp copying covasim/webapp/__init__.py -> build/lib/covasim/webapp creating build/bdist.linux-x86_64 creating build/bdist.linux-x86_64/egg creating build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/run.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/people.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/analysis.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/parameters.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/misc.py -> build/bdist.linux-x86_64/egg/covasim creating build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/loaders.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/household_size_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/__init__.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/state_age_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/data/country_age_data.py -> build/bdist.linux-x86_64/egg/covasim/data copying build/lib/covasim/defaults.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/__init__.py -> build/bdist.linux-x86_64/egg/covasim creating build/bdist.linux-x86_64/egg/covasim/webapp copying build/lib/covasim/webapp/cova_app.py -> build/bdist.linux-x86_64/egg/covasim/webapp copying build/lib/covasim/webapp/__init__.py -> build/bdist.linux-x86_64/egg/covasim/webapp copying build/lib/covasim/base.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/interventions.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/version.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/utils.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/population.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/requirements.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/sim.py -> build/bdist.linux-x86_64/egg/covasim copying build/lib/covasim/plotting.py -> build/bdist.linux-x86_64/egg/covasim byte-compiling build/bdist.linux-x86_64/egg/covasim/run.py to run.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/people.py to people.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/analysis.py to analysis.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/parameters.py to parameters.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/misc.py to misc.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/loaders.py to loaders.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/household_size_data.py to household_size_data.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/state_age_data.py to state_age_data.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/data/country_age_data.py to country_age_data.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/defaults.py to defaults.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/webapp/cova_app.py to cova_app.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/webapp/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/base.py to base.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/interventions.py to interventions.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/version.py to version.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/population.py to population.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/requirements.py to requirements.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/sim.py to sim.cpython-37.pyc byte-compiling build/bdist.linux-x86_64/egg/covasim/plotting.py to plotting.cpython-37.pyc creating build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO copying covasim.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO zip_safe flag not set; analyzing archive contents... covasim.__pycache__.interventions.cpython-37: module MAY be using inspect.getouterframes covasim.__pycache__.interventions.cpython-37: module MAY be using inspect.trace covasim.__pycache__.misc.cpython-37: module references __file__ covasim.__pycache__.misc.cpython-37: module MAY be using inspect.getouterframes covasim.webapp.__pycache__.cova_app.cpython-37: module references __file__ creating dist creating 'dist/covasim-1.6.1-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it removing 'build/bdist.linux-x86_64/egg' (and everything under it) Processing covasim-1.6.1-py3.7.egg creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/covasim-1.6.1-py3.7.egg Extracting covasim-1.6.1-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding covasim 1.6.1 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/covasim-1.6.1-py3.7.egg Processing dependencies for covasim==1.6.1 Searching for fire Reading https://pypi.org/simple/fire/ Downloading https://files.pythonhosted.org/packages/34/a7/0e22e70778aca01a52b9c899d9c145c6396d7b613719cd63db97ffa13f2f/fire-0.3.1.tar.gz#sha256=9736a16227c3d469e5d2d296bce5b4d8fa8d7851e953bda327a455fc2994307f Best match: fire 0.3.1 Processing fire-0.3.1.tar.gz Writing /tmp/easy_install-vuezej63/fire-0.3.1/setup.cfg Running fire-0.3.1/setup.py -q bdist_egg --dist-dir /tmp/easy_install-vuezej63/fire-0.3.1/egg-dist-tmp-q_8wtqbz zip_safe flag not set; analyzing archive contents... fire.__pycache__.core.cpython-37: module MAY be using inspect.stack fire.__pycache__.core.cpython-37: module MAY be using inspect.trace fire.__pycache__.inspectutils.cpython-37: module MAY be using inspect.getsourcefile fire.__pycache__.inspectutils.cpython-37: module MAY be using inspect.findsource creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/fire-0.3.1-py3.7.egg Extracting fire-0.3.1-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages Adding fire 0.3.1 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/fire-0.3.1-py3.7.egg Searching for ipywidgets Reading https://pypi.org/simple/ipywidgets/ Downloading https://files.pythonhosted.org/packages/75/cb/a6d9f104b2be9e0f373ae6deb205cca2186cce9ad96a833eefd4865f2d54/ipywidgets-8.0.0a0-py3-none-any.whl#sha256=9cb5590e583b8ea309a2d8e88fb02e44d054df2a77891f7d3356b0b883b99d3d Best match: ipywidgets 8.0.0a0 Processing ipywidgets-8.0.0a0-py3-none-any.whl Installing ipywidgets-8.0.0a0-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/ipywidgets-8.0.0a0-py3.7.egg/EGG-INFO/requires.txt Adding ipywidgets 8.0.0a0 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/ipywidgets-8.0.0a0-py3.7.egg Searching for plotly Reading https://pypi.org/simple/plotly/ Downloading https://files.pythonhosted.org/packages/04/20/c2d77eef33dbd40c5e3263a9a8763ffca610a4c3d2b2da21c5601e5fc5d8/plotly-4.10.0-py2.py3-none-any.whl#sha256=752f0803588b8d895d604c58fa55119ad104f3fbdd5eb5f7d11a3079680c31c0 Best match: plotly 4.10.0 Processing plotly-4.10.0-py2.py3-none-any.whl Installing plotly-4.10.0-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/plotly-4.10.0-py3.7.egg/EGG-INFO/requires.txt Adding plotly 4.10.0 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/plotly-4.10.0-py3.7.egg Searching for gunicorn Reading https://pypi.org/simple/gunicorn/ Downloading https://files.pythonhosted.org/packages/69/ca/926f7cd3a2014b16870086b2d0fdc84a9e49473c68a8dff8b57f7c156f43/gunicorn-20.0.4-py2.py3-none-any.whl#sha256=cd4a810dd51bf497552cf3f863b575dabd73d6ad6a91075b65936b151cbf4f9c Best match: gunicorn 20.0.4 Processing gunicorn-20.0.4-py2.py3-none-any.whl Installing gunicorn-20.0.4-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/gunicorn-20.0.4-py3.7.egg/EGG-INFO/requires.txt Adding gunicorn 20.0.4 to easy-install.pth file Installing gunicorn script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/gunicorn-20.0.4-py3.7.egg Searching for scirisweb>=0.17.0 Reading https://pypi.org/simple/scirisweb/ Downloading https://files.pythonhosted.org/packages/fd/95/1bdea6908657149c52a7a8172774e9340581aa76cb58b5cecfa31baebb51/scirisweb-0.17.0-py3-none-any.whl#sha256=d03c894fc6482cce3d4b0c24c3d57f2fe2ec33e01c205434c6ed8ce40a7d5dc5 Best match: scirisweb 0.17.0 Processing scirisweb-0.17.0-py3-none-any.whl Installing scirisweb-0.17.0-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/scirisweb-0.17.0-py3.7.egg/EGG-INFO/requires.txt Adding scirisweb 0.17.0 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/scirisweb-0.17.0-py3.7.egg Searching for sciris>=0.17.0 Reading https://pypi.org/simple/sciris/ Downloading https://files.pythonhosted.org/packages/00/41/b9d322d413080daff10aef2309a14f37342f7e1e50f3adf1db0573fee7dc/sciris-0.17.4-py3-none-any.whl#sha256=6baaa7d7cf0def872f624bdcf0525c02ab1a5a48a2a9adca4f4f91d47f61e626 Best match: sciris 0.17.4 Processing sciris-0.17.4-py3-none-any.whl Installing sciris-0.17.4-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages writing requirements to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/sciris-0.17.4-py3.7.egg/EGG-INFO/requires.txt Adding sciris 0.17.4 to easy-install.pth file Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/sciris-0.17.4-py3.7.egg Searching for numba Reading https://pypi.org/simple/numba/ Downloading https://files.pythonhosted.org/packages/5e/81/6fd1dd064bcf71a79da109e8966a39e2da61d68bf0bd1e0839fa997f8c41/numba-0.51.2.tar.gz#sha256=16bd59572114adbf5f600ea383880d7b2071ae45477e84a24994e089ea390768 Best match: numba 0.51.2 Processing numba-0.51.2.tar.gz Writing /tmp/easy_install-a3lhku77/numba-0.51.2/setup.cfg Running numba-0.51.2/setup.py -q bdist_egg --dist-dir /tmp/easy_install-a3lhku77/numba-0.51.2/egg-dist-tmp-xpuozk8u Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 154, in save_modules yield saved File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 195, in setup_context yield File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 250, in run_setup _execfile(setup_script, ns) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 45, in _execfile exec(code, globals, locals) File "/tmp/easy_install-a3lhku77/numba-0.51.2/setup.py", line 354, in File "/tmp/easy_install-a3lhku77/numba-0.51.2/setup.py", line 87, in get_ext_modules ModuleNotFoundError: No module named 'numpy' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "./setup.py", line 74, in install_requires=requirements File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/__init__.py", line 145, in setup return distutils.core.setup(**attrs) File "/home/docs/.pyenv/versions/3.7.3/lib/python3.7/distutils/core.py", line 148, in setup dist.run_commands() File "/home/docs/.pyenv/versions/3.7.3/lib/python3.7/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/home/docs/.pyenv/versions/3.7.3/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/install.py", line 67, in run self.do_egg_install() File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/install.py", line 117, in do_egg_install cmd.run() File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 418, in run self.easy_install(spec, not self.no_deps) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 660, in easy_install return self.install_item(None, spec, tmpdir, deps, True) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 707, in install_item self.process_distribution(spec, dist, deps) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 752, in process_distribution [requirement], self.local_index, self.easy_install File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/pkg_resources/__init__.py", line 782, in resolve replace_conflicting=replace_conflicting File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/pkg_resources/__init__.py", line 1065, in best_match return self.obtain(req, installer) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/pkg_resources/__init__.py", line 1077, in obtain return installer(requirement) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 679, in easy_install return self.install_item(spec, dist.location, tmpdir, deps) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 705, in install_item dists = self.install_eggs(spec, download, tmpdir) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 890, in install_eggs return self.build_and_install(setup_script, setup_base) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 1158, in build_and_install self.run_setup(setup_script, setup_base, args) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/command/easy_install.py", line 1144, in run_setup run_setup(setup_script, args) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 253, in run_setup raise File "/home/docs/.pyenv/versions/3.7.3/lib/python3.7/contextlib.py", line 130, in __exit__ self.gen.throw(type, value, traceback) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 195, in setup_context yield File "/home/docs/.pyenv/versions/3.7.3/lib/python3.7/contextlib.py", line 130, in __exit__ self.gen.throw(type, value, traceback) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 166, in save_modules saved_exc.resume() File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 141, in resume six.reraise(type, exc, self._tb) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/_vendor/six.py", line 685, in reraise raise value.with_traceback(tb) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 154, in save_modules yield saved File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 195, in setup_context yield File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 250, in run_setup _execfile(setup_script, ns) File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/setuptools/sandbox.py", line 45, in _execfile exec(code, globals, locals) File "/tmp/easy_install-a3lhku77/numba-0.51.2/setup.py", line 354, in File "/tmp/easy_install-a3lhku77/numba-0.51.2/setup.py", line 87, in get_ext_modules ModuleNotFoundError: No module named 'numpy'