Read the Docs build information
Build id: 418321
Project: institute-for-disease-modeling-covasim
Version: latest
Commit: 15862eebc251897ea8fb3f3144984125eec39ebf
Date: 2020-09-11T00:12:25.813948Z
State: finished
Success: False


[rtd-command-info] start-time: 2020-09-11T00:12:28.733558Z, end-time: 2020-09-11T00:12:30.149586Z, duration: 1, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/InstituteforDiseaseModeling/covasim.git .
Cloning into '.'...

[rtd-command-info] start-time: 2020-09-11T00:12:30.861422Z, end-time: 2020-09-11T00:12:30.935341Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: checking out 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 15862ee Merge pull request #277 from lgeorge-idm/rtd/redirects

[rtd-command-info] start-time: 2020-09-11T00:12:31.044994Z, end-time: 2020-09-11T00:12:31.098658Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2020-09-11T00:12:32.339718Z, end-time: 2020-09-11T00:12:36.298823Z, duration: 3, exit-code: 0
python3.7 -mvirtualenv 
Using base prefix '/home/docs/.pyenv/versions/3.7.3'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2020-09-11T00:12:36.679734Z, end-time: 2020-09-11T00:12:37.364451Z, duration: 0, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip
Requirement already up-to-date: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (20.2.3)

[rtd-command-info] start-time: 2020-09-11T00:12:37.555416Z, end-time: 2020-09-11T00:12:45.799539Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir Pygments==2.3.1 setuptools==41.0.1 docutils==0.14 mock==1.0.1 pillow==5.4.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.8.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<1.1
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Building wheels for collected packages: mock, future
  Building wheel for mock (setup.py): started
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  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23754 sha256=894e32d0c0375979290f641f0d8aa7ddd6f3ba23739b5bae3804299db8010a5e
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Successfully built mock future
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, future, commonmark, snowballstemmer, imagesize, pytz, babel, sphinxcontrib-serializinghtml, sphinxcontrib-websupport, MarkupSafe, Jinja2, pyparsing, six, packaging, certifi, idna, urllib3, chardet, requests, sphinx, recommonmark, sphinx-rtd-theme, readthedocs-sphinx-ext
  Attempting uninstall: setuptools
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Successfully installed Jinja2-2.11.2 MarkupSafe-1.1.1 Pygments-2.3.1 alabaster-0.7.12 babel-2.8.0 certifi-2020.6.20 chardet-3.0.4 commonmark-0.8.1 docutils-0.14 future-0.18.2 idna-2.10 imagesize-1.2.0 mock-1.0.1 packaging-20.4 pillow-5.4.1 pyparsing-2.4.7 pytz-2020.1 readthedocs-sphinx-ext-1.0.4 recommonmark-0.5.0 requests-2.24.0 setuptools-41.0.1 six-1.15.0 snowballstemmer-2.0.0 sphinx-1.8.5 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.4 sphinxcontrib-websupport-1.2.4 urllib3-1.25.10

[rtd-command-info] start-time: 2020-09-11T00:12:45.956819Z, end-time: 2020-09-11T00:13:34.893041Z, duration: 48, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r requirements.txt
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Building wheels for collected packages: fire, psutil, memory-profiler, dill, mpld3, retrying, termcolor, et-xmlfile, tornado, pyrsistent, pandocfilters
  Building wheel for fire (setup.py): started
  Building wheel for fire (setup.py): finished with status 'done'
  Created wheel for fire: filename=fire-0.3.1-py2.py3-none-any.whl size=111005 sha256=bd9efc205eabfd42fcf0ece2b608174d4df83d1286b83a21e7784fa14f29b0de
  Stored in directory: /tmp/pip-ephem-wheel-cache-63p6cu07/wheels/95/38/e1/8b62337a8ecf5728bdc1017e828f253f7a9cf25db999861bec
  Building wheel for psutil (setup.py): started
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  Created wheel for psutil: filename=psutil-5.7.2-cp37-cp37m-linux_x86_64.whl size=283660 sha256=042398be1f9981a3669ba976f786b75655576160c434a0a428552af4ed057351
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  Building wheel for memory-profiler (setup.py): started
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  Created wheel for memory-profiler: filename=memory_profiler-0.57.0-py3-none-any.whl size=28993 sha256=a775e7b09359c5558b934a9ad9dade3d9b8ae5dc3ca83acc95285fe843ad4ee6
  Stored in directory: /tmp/pip-ephem-wheel-cache-63p6cu07/wheels/0c/84/4a/8afc0620ec149b2c0a4ed08b021e3a2dc7063fa08e1fcb40c8
  Building wheel for dill (setup.py): started
  Building wheel for dill (setup.py): finished with status 'done'
  Created wheel for dill: filename=dill-0.3.2-py3-none-any.whl size=78912 sha256=7fc679124eea0a773715d14b31a0bb1131fe7897d4c8a286714ac310a2f433e1
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  Created wheel for mpld3: filename=mpld3-0.5.1-py3-none-any.whl size=364063 sha256=d47ec9503dd3abb32890a7701351f21f33a8b469c7e10aed4ad4d3d693068b05
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  Building wheel for retrying (setup.py): started
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  Created wheel for retrying: filename=retrying-1.3.3-py3-none-any.whl size=11429 sha256=6e1c6ebf17d61bbb866302f9c2b4f400733b22c08f1e6acbf6b54b7228b8fe56
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  Created wheel for termcolor: filename=termcolor-1.1.0-py3-none-any.whl size=4830 sha256=4566c982d815ba7bb1dfd25842661d75b602cf314897a2fb1de0677b8f1491d5
  Stored in directory: /tmp/pip-ephem-wheel-cache-63p6cu07/wheels/3f/e3/ec/8a8336ff196023622fbcb36de0c5a5c218cbb24111d1d4c7f2
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  Created wheel for et-xmlfile: filename=et_xmlfile-1.0.1-py3-none-any.whl size=8917 sha256=57296b9d8f8e5a4c9ac6d30b51572bd3ada120e16eba4b7ff85bada39f5267d4
  Stored in directory: /tmp/pip-ephem-wheel-cache-63p6cu07/wheels/e2/bd/55/048b4fd505716c4c298f42ee02dffd9496bb6d212b266c7f31
  Building wheel for tornado (setup.py): started
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  Created wheel for tornado: filename=tornado-6.0.4-cp37-cp37m-linux_x86_64.whl size=428560 sha256=16dd4a6d19dbd6bbe11ac4fdded73a91de4314698cfab0e0c1884d2dca363725
  Stored in directory: /tmp/pip-ephem-wheel-cache-63p6cu07/wheels/7d/14/fa/d88fb5da77d813ea0ffca38a2ab2a052874e9e1142bad0b348
  Building wheel for pyrsistent (setup.py): started
  Building wheel for pyrsistent (setup.py): finished with status 'done'
  Created wheel for pyrsistent: filename=pyrsistent-0.16.0-cp37-cp37m-linux_x86_64.whl size=116012 sha256=8da0560d42941cf29dd42362901ed93f75613edcd8c50f4b56f64b2b8b4bc366
  Stored in directory: /tmp/pip-ephem-wheel-cache-63p6cu07/wheels/22/52/11/f0920f95c23ed7d2d0b05f2b7b2f4509e87a20cfe8ea43d987
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  Created wheel for pandocfilters: filename=pandocfilters-1.4.2-py3-none-any.whl size=7855 sha256=5ffcf9ade2160f553770a99319a361c985e536549b5fadc997c65629fd48da85
  Stored in directory: /tmp/pip-ephem-wheel-cache-63p6cu07/wheels/63/99/01/9fe785b86d1e091a6b2a61e06ddb3d8eb1bc9acae5933d4740
Successfully built fire psutil memory-profiler dill mpld3 retrying termcolor et-xmlfile tornado pyrsistent pandocfilters
Installing collected packages: numpy, python-dateutil, pandas, scipy, kiwisolver, pillow, cycler, matplotlib, patsy, statsmodels, llvmlite, numba, smmap, gitdb, gitpython, et-xmlfile, jdcal, openpyexcel, psutil, zipp, importlib-metadata, jsonpickle, memory-profiler, xlsxwriter, dill, xlrd, pickleshare, decorator, ipython-genutils, traitlets, ptyprocess, pexpect, backcall, parso, jedi, wcwidth, prompt-toolkit, ipython, line-profiler, jellyfish, sciris, mpld3, click, itsdangerous, werkzeug, flask, billiard, vine, amqp, kombu, celery, sqlalchemy, cachelib, flask-session, pyasn1, pyasn1-modules, attrs, pycparser, cffi, cryptography, service-identity, zope.interface, Automat, incremental, PyHamcrest, constantly, hyperlink, twisted, flask-login, redis, scirisweb, gunicorn, retrying, plotly, jupyter-core, pyrsistent, jsonschema, nbformat, tornado, Send2Trash, argon2-cffi, webencodings, bleach, defusedxml, mistune, jupyterlab-pygments, testpath, nest-asyncio, pyzmq, jupyter-client, async-generator, nbclient, entrypoints, pandocfilters, nbconvert, ipykernel, prometheus-client, terminado, notebook, widgetsnbextension, ipywidgets, termcolor, fire
  Attempting uninstall: pillow
    Found existing installation: Pillow 5.4.1
    Uninstalling Pillow-5.4.1:
      Successfully uninstalled Pillow-5.4.1
ERROR: After October 2020 you may experience errors when installing or updating packages. This is because pip will change the way that it resolves dependency conflicts.

We recommend you use --use-feature=2020-resolver to test your packages with the new resolver before it becomes the default.

jupyterlab-pygments 0.1.1 requires pygments<3,>=2.4.1, but you'll have pygments 2.3.1 which is incompatible.
nbconvert 6.0.1 requires pygments>=2.4.1, but you'll have pygments 2.3.1 which is incompatible.
Successfully installed Automat-20.2.0 PyHamcrest-2.0.2 Send2Trash-1.5.0 amqp-2.6.1 argon2-cffi-20.1.0 async-generator-1.10 attrs-20.2.0 backcall-0.2.0 billiard-3.6.3.0 bleach-3.1.5 cachelib-0.1.1 celery-4.4.7 cffi-1.14.2 click-7.1.2 constantly-15.1.0 cryptography-3.1 cycler-0.10.0 decorator-4.4.2 defusedxml-0.6.0 dill-0.3.2 entrypoints-0.3 et-xmlfile-1.0.1 fire-0.3.1 flask-1.1.2 flask-login-0.5.0 flask-session-0.3.2 gitdb-4.0.5 gitpython-3.1.8 gunicorn-20.0.4 hyperlink-20.0.1 importlib-metadata-1.7.0 incremental-17.5.0 ipykernel-5.3.4 ipython-7.18.1 ipython-genutils-0.2.0 ipywidgets-7.5.1 itsdangerous-1.1.0 jdcal-1.4.1 jedi-0.17.2 jellyfish-0.8.2 jsonpickle-1.4.1 jsonschema-3.2.0 jupyter-client-6.1.7 jupyter-core-4.6.3 jupyterlab-pygments-0.1.1 kiwisolver-1.2.0 kombu-4.6.11 line-profiler-3.0.2 llvmlite-0.31.0 matplotlib-3.3.1 memory-profiler-0.57.0 mistune-0.8.4 mpld3-0.5.1 nbclient-0.5.0 nbconvert-6.0.1 nbformat-5.0.7 nest-asyncio-1.4.0 notebook-6.1.4 numba-0.48.0 numpy-1.19.2 openpyexcel-2.5.14 pandas-1.1.2 pandocfilters-1.4.2 parso-0.7.1 patsy-0.5.1 pexpect-4.8.0 pickleshare-0.7.5 pillow-7.2.0 plotly-4.10.0 prometheus-client-0.8.0 prompt-toolkit-3.0.7 psutil-5.7.2 ptyprocess-0.6.0 pyasn1-0.4.8 pyasn1-modules-0.2.8 pycparser-2.20 pyrsistent-0.16.0 python-dateutil-2.8.1 pyzmq-19.0.2 redis-2.10.6 retrying-1.3.3 scipy-1.5.2 sciris-0.17.4 scirisweb-0.17.0 service-identity-18.1.0 smmap-3.0.4 sqlalchemy-1.3.19 statsmodels-0.12.0 termcolor-1.1.0 terminado-0.8.3 testpath-0.4.4 tornado-6.0.4 traitlets-5.0.4 twisted-20.3.0 vine-1.3.0 wcwidth-0.2.5 webencodings-0.5.1 werkzeug-1.0.1 widgetsnbextension-3.5.1 xlrd-1.2.0 xlsxwriter-1.3.3 zipp-3.1.0 zope.interface-5.1.0

[rtd-command-info] start-time: 2020-09-11T00:13:35.034750Z, end-time: 2020-09-11T00:13:40.438723Z, duration: 5, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
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Requirement already satisfied: importlib-metadata>=0.12; python_version < "3.8" in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from pytest->-r docs/requirements.txt (line 5)) (1.7.0)
Collecting more-itertools>=4.0.0
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Requirement already satisfied: MarkupSafe>=0.23 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from Jinja2>=2.3->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (1.1.1)
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Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=3.2.0->-r docs/requirements.txt (line 3)) (2020.6.20)
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Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages (from importlib-metadata>=0.12; python_version < "3.8"->pytest->-r docs/requirements.txt (line 5)) (3.1.0)
Installing collected packages: sphinxcontrib-qthelp, sphinxcontrib-htmlhelp, sphinxcontrib-applehelp, sphinxcontrib-devhelp, sphinxcontrib-jsmath, sphinx, sphinx-rtd-theme, pockets, sphinxcontrib-napoleon, plantweb, iniconfig, toml, py, pluggy, more-itertools, pytest
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.5
    Uninstalling Sphinx-1.8.5:
      Successfully uninstalled Sphinx-1.8.5
  Attempting uninstall: sphinx-rtd-theme
    Found existing installation: sphinx-rtd-theme 0.4.3
    Uninstalling sphinx-rtd-theme-0.4.3:
      Successfully uninstalled sphinx-rtd-theme-0.4.3
Successfully installed iniconfig-1.0.1 more-itertools-8.5.0 plantweb-1.2.1 pluggy-0.13.1 pockets-0.9.1 py-1.9.0 pytest-6.0.1 sphinx-3.2.1 sphinx-rtd-theme-0.5.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-1.0.3 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-qthelp-1.0.3 toml-0.10.1

[rtd-command-info] start-time: 2020-09-11T00:13:41.457655Z, end-time: 2020-09-11T00:13:43.291115Z, duration: 1, exit-code: 1
python ./setup.py install --force
running install
running bdist_egg
running egg_info
creating covasim.egg-info
writing covasim.egg-info/PKG-INFO
writing dependency_links to covasim.egg-info/dependency_links.txt
writing requirements to covasim.egg-info/requires.txt
writing top-level names to covasim.egg-info/top_level.txt
writing manifest file 'covasim.egg-info/SOURCES.txt'
reading manifest file 'covasim.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: manifest_maker: MANIFEST.in, line 3: 'recursive-include' expects <dir> <pattern1> <pattern2> ...

warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
warning: no previously-included files matching '__pycache__' found anywhere in distribution
writing manifest file 'covasim.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/covasim
copying covasim/run.py -> build/lib/covasim
copying covasim/people.py -> build/lib/covasim
copying covasim/analysis.py -> build/lib/covasim
copying covasim/parameters.py -> build/lib/covasim
copying covasim/misc.py -> build/lib/covasim
copying covasim/defaults.py -> build/lib/covasim
copying covasim/__init__.py -> build/lib/covasim
copying covasim/base.py -> build/lib/covasim
copying covasim/interventions.py -> build/lib/covasim
copying covasim/version.py -> build/lib/covasim
copying covasim/utils.py -> build/lib/covasim
copying covasim/population.py -> build/lib/covasim
copying covasim/requirements.py -> build/lib/covasim
copying covasim/sim.py -> build/lib/covasim
copying covasim/plotting.py -> build/lib/covasim
creating build/lib/covasim/data
copying covasim/data/loaders.py -> build/lib/covasim/data
copying covasim/data/household_size_data.py -> build/lib/covasim/data
copying covasim/data/__init__.py -> build/lib/covasim/data
copying covasim/data/state_age_data.py -> build/lib/covasim/data
copying covasim/data/country_age_data.py -> build/lib/covasim/data
creating build/lib/covasim/webapp
copying covasim/webapp/cova_app.py -> build/lib/covasim/webapp
copying covasim/webapp/__init__.py -> build/lib/covasim/webapp
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/run.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/people.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/analysis.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/parameters.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/misc.py -> build/bdist.linux-x86_64/egg/covasim
creating build/bdist.linux-x86_64/egg/covasim/data
copying build/lib/covasim/data/loaders.py -> build/bdist.linux-x86_64/egg/covasim/data
copying build/lib/covasim/data/household_size_data.py -> build/bdist.linux-x86_64/egg/covasim/data
copying build/lib/covasim/data/__init__.py -> build/bdist.linux-x86_64/egg/covasim/data
copying build/lib/covasim/data/state_age_data.py -> build/bdist.linux-x86_64/egg/covasim/data
copying build/lib/covasim/data/country_age_data.py -> build/bdist.linux-x86_64/egg/covasim/data
copying build/lib/covasim/defaults.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/__init__.py -> build/bdist.linux-x86_64/egg/covasim
creating build/bdist.linux-x86_64/egg/covasim/webapp
copying build/lib/covasim/webapp/cova_app.py -> build/bdist.linux-x86_64/egg/covasim/webapp
copying build/lib/covasim/webapp/__init__.py -> build/bdist.linux-x86_64/egg/covasim/webapp
copying build/lib/covasim/base.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/interventions.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/version.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/utils.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/population.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/requirements.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/sim.py -> build/bdist.linux-x86_64/egg/covasim
copying build/lib/covasim/plotting.py -> build/bdist.linux-x86_64/egg/covasim
byte-compiling build/bdist.linux-x86_64/egg/covasim/run.py to run.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/people.py to people.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/analysis.py to analysis.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/parameters.py to parameters.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/misc.py to misc.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/data/loaders.py to loaders.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/data/household_size_data.py to household_size_data.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/data/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/data/state_age_data.py to state_age_data.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/data/country_age_data.py to country_age_data.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/defaults.py to defaults.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/webapp/cova_app.py to cova_app.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/webapp/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/base.py to base.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/interventions.py to interventions.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/version.py to version.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/utils.py to utils.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/population.py to population.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/requirements.py to requirements.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/sim.py to sim.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/covasim/plotting.py to plotting.cpython-37.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying covasim.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying covasim.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying covasim.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying covasim.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying covasim.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
zip_safe flag not set; analyzing archive contents...
covasim.__pycache__.interventions.cpython-37: module MAY be using inspect.getouterframes
covasim.__pycache__.interventions.cpython-37: module MAY be using inspect.trace
covasim.__pycache__.misc.cpython-37: module references __file__
covasim.__pycache__.misc.cpython-37: module MAY be using inspect.getouterframes
covasim.webapp.__pycache__.cova_app.cpython-37: module references __file__
creating dist
creating 'dist/covasim-1.6.0-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing covasim-1.6.0-py3.7.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/covasim-1.6.0-py3.7.egg
Extracting covasim-1.6.0-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages
Adding covasim 1.6.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest/lib/python3.7/site-packages/covasim-1.6.0-py3.7.egg
Processing dependencies for covasim==1.6.0
error: Pygments 2.3.1 is installed but pygments>=2.4.1 is required by {'nbconvert'}