Read the Docs build information Build id: 4026500 Project: icb-anndata Version: 2460 Commit: d16a246cb011b5ed639fff7a9ddf72637dce06bc Date: 2026-05-19T18:06:32.410739Z State: finished Success: False [rtd-command-info] start-time: 2026-05-19T18:07:27.924753Z, end-time: 2026-05-19T18:07:28.751992Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2026-05-19T18:07:28.838443Z, end-time: 2026-05-19T18:07:30.006643Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/2460/head:external-2460 From https://github.com/scverse/anndata * [new ref] refs/pull/2460/head -> external-2460 * [new tag] 0.12.15 -> 0.12.15 [rtd-command-info] start-time: 2026-05-19T18:07:30.811608Z, end-time: 2026-05-19T18:07:30.887830Z, duration: 0, exit-code: 0 git checkout --force d16a246cb011b5ed639fff7a9ddf72637dce06bc Note: switching to 'd16a246cb011b5ed639fff7a9ddf72637dce06bc'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at d16a246 Fix raw X when leaving backed mode [rtd-command-info] start-time: 2026-05-19T18:07:30.972435Z, end-time: 2026-05-19T18:07:31.016518Z, duration: 0, exit-code: 0 cat .readthedocs.yml # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 build: os: ubuntu-24.04 tools: python: "3.14" jobs: post_checkout: # unshallow so version can be derived from tag - git fetch --unshallow || true create_environment: - asdf plugin add uv - asdf install uv latest - asdf global uv latest pre_build: # run towncrier to preview the next version’s release notes - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true build: html: - uvx hatch run docs:build - mv docs/_build $READTHEDOCS_OUTPUT submodules: include: - "docs/tutorials/notebooks" recursive: true [rtd-command-info] start-time: 2026-05-19T18:07:31.158505Z, end-time: 2026-05-19T18:07:31.231917Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2026-05-19T18:07:31.322200Z, end-time: 2026-05-19T18:07:32.202218Z, duration: 0, exit-code: 0 git submodule update --init --force --recursive -- docs/tutorials/notebooks Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks' Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/tutorials/notebooks'... Submodule path 'docs/tutorials/notebooks': checked out '5656b69092a9fe1fac1616a1139299fb110f04d2' [rtd-command-info] start-time: 2026-05-19T18:07:32.281834Z, end-time: 2026-05-19T18:07:34.198552Z, duration: 1, exit-code: 0 git fetch --unshallow || true From https://github.com/scverse/anndata * [new tag] 0.10.0 -> 0.10.0 * [new tag] 0.10.0.dev0 -> 0.10.0.dev0 * [new tag] 0.10.0rc1 -> 0.10.0rc1 * [new tag] 0.11.0 -> 0.11.0 * [new tag] 0.11.0.dev0 -> 0.11.0.dev0 * [new tag] 0.11.0rc1 -> 0.11.0rc1 * [new tag] 0.11.0rc2 -> 0.11.0rc2 * [new tag] 0.11.0rc3 -> 0.11.0rc3 * [new tag] 0.12.0 -> 0.12.0 * [new tag] 0.12.0rc1 -> 0.12.0rc1 * [new tag] 0.12.0rc2 -> 0.12.0rc2 * [new tag] 0.12.0rc3 -> 0.12.0rc3 * [new tag] 0.12.0rc4 -> 0.12.0rc4 * [new tag] 0.3 -> 0.3 * [new tag] 0.3.0.1 -> 0.3.0.1 * [new tag] 0.3.0.3 -> 0.3.0.3 * [new tag] 0.3.1 -> 0.3.1 * [new tag] 0.3.2 -> 0.3.2 * [new tag] 0.3.3 -> 0.3.3 * [new tag] 0.3.4 -> 0.3.4 * [new tag] 0.4.1 -> 0.4.1 * [new tag] 0.4.2 -> 0.4.2 * [new tag] 0.4.3 -> 0.4.3 * [new tag] 0.4.4 -> 0.4.4 * [new tag] 0.5 -> 0.5 * [new tag] 0.5.1 -> 0.5.1 * [new tag] 0.5.10 -> 0.5.10 * [new tag] 0.5.2 -> 0.5.2 * [new tag] 0.5.3 -> 0.5.3 * [new tag] 0.5.4 -> 0.5.4 * [new tag] 0.5.5 -> 0.5.5 * [new tag] 0.5.6 -> 0.5.6 * [new tag] 0.5.7 -> 0.5.7 * [new tag] 0.5.8 -> 0.5.8 * [new tag] 0.5.9 -> 0.5.9 * [new tag] 0.6 -> 0.6 * [new tag] 0.6.1 -> 0.6.1 * [new tag] 0.6.10 -> 0.6.10 * [new tag] 0.6.11 -> 0.6.11 * [new tag] 0.6.12 -> 0.6.12 * [new tag] 0.6.13 -> 0.6.13 * [new tag] 0.6.14 -> 0.6.14 * [new tag] 0.6.15 -> 0.6.15 * [new tag] 0.6.17 -> 0.6.17 * [new tag] 0.6.18 -> 0.6.18 * [new tag] 0.6.19 -> 0.6.19 * [new tag] 0.6.2 -> 0.6.2 * [new tag] 0.6.20 -> 0.6.20 * [new tag] 0.6.21 -> 0.6.21 * [new tag] 0.6.22 -> 0.6.22 * [new tag] 0.6.22.post1 -> 0.6.22.post1 * [new tag] 0.6.22rc1 -> 0.6.22rc1 * [new tag] 0.6.3 -> 0.6.3 * [new tag] 0.6.4 -> 0.6.4 * [new tag] 0.6.5 -> 0.6.5 * [new tag] 0.6.6 -> 0.6.6 * [new tag] 0.6.7 -> 0.6.7 * [new tag] 0.6.8 -> 0.6.8 * [new tag] 0.6.9 -> 0.6.9 * [new tag] 0.7 -> 0.7 * [new tag] 0.7.1 -> 0.7.1 * [new tag] 0.7.2 -> 0.7.2 * [new tag] 0.7.2a1 -> 0.7.2a1 * [new tag] 0.7.3 -> 0.7.3 * [new tag] 0.7.4 -> 0.7.4 * [new tag] 0.7.5 -> 0.7.5 * [new tag] 0.7.6 -> 0.7.6 * [new tag] 0.7.7 -> 0.7.7 * [new tag] 0.7.8 -> 0.7.8 * [new tag] 0.7rc1 -> 0.7rc1 * [new tag] 0.7rc2 -> 0.7rc2 * [new tag] 0.8.0 -> 0.8.0 * [new tag] 0.8.0.dev0 -> 0.8.0.dev0 * [new tag] 0.8.0rc1 -> 0.8.0rc1 * [new tag] 0.9.0.dev0 -> 0.9.0.dev0 * [new tag] 0.9.0rc1 -> 0.9.0rc1 [rtd-command-info] start-time: 2026-05-19T18:07:39.605807Z, end-time: 2026-05-19T18:07:39.663790Z, duration: 0, exit-code: 0 asdf global python 3.14.0 [rtd-command-info] start-time: 2026-05-19T18:07:40.020645Z, end-time: 2026-05-19T18:07:41.173731Z, duration: 1, exit-code: 0 asdf plugin add uv updating plugin repository...From https://github.com/asdf-vm/asdf-plugins 8e311ee..c0369a1 master -> origin/master * [new branch] dependabot/github_actions/actions/checkout-6 -> origin/dependabot/github_actions/actions/checkout-6 * [new branch] dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 -> origin/dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 * [new branch] dependabot/github_actions/asdf-vm/actions-4 -> origin/dependabot/github_actions/asdf-vm/actions-4 HEAD is now at c0369a1 feat: add yasm plugin (#1087) [rtd-command-info] start-time: 2026-05-19T18:07:41.260957Z, end-time: 2026-05-19T18:07:42.319507Z, duration: 1, exit-code: 0 asdf install uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.11.15 * Downloading uv release 0.11.15... uv 0.11.15 installation was successful! [rtd-command-info] start-time: 2026-05-19T18:07:42.501098Z, end-time: 2026-05-19T18:07:42.643683Z, duration: 0, exit-code: 0 asdf global uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.11.15 [rtd-command-info] start-time: 2026-05-19T18:07:42.878643Z, end-time: 2026-05-19T18:07:49.237365Z, duration: 6, exit-code: 0 ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true Downloading pygments (1.2MiB) Downloading virtualenv (7.2MiB) Downloading cryptography (4.5MiB) Downloading uv (23.3MiB) Downloaded uv Downloaded cryptography Downloaded virtualenv Downloaded pygments Installed 41 packages in 19ms Creating environment: docs Installing project in development mode Checking dependencies Syncing dependencies Loading template... Finding news fragments... Rendering news fragments... Writing to newsfile... Staging newsfile... Keeping the following files: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2309.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/1707.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2370.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2372.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/1707.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2379.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/623.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2326.perf.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2071.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2338.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2367.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2439.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/1927.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2436.chore.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2087.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2133.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/release-notes/2406.fix.md Done! [rtd-command-info] start-time: 2026-05-19T18:07:49.321061Z, end-time: 2026-05-19T18:08:23.206566Z, duration: 33, exit-code: 1 uvx hatch run docs:build Running Sphinx v9.1.0 loading translations [en]... done matplotlib is not installed, social cards will not be generated making output directory... done myst v5.1.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'html_image', 'colon_fence', 'dollarmath'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, strikethrough_single_tilde=False, colon_fence_exact_match=False, suppress_warnings=[], highlight_code_blocks=True) myst-nb v1.4.0: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, eval_name_regex='^[a-zA-Z_][a-zA-Z0-9_]*$', execution_mode='off', execution_cache_path='', execution_excludepatterns=(), execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, scroll_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False) Using jupyter-cache at: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/_build/.jupyter_cache loading intersphinx inventory 'array_api' from https://array-api.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'cupy' from https://docs.cupy.dev/en/stable/objects.inv ... loading intersphinx inventory 'awkward' from https://awkward-array.org/doc/stable/objects.inv ... loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... loading intersphinx inventory 'fsspec' from https://filesystem-spec.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'h5py' from https://docs.h5py.org/en/latest/objects.inv ... loading intersphinx inventory 'hdf5plugin' from https://hdf5plugin.readthedocs.io/en/latest/objects.inv ... loading intersphinx inventory 'kvikio' from https://docs.rapids.ai/api/kvikio/stable/objects.inv ... loading intersphinx inventory 'loompy' from https://linnarssonlab.org/loompy/objects.inv ... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'obstore' from https://developmentseed.org/obstore/latest/objects.inv ... loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... loading intersphinx inventory 'sklearn' from https://scikit-learn.org/stable/objects.inv ... loading intersphinx inventory 'xarray' from https://docs.xarray.dev/en/stable/objects.inv ... loading intersphinx inventory 'zarrs' from https://zarrs-python.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'zarr' from https://zarr.readthedocs.io/en/stable/objects.inv ... [autosummary] generating autosummary for: _key_contributors.rst, accessors.rst, api.md, benchmark-read-write.ipynb, benchmarks.md, concatenation.rst, contributing.md, fileformat-prose.md, index.md, interoperability.md, ..., tutorials/notebooks/anncollection-annloader.ipynb, tutorials/notebooks/anncollection.ipynb, tutorials/notebooks/anndata_dask_array.ipynb, tutorials/notebooks/annloader.ipynb, tutorials/notebooks/awkward-arrays.ipynb, tutorials/notebooks/getting-started.ipynb, tutorials/notebooks/read_lazy.ipynb, tutorials/notebooks/{read,write}_dispatched.ipynb, tutorials/zarr-v3.md, typing.md /home/docs/.local/share/hatch/env/virtual/anndata/VjG3T1OS/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py:697: FutureWarning: Importing ExtensionNamespace from `types` is deprecated. Please use scverse_misc instead. return getattr(mod, name_parts[-1]), mod, modname [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.unwriteable.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.write_csvs.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.write_h5ad.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.write_loom.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.write_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.ImplicitModificationWarning.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.abc.CSCDataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.abc.CSRDataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.acc.AdAcc.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.io.read_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.io.sparse_dataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.io.write_elem.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.io.write_h5ad.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.io.write_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.register_anndata_namespace.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.settings.override.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.settings.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.ExtensionNamespace.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.SupportsArrayApi.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.T.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.chunk_X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.chunked_X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.copy.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.filename.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.is_view.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.isbacked.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.isview.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.layers.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.experimental.AnnCollection.obsm.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.experimental.AnnCollection.shape.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.experimental.AnnCollection.to_adata.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.SupportsArrayApi.__array_namespace__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.SupportsArrayApi.__dlpack__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.SupportsArrayApi.__dlpack_device__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.SupportsArrayApi.device.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.SupportsArrayApi.shape.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.SupportsArrayApi.size.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.types.SupportsArrayApi.to_device.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 23 source files that are out of date updating environment: [new config] 136 added, 0 changed, 0 removed /home/docs/.asdf/installs/python/3.14.0/lib/python3.14/importlib/__init__.py:88: ZarrUserWarning: pytest not installed, skipping test suite return _bootstrap._gcd_import(name[level:], package, level) /home/docs/.asdf/installs/python/3.14.0/lib/python3.14/importlib/__init__.py:88: ZarrUserWarning: pytest not installed, skipping test suite return _bootstrap._gcd_import(name[level:], package, level) reading sources... [ 1%] _key_contributors reading sources... [ 1%] accessors reading sources... [ 2%] api /home/docs/.local/share/hatch/env/virtual/anndata/VjG3T1OS/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py:697: FutureWarning: Importing ExtensionNamespace from `types` is deprecated. Please use scverse_misc instead. return getattr(mod, name_parts[-1]), mod, modname /home/docs/.local/share/hatch/env/virtual/anndata/VjG3T1OS/docs/lib/python3.14/site-packages/sphinx/util/inspect.py:461: FutureWarning: Importing ExtensionNamespace from `types` is deprecated. Please use scverse_misc instead. return getattr(obj, name, *defargs) reading sources... [ 3%] benchmark-read-write reading sources... [ 4%] benchmarks reading sources... [ 4%] concatenation reading sources... [ 5%] contributing reading sources... [ 6%] fileformat-prose reading sources... [ 7%] generated/anndata.AnnData reading sources... [ 7%] generated/anndata.AnnData.T reading sources... [ 8%] generated/anndata.AnnData.X reading sources... [ 9%] generated/anndata.AnnData.chunk_X reading sources... [ 10%] generated/anndata.AnnData.chunked_X reading sources... [ 10%] generated/anndata.AnnData.copy reading sources... [ 11%] generated/anndata.AnnData.filename reading sources... [ 12%] generated/anndata.AnnData.is_view reading sources... [ 12%] generated/anndata.AnnData.isbacked reading sources... [ 13%] generated/anndata.AnnData.isview reading sources... [ 14%] generated/anndata.AnnData.layers reading sources... [ 15%] generated/anndata.AnnData.n_obs reading sources... [ 15%] generated/anndata.AnnData.n_vars reading sources... [ 16%] generated/anndata.AnnData.obs reading sources... [ 17%] generated/anndata.AnnData.obs_keys reading sources... [ 18%] generated/anndata.AnnData.obs_names reading sources... [ 18%] generated/anndata.AnnData.obs_names_make_unique reading sources... [ 19%] generated/anndata.AnnData.obs_vector reading sources... 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Please use scverse_misc instead. return getattr(obj, name, *defargs) /home/docs/.local/share/hatch/env/virtual/anndata/VjG3T1OS/docs/lib/python3.14/site-packages/scanpydoc/rtd_github_links/__init__.py:154: FutureWarning: Importing ExtensionNamespace from `types` is deprecated. Please use scverse_misc instead. thing = getattr(mod if obj is None else obj, attr_name) reading sources... [ 84%] generated/anndata.types.SupportsArrayApi reading sources... [ 85%] generated/anndata.types.SupportsArrayApi.__array_namespace__ reading sources... [ 85%] generated/anndata.types.SupportsArrayApi.__dlpack__ reading sources... [ 86%] generated/anndata.types.SupportsArrayApi.__dlpack_device__ reading sources... [ 87%] generated/anndata.types.SupportsArrayApi.device reading sources... [ 88%] generated/anndata.types.SupportsArrayApi.shape reading sources... [ 88%] generated/anndata.types.SupportsArrayApi.size reading sources... [ 89%] generated/anndata.types.SupportsArrayApi.to_device reading sources... 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[100%] typing looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.unwriteable.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.unwriteable /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.write_csvs.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.write_csvs /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.write_h5ad.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.write_h5ad /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.write_loom.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.write_loom /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/generated/anndata.AnnData.write_zarr.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.write_zarr done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/_build/html/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/_build/html/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/_build/html/_static/documentation_options.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2460/docs/_build/html/_static/copybutton.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 1%] _key_contributors writing output... [ 1%] accessors writing output... [ 2%] api writing output... [ 3%] benchmark-read-write writing output... [ 4%] benchmarks writing output... [ 4%] concatenation writing output... [ 5%] contributing writing output... 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