Read the Docs build information Build id: 4024818 Project: icb-anndata Version: 2446 Commit: 8bbe407670f536ce40756a099c2bfbd284e0dd1b Date: 2026-05-19T09:25:02.964786Z State: finished Success: False [rtd-command-info] start-time: 2026-05-19T09:25:03.707355Z, end-time: 2026-05-19T09:25:04.437910Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2026-05-19T09:25:04.712574Z, end-time: 2026-05-19T09:25:05.761160Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/2446/head:external-2446 From https://github.com/scverse/anndata * [new ref] refs/pull/2446/head -> external-2446 * [new tag] 0.12.15 -> 0.12.15 [rtd-command-info] start-time: 2026-05-19T09:25:06.717042Z, end-time: 2026-05-19T09:25:06.779645Z, duration: 0, exit-code: 0 git checkout --force 8bbe407670f536ce40756a099c2bfbd284e0dd1b Note: switching to '8bbe407670f536ce40756a099c2bfbd284e0dd1b'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 8bbe407 Merge branch 'main' into ig/scverse_misc_settings [rtd-command-info] start-time: 2026-05-19T09:25:06.859980Z, end-time: 2026-05-19T09:25:06.901069Z, duration: 0, exit-code: 0 cat .readthedocs.yml # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 build: os: ubuntu-24.04 tools: python: "3.14" jobs: post_checkout: # unshallow so version can be derived from tag - git fetch --unshallow || true create_environment: - asdf plugin add uv - asdf install uv latest - asdf global uv latest pre_build: # run towncrier to preview the next version’s release notes - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true build: html: - uvx hatch run docs:build - mv docs/_build $READTHEDOCS_OUTPUT submodules: include: - "docs/tutorials/notebooks" recursive: true [rtd-command-info] start-time: 2026-05-19T09:25:07.032822Z, end-time: 2026-05-19T09:25:07.105113Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2026-05-19T09:25:07.187014Z, end-time: 2026-05-19T09:25:07.930894Z, duration: 0, exit-code: 0 git submodule update --init --force --recursive -- docs/tutorials/notebooks Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks' Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/2446/docs/tutorials/notebooks'... Submodule path 'docs/tutorials/notebooks': checked out '5656b69092a9fe1fac1616a1139299fb110f04d2' [rtd-command-info] start-time: 2026-05-19T09:25:08.010577Z, end-time: 2026-05-19T09:25:09.444534Z, duration: 1, exit-code: 0 git fetch --unshallow || true From https://github.com/scverse/anndata * [new tag] 0.10.0 -> 0.10.0 * [new tag] 0.10.0.dev0 -> 0.10.0.dev0 * [new tag] 0.10.0rc1 -> 0.10.0rc1 * [new tag] 0.11.0 -> 0.11.0 * [new tag] 0.11.0.dev0 -> 0.11.0.dev0 * [new tag] 0.11.0rc1 -> 0.11.0rc1 * [new tag] 0.11.0rc2 -> 0.11.0rc2 * [new tag] 0.11.0rc3 -> 0.11.0rc3 * [new tag] 0.12.0 -> 0.12.0 * [new tag] 0.12.0rc1 -> 0.12.0rc1 * [new tag] 0.12.0rc2 -> 0.12.0rc2 * [new tag] 0.12.0rc3 -> 0.12.0rc3 * [new tag] 0.12.0rc4 -> 0.12.0rc4 * [new tag] 0.3 -> 0.3 * [new tag] 0.3.0.1 -> 0.3.0.1 * [new tag] 0.3.0.3 -> 0.3.0.3 * [new tag] 0.3.1 -> 0.3.1 * [new tag] 0.3.2 -> 0.3.2 * [new tag] 0.3.3 -> 0.3.3 * [new tag] 0.3.4 -> 0.3.4 * [new tag] 0.4.1 -> 0.4.1 * [new tag] 0.4.2 -> 0.4.2 * [new tag] 0.4.3 -> 0.4.3 * [new tag] 0.4.4 -> 0.4.4 * [new tag] 0.5 -> 0.5 * [new tag] 0.5.1 -> 0.5.1 * [new tag] 0.5.10 -> 0.5.10 * [new tag] 0.5.2 -> 0.5.2 * [new tag] 0.5.3 -> 0.5.3 * [new tag] 0.5.4 -> 0.5.4 * [new tag] 0.5.5 -> 0.5.5 * [new tag] 0.5.6 -> 0.5.6 * [new tag] 0.5.7 -> 0.5.7 * [new tag] 0.5.8 -> 0.5.8 * [new tag] 0.5.9 -> 0.5.9 * [new tag] 0.6 -> 0.6 * [new tag] 0.6.1 -> 0.6.1 * [new tag] 0.6.10 -> 0.6.10 * [new tag] 0.6.11 -> 0.6.11 * [new tag] 0.6.12 -> 0.6.12 * [new tag] 0.6.13 -> 0.6.13 * [new tag] 0.6.14 -> 0.6.14 * [new tag] 0.6.15 -> 0.6.15 * [new tag] 0.6.17 -> 0.6.17 * [new tag] 0.6.18 -> 0.6.18 * [new tag] 0.6.19 -> 0.6.19 * [new tag] 0.6.2 -> 0.6.2 * [new tag] 0.6.20 -> 0.6.20 * [new tag] 0.6.21 -> 0.6.21 * [new tag] 0.6.22 -> 0.6.22 * [new tag] 0.6.22.post1 -> 0.6.22.post1 * [new tag] 0.6.22rc1 -> 0.6.22rc1 * [new tag] 0.6.3 -> 0.6.3 * [new tag] 0.6.4 -> 0.6.4 * [new tag] 0.6.5 -> 0.6.5 * [new tag] 0.6.6 -> 0.6.6 * [new tag] 0.6.7 -> 0.6.7 * [new tag] 0.6.8 -> 0.6.8 * [new tag] 0.6.9 -> 0.6.9 * [new tag] 0.7 -> 0.7 * [new tag] 0.7.1 -> 0.7.1 * [new tag] 0.7.2 -> 0.7.2 * [new tag] 0.7.2a1 -> 0.7.2a1 * [new tag] 0.7.3 -> 0.7.3 * [new tag] 0.7.4 -> 0.7.4 * [new tag] 0.7.5 -> 0.7.5 * [new tag] 0.7.6 -> 0.7.6 * [new tag] 0.7.7 -> 0.7.7 * [new tag] 0.7.8 -> 0.7.8 * [new tag] 0.7rc1 -> 0.7rc1 * [new tag] 0.7rc2 -> 0.7rc2 * [new tag] 0.8.0 -> 0.8.0 * [new tag] 0.8.0.dev0 -> 0.8.0.dev0 * [new tag] 0.8.0rc1 -> 0.8.0rc1 * [new tag] 0.9.0.dev0 -> 0.9.0.dev0 * [new tag] 0.9.0rc1 -> 0.9.0rc1 [rtd-command-info] start-time: 2026-05-19T09:25:14.377085Z, end-time: 2026-05-19T09:25:14.430755Z, duration: 0, exit-code: 0 asdf global python 3.14.0 [rtd-command-info] start-time: 2026-05-19T09:25:14.807553Z, end-time: 2026-05-19T09:25:15.897207Z, duration: 1, exit-code: 0 asdf plugin add uv updating plugin repository...From https://github.com/asdf-vm/asdf-plugins 8e311ee..c0369a1 master -> origin/master * [new branch] dependabot/github_actions/actions/checkout-6 -> origin/dependabot/github_actions/actions/checkout-6 * [new branch] dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 -> origin/dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 * [new branch] dependabot/github_actions/asdf-vm/actions-4 -> origin/dependabot/github_actions/asdf-vm/actions-4 HEAD is now at c0369a1 feat: add yasm plugin (#1087) [rtd-command-info] start-time: 2026-05-19T09:25:15.985736Z, end-time: 2026-05-19T09:25:17.144406Z, duration: 1, exit-code: 0 asdf install uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.11.15 * Downloading uv release 0.11.15... uv 0.11.15 installation was successful! [rtd-command-info] start-time: 2026-05-19T09:25:17.223816Z, end-time: 2026-05-19T09:25:17.329884Z, duration: 0, exit-code: 0 asdf global uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.11.15 [rtd-command-info] start-time: 2026-05-19T09:25:17.469096Z, end-time: 2026-05-19T09:25:20.510056Z, duration: 3, exit-code: 0 ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true Downloading uv (23.3MiB) Downloading cryptography (4.5MiB) Downloading pygments (1.2MiB) Downloading virtualenv (7.2MiB) Downloaded virtualenv Downloaded cryptography Downloaded uv Downloaded pygments Installed 41 packages in 21ms Creating environment: docs Installing project in development mode × Failed to download and build `scverse-misc @ │ git+https://github.com/scverse/scverse-misc@pa/reset` ├─▶ Git operation failed ├─▶ failed to clone into: /home/docs/.cache/uv/git-v0/db/4ba753ba29470b21 ├─▶ failed to fetch branch or tag `pa/reset` ╰─▶ process didn't exit successfully: `/usr/bin/git fetch --force --update-head-ok 'https://github.com/scverse/scverse-misc' '+refs/tags/pa/reset:refs/remotes/origin/tags/pa/reset'` (exit status: 128) --- stderr fatal: couldn't find remote ref refs/tags/pa/reset [rtd-command-info] start-time: 2026-05-19T09:25:20.588711Z, end-time: 2026-05-19T09:25:21.751039Z, duration: 1, exit-code: 1 uvx hatch run docs:build Checking dependencies Syncing dependencies × Failed to download and build `scverse-misc @ │ git+https://github.com/scverse/scverse-misc@pa/reset` ├─▶ Git operation failed ├─▶ failed to fetch into: /home/docs/.cache/uv/git-v0/db/4ba753ba29470b21 ├─▶ failed to fetch branch or tag `pa/reset` ╰─▶ process didn't exit successfully: `/usr/bin/git fetch --force --update-head-ok 'https://github.com/scverse/scverse-misc' '+refs/tags/pa/reset:refs/remotes/origin/tags/pa/reset'` (exit status: 128) --- stderr fatal: couldn't find remote ref refs/tags/pa/reset