Read the Docs build information Build id: 4018015 Project: icb-anndata Version: latest Commit: e5f2c7c74b883efccf56325fbf1d19f23951e637 Date: 2026-05-15T15:00:15.163508Z State: finished Success: True [rtd-command-info] start-time: 2026-05-15T15:00:15.937528Z, end-time: 2026-05-15T15:00:16.569295Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/scverse/anndata.git . Cloning into '.'... [rtd-command-info] start-time: 2026-05-15T15:00:16.658256Z, end-time: 2026-05-15T15:00:17.190471Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 HEAD From https://github.com/scverse/anndata * branch HEAD -> FETCH_HEAD [rtd-command-info] start-time: 2026-05-15T15:00:17.882299Z, end-time: 2026-05-15T15:00:17.920340Z, duration: 0, exit-code: 0 cat .readthedocs.yml # https://docs.readthedocs.io/en/stable/config-file/v2.html version: 2 build: os: ubuntu-24.04 tools: python: "3.14" jobs: post_checkout: # unshallow so version can be derived from tag - git fetch --unshallow || true create_environment: - asdf plugin add uv - asdf install uv latest - asdf global uv latest pre_build: # run towncrier to preview the next version’s release notes - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true build: html: - uvx hatch run docs:build - mv docs/_build $READTHEDOCS_OUTPUT submodules: include: - "docs/tutorials/notebooks" recursive: true [rtd-command-info] start-time: 2026-05-15T15:00:18.043092Z, end-time: 2026-05-15T15:00:18.150293Z, duration: 0, exit-code: 0 git submodule sync [rtd-command-info] start-time: 2026-05-15T15:00:18.236617Z, end-time: 2026-05-15T15:00:19.115582Z, duration: 0, exit-code: 0 git submodule update --init --force --recursive -- docs/tutorials/notebooks Submodule 'docs/tutorials/notebooks' (https://github.com/scverse/anndata-tutorials) registered for path 'docs/tutorials/notebooks' Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/tutorials/notebooks'... Submodule path 'docs/tutorials/notebooks': checked out '5656b69092a9fe1fac1616a1139299fb110f04d2' [rtd-command-info] start-time: 2026-05-15T15:00:19.200786Z, end-time: 2026-05-15T15:00:20.630954Z, duration: 1, exit-code: 0 git fetch --unshallow || true From https://github.com/scverse/anndata * [new tag] 0.10.0 -> 0.10.0 * [new tag] 0.10.0.dev0 -> 0.10.0.dev0 * [new tag] 0.10.0rc1 -> 0.10.0rc1 * [new tag] 0.11.0 -> 0.11.0 * [new tag] 0.11.0.dev0 -> 0.11.0.dev0 * [new tag] 0.11.0rc1 -> 0.11.0rc1 * [new tag] 0.11.0rc2 -> 0.11.0rc2 * [new tag] 0.11.0rc3 -> 0.11.0rc3 * [new tag] 0.12.0 -> 0.12.0 * [new tag] 0.12.0rc1 -> 0.12.0rc1 * [new tag] 0.12.0rc2 -> 0.12.0rc2 * [new tag] 0.12.0rc3 -> 0.12.0rc3 * [new tag] 0.12.0rc4 -> 0.12.0rc4 * [new tag] 0.3 -> 0.3 * [new tag] 0.3.0.1 -> 0.3.0.1 * [new tag] 0.3.0.3 -> 0.3.0.3 * [new tag] 0.3.1 -> 0.3.1 * [new tag] 0.3.2 -> 0.3.2 * [new tag] 0.3.3 -> 0.3.3 * [new tag] 0.3.4 -> 0.3.4 * [new tag] 0.4.1 -> 0.4.1 * [new tag] 0.4.2 -> 0.4.2 * [new tag] 0.4.3 -> 0.4.3 * [new tag] 0.4.4 -> 0.4.4 * [new tag] 0.5 -> 0.5 * [new tag] 0.5.1 -> 0.5.1 * [new tag] 0.5.10 -> 0.5.10 * [new tag] 0.5.2 -> 0.5.2 * [new tag] 0.5.3 -> 0.5.3 * [new tag] 0.5.4 -> 0.5.4 * [new tag] 0.5.5 -> 0.5.5 * [new tag] 0.5.6 -> 0.5.6 * [new tag] 0.5.7 -> 0.5.7 * [new tag] 0.5.8 -> 0.5.8 * [new tag] 0.5.9 -> 0.5.9 * [new tag] 0.6 -> 0.6 * [new tag] 0.6.1 -> 0.6.1 * [new tag] 0.6.10 -> 0.6.10 * [new tag] 0.6.11 -> 0.6.11 * [new tag] 0.6.12 -> 0.6.12 * [new tag] 0.6.13 -> 0.6.13 * [new tag] 0.6.14 -> 0.6.14 * [new tag] 0.6.15 -> 0.6.15 * [new tag] 0.6.17 -> 0.6.17 * [new tag] 0.6.18 -> 0.6.18 * [new tag] 0.6.19 -> 0.6.19 * [new tag] 0.6.2 -> 0.6.2 * [new tag] 0.6.20 -> 0.6.20 * [new tag] 0.6.21 -> 0.6.21 * [new tag] 0.6.22 -> 0.6.22 * [new tag] 0.6.22.post1 -> 0.6.22.post1 * [new tag] 0.6.22rc1 -> 0.6.22rc1 * [new tag] 0.6.3 -> 0.6.3 * [new tag] 0.6.4 -> 0.6.4 * [new tag] 0.6.5 -> 0.6.5 * [new tag] 0.6.6 -> 0.6.6 * [new tag] 0.6.7 -> 0.6.7 * [new tag] 0.6.8 -> 0.6.8 * [new tag] 0.6.9 -> 0.6.9 * [new tag] 0.7 -> 0.7 * [new tag] 0.7.1 -> 0.7.1 * [new tag] 0.7.2 -> 0.7.2 * [new tag] 0.7.2a1 -> 0.7.2a1 * [new tag] 0.7.3 -> 0.7.3 * [new tag] 0.7.4 -> 0.7.4 * [new tag] 0.7.5 -> 0.7.5 * [new tag] 0.7.6 -> 0.7.6 * [new tag] 0.7.7 -> 0.7.7 * [new tag] 0.7.8 -> 0.7.8 * [new tag] 0.7rc1 -> 0.7rc1 * [new tag] 0.7rc2 -> 0.7rc2 * [new tag] 0.8.0 -> 0.8.0 * [new tag] 0.8.0.dev0 -> 0.8.0.dev0 * [new tag] 0.8.0rc1 -> 0.8.0rc1 * [new tag] 0.9.0.dev0 -> 0.9.0.dev0 * [new tag] 0.9.0rc1 -> 0.9.0rc1 [rtd-command-info] start-time: 2026-05-15T15:00:25.862898Z, end-time: 2026-05-15T15:00:25.919803Z, duration: 0, exit-code: 0 asdf global python 3.14.0 [rtd-command-info] start-time: 2026-05-15T15:00:26.633293Z, end-time: 2026-05-15T15:00:28.377863Z, duration: 1, exit-code: 0 asdf plugin add uv updating plugin repository...From https://github.com/asdf-vm/asdf-plugins 8e311ee..c0369a1 master -> origin/master * [new branch] dependabot/github_actions/actions/checkout-6 -> origin/dependabot/github_actions/actions/checkout-6 * [new branch] dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 -> origin/dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 * [new branch] dependabot/github_actions/asdf-vm/actions-4 -> origin/dependabot/github_actions/asdf-vm/actions-4 HEAD is now at c0369a1 feat: add yasm plugin (#1087) [rtd-command-info] start-time: 2026-05-15T15:00:28.468294Z, end-time: 2026-05-15T15:00:29.676232Z, duration: 1, exit-code: 0 asdf install uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.11.14 * Downloading uv release 0.11.14... uv 0.11.14 installation was successful! [rtd-command-info] start-time: 2026-05-15T15:00:29.756309Z, end-time: 2026-05-15T15:00:29.873769Z, duration: 0, exit-code: 0 asdf global uv latest redirect url: https://github.com/astral-sh/uv/releases/tag/0.11.14 [rtd-command-info] start-time: 2026-05-15T15:00:30.051693Z, end-time: 2026-05-15T15:00:35.624252Z, duration: 5, exit-code: 0 ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run docs:towncrier build --keep || true Downloading pygments (1.2MiB) Downloading cryptography (4.5MiB) Downloading virtualenv (7.2MiB) Downloading uv (23.6MiB) Downloaded cryptography Downloaded virtualenv Downloaded uv Downloaded pygments Installed 41 packages in 23ms Creating environment: docs Installing project in development mode Checking dependencies Syncing dependencies Loading template... Finding news fragments... Rendering news fragments... Writing to newsfile... Staging newsfile... Keeping the following files: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2309.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/1707.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2370.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2372.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/1707.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2326.perf.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2071.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2338.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2367.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2439.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2445.fix.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/1927.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2087.feat.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2133.breaking.md /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/release-notes/2406.fix.md Done! [rtd-command-info] start-time: 2026-05-15T15:00:35.706677Z, end-time: 2026-05-15T15:01:03.961605Z, duration: 28, exit-code: 0 uvx hatch run docs:build Running Sphinx v9.1.0 loading translations [en]... done matplotlib is not installed, social cards will not be generated making output directory... done myst v5.1.0: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence', 'html_image', 'dollarmath'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, strikethrough_single_tilde=False, colon_fence_exact_match=False, suppress_warnings=[], highlight_code_blocks=True) myst-nb v1.4.0: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, eval_name_regex='^[a-zA-Z_][a-zA-Z0-9_]*$', execution_mode='off', execution_cache_path='', execution_excludepatterns=(), execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, scroll_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False) Using jupyter-cache at: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/_build/.jupyter_cache loading intersphinx inventory 'array_api' from https://array-api.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'awkward' from https://awkward-array.org/doc/stable/objects.inv ... loading intersphinx inventory 'cupy' from https://docs.cupy.dev/en/stable/objects.inv ... loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... loading intersphinx inventory 'fsspec' from https://filesystem-spec.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'h5py' from https://docs.h5py.org/en/latest/objects.inv ... loading intersphinx inventory 'hdf5plugin' from https://hdf5plugin.readthedocs.io/en/latest/objects.inv ... loading intersphinx inventory 'kvikio' from https://docs.rapids.ai/api/kvikio/stable/objects.inv ... loading intersphinx inventory 'loompy' from https://linnarssonlab.org/loompy/objects.inv ... loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'obstore' from https://developmentseed.org/obstore/latest/objects.inv ... loading intersphinx inventory 'pandas' from https://pandas.pydata.org/pandas-docs/stable/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... loading intersphinx inventory 'sklearn' from https://scikit-learn.org/stable/objects.inv ... loading intersphinx inventory 'xarray' from https://docs.xarray.dev/en/stable/objects.inv ... loading intersphinx inventory 'zarr' from https://zarr.readthedocs.io/en/stable/objects.inv ... loading intersphinx inventory 'zarrs' from https://zarrs-python.readthedocs.io/en/stable/objects.inv ... [autosummary] generating autosummary for: _key_contributors.rst, accessors.rst, api.md, benchmark-read-write.ipynb, benchmarks.md, concatenation.rst, contributing.md, fileformat-prose.md, index.md, interoperability.md, ..., tutorials/notebooks/anncollection-annloader.ipynb, tutorials/notebooks/anncollection.ipynb, tutorials/notebooks/anndata_dask_array.ipynb, tutorials/notebooks/annloader.ipynb, tutorials/notebooks/awkward-arrays.ipynb, tutorials/notebooks/getting-started.ipynb, tutorials/notebooks/read_lazy.ipynb, tutorials/notebooks/{read,write}_dispatched.ipynb, tutorials/zarr-v3.md, typing.md /home/docs/.local/share/hatch/env/virtual/anndata/l25kgEpZ/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py:697: FutureWarning: Importing ExtensionNamespace from `types` is deprecated. Please use scverse_misc instead. return getattr(mod, name_parts[-1]), mod, modname [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.unwriteable.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.write_csvs.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.write_h5ad.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.write_loom.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.write_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.ImplicitModificationWarning.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.abc.CSCDataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.abc.CSRDataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.acc.AdAcc.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.io.read_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.io.sparse_dataset.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.io.write_elem.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.io.write_h5ad.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.io.write_zarr.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.register_anndata_namespace.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.settings.override.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.settings.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.ExtensionNamespace.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.SupportsArrayApi.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.T.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.chunk_X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.chunked_X.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.copy.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.filename.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.is_view.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.isbacked.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.isview.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.layers.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.experimental.AnnCollection.obsm.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.experimental.AnnCollection.shape.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.experimental.AnnCollection.to_adata.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.SupportsArrayApi.__array_namespace__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.SupportsArrayApi.__dlpack__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.SupportsArrayApi.__dlpack_device__.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.SupportsArrayApi.device.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.SupportsArrayApi.shape.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.SupportsArrayApi.size.rst, /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.types.SupportsArrayApi.to_device.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 23 source files that are out of date updating environment: [new config] 136 added, 0 changed, 0 removed /home/docs/.asdf/installs/python/3.14.0/lib/python3.14/importlib/__init__.py:88: ZarrUserWarning: pytest not installed, skipping test suite return _bootstrap._gcd_import(name[level:], package, level) /home/docs/.asdf/installs/python/3.14.0/lib/python3.14/importlib/__init__.py:88: ZarrUserWarning: pytest not installed, skipping test suite return _bootstrap._gcd_import(name[level:], package, level) reading sources... [ 1%] _key_contributors reading sources... [ 1%] accessors reading sources... [ 2%] api /home/docs/.local/share/hatch/env/virtual/anndata/l25kgEpZ/docs/lib/python3.14/site-packages/sphinx/ext/autosummary/__init__.py:697: FutureWarning: Importing ExtensionNamespace from `types` is deprecated. Please use scverse_misc instead. return getattr(mod, name_parts[-1]), mod, modname /home/docs/.local/share/hatch/env/virtual/anndata/l25kgEpZ/docs/lib/python3.14/site-packages/sphinx/util/inspect.py:461: FutureWarning: Importing ExtensionNamespace from `types` is deprecated. Please use scverse_misc instead. return getattr(obj, name, *defargs) reading sources... [ 3%] benchmark-read-write reading sources... [ 4%] benchmarks reading sources... [ 4%] concatenation reading sources... [ 5%] contributing reading sources... [ 6%] fileformat-prose reading sources... [ 7%] generated/anndata.AnnData reading sources... [ 7%] generated/anndata.AnnData.T reading sources... [ 8%] generated/anndata.AnnData.X reading sources... [ 9%] generated/anndata.AnnData.chunk_X reading sources... [ 10%] generated/anndata.AnnData.chunked_X reading sources... [ 10%] generated/anndata.AnnData.copy reading sources... [ 11%] generated/anndata.AnnData.filename reading sources... [ 12%] generated/anndata.AnnData.is_view reading sources... [ 12%] generated/anndata.AnnData.isbacked reading sources... [ 13%] generated/anndata.AnnData.isview reading sources... [ 14%] generated/anndata.AnnData.layers reading sources... [ 15%] generated/anndata.AnnData.n_obs reading sources... [ 15%] generated/anndata.AnnData.n_vars reading sources... [ 16%] generated/anndata.AnnData.obs reading sources... [ 17%] generated/anndata.AnnData.obs_keys reading sources... [ 18%] generated/anndata.AnnData.obs_names reading sources... [ 18%] generated/anndata.AnnData.obs_names_make_unique reading sources... [ 19%] generated/anndata.AnnData.obs_vector reading sources... [ 20%] generated/anndata.AnnData.obsm reading sources... [ 21%] generated/anndata.AnnData.obsm_keys reading sources... [ 21%] generated/anndata.AnnData.obsp reading sources... [ 22%] generated/anndata.AnnData.raw reading sources... [ 23%] generated/anndata.AnnData.rename_categories reading sources... [ 24%] generated/anndata.AnnData.shape reading sources... [ 24%] generated/anndata.AnnData.strings_to_categoricals reading sources... [ 25%] generated/anndata.AnnData.to_df reading sources... [ 26%] generated/anndata.AnnData.to_memory reading sources... [ 26%] generated/anndata.AnnData.transpose reading sources... [ 27%] generated/anndata.AnnData.uns reading sources... [ 28%] generated/anndata.AnnData.uns_keys reading sources... [ 29%] generated/anndata.AnnData.unwriteable reading sources... [ 29%] generated/anndata.AnnData.var reading sources... [ 30%] generated/anndata.AnnData.var_keys reading sources... [ 31%] generated/anndata.AnnData.var_names reading sources... 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[100%] typing looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.unwriteable.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.unwriteable /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.write_csvs.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.write_csvs /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.write_h5ad.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.write_h5ad /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.write_loom.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.write_loom /home/docs/checkouts/readthedocs.org/user_builds/icb-anndata/checkouts/latest/docs/generated/anndata.AnnData.write_zarr.rst: document is referenced in multiple toctrees: ['api', 'generated/anndata.AnnData'], selecting: generated/anndata.AnnData <- generated/anndata.AnnData.write_zarr done preparing documents... done copying assets... copying static files... 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