Read the Docs build information
Build id: 3914487
Project: icb-scanpy
Version: 1.12.x
Commit: None
Date: 2026-04-10T11:39:52.083955Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2026-04-10T11:39:52.926032Z, end-time: 2026-04-10T11:39:53.825054Z, duration: 0, exit-code: 0
git clone --depth 1 https://github.com/scverse/scanpy.git .
Cloning into '.'...

[rtd-command-info] start-time: 2026-04-10T11:39:53.927812Z, end-time: 2026-04-10T11:39:54.968678Z, duration: 1, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 refs/heads/1.12.x:refs/remotes/origin/1.12.x
From https://github.com/scverse/scanpy
 * [new branch]      1.12.x     -> origin/1.12.x
 * [new tag]         1.12.0     -> 1.12.0

[rtd-command-info] start-time: 2026-04-10T11:39:55.619407Z, end-time: 2026-04-10T11:39:55.766623Z, duration: 0, exit-code: 0
git checkout --force origin/1.12.x
Note: switching to 'origin/1.12.x'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 0aef1a7 Backport PR #4031 on branch 1.12.x (fix: copy connectivities before passing to umap-learn) (#4047)

[rtd-command-info] start-time: 2026-04-10T11:39:55.854592Z, end-time: 2026-04-10T11:39:55.895880Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# https://docs.readthedocs.io/en/stable/config-file/v2.html
version: 2
submodules:
  include: all
build:
  os: ubuntu-24.04
  tools:
    python: '3.13'
  jobs:
    post_checkout:
      # unshallow so version can be derived from tag
      - git fetch --unshallow || true
    create_environment:
      - asdf plugin add uv
      - asdf install uv latest
      - asdf global uv latest
    pre_build:
      # run towncrier to preview the next version’s release notes
      - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx hatch run towncrier build --keep || true
    build:
      html:
        - uvx hatch run docs:build
        - mv docs/_build $READTHEDOCS_OUTPUT

[rtd-command-info] start-time: 2026-04-10T11:39:56.028120Z, end-time: 2026-04-10T11:39:56.092195Z, duration: 0, exit-code: 0
git submodule sync


[rtd-command-info] start-time: 2026-04-10T11:39:56.211193Z, end-time: 2026-04-10T11:40:13.021046Z, duration: 16, exit-code: 0
git submodule update --init --force --
Submodule 'notebooks' (https://github.com/scverse/scanpy-tutorials/) registered for path 'notebooks'
Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/1.12.x/notebooks'...
Submodule path 'notebooks': checked out '33dcb2d93b4686f313019f52705d5c752b37fc4e'

[rtd-command-info] start-time: None, end-time: None, duration: None, exit-code: None
git fetch --unshallow || true