Read the Docs build information
Build id: 3867097
Project: institute-for-disease-modeling-laser-measles
Version: 141
Commit: 8010d8170e3e8e98f3b630b900cf98eb2065134f
Date: 2026-03-26T02:41:31.345911Z
State: finished
Success: True


[rtd-command-info] start-time: 2026-03-26T02:41:32.048452Z, end-time: 2026-03-26T02:41:32.527491Z, duration: 0, exit-code: 0
git clone --depth 1 https://github.com/InstituteforDiseaseModeling/laser-measles.git .
Cloning into '.'...

[rtd-command-info] start-time: 2026-03-26T02:41:32.608241Z, end-time: 2026-03-26T02:41:33.441148Z, duration: 0, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 pull/141/head:external-141
From https://github.com/InstituteforDiseaseModeling/laser-measles
 * [new ref]         refs/pull/141/head -> external-141
 * [new tag]         v0.9.0             -> v0.9.0
 * [new tag]         v0.9.1             -> v0.9.1
 * [new tag]         v0.9.1-dev0        -> v0.9.1-dev0

[rtd-command-info] start-time: 2026-03-26T02:41:34.085111Z, end-time: 2026-03-26T02:41:34.123160Z, duration: 0, exit-code: 0
git checkout --force 8010d8170e3e8e98f3b630b900cf98eb2065134f
Note: switching to '8010d8170e3e8e98f3b630b900cf98eb2065134f'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 8010d81 generate new model instance

[rtd-command-info] start-time: 2026-03-26T02:41:34.204676Z, end-time: 2026-03-26T02:41:34.237501Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
version: 2
sphinx:
  configuration: docs/conf.py
formats:
  - htmlzip
  - epub
  - pdf

build:
  os: ubuntu-22.04
  tools:
    python: "3.12"
  jobs:
    post_install:
      - python docs/tutorials/convert_tutorials.py
python:
  install:
    - requirements: docs/requirements.txt
    - method: pip
      path: .

[rtd-command-info] start-time: 2026-03-26T02:41:38.269532Z, end-time: 2026-03-26T02:41:38.323348Z, duration: 0, exit-code: 0
asdf global python 3.12.10


[rtd-command-info] start-time: 2026-03-26T02:41:38.657858Z, end-time: 2026-03-26T02:41:39.159378Z, duration: 0, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.12.10.final.0-64 in 292ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0
  activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2026-03-26T02:41:39.241655Z, end-time: 2026-03-26T02:41:43.882341Z, duration: 4, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (23.1)
Collecting pip
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/de/f0/c81e05b613866b76d2d1066490adf1a3dbc4ee9d9c839961c3fc8a6997af/pip-26.0.1-py3-none-any.whl (1.8 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 12.3 MB/s eta 0:00:00
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (67.6.1)
Collecting setuptools
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9d/76/f789f7a86709c6b087c5a2f52f911838cad707cc613162401badc665acfe/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.0/1.0 MB 16.4 MB/s eta 0:00:00
Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 67.6.1
    Uninstalling setuptools-67.6.1:
      Successfully uninstalled setuptools-67.6.1
  Attempting uninstall: pip
    Found existing installation: pip 23.1
    Uninstalling pip-23.1:
      Successfully uninstalled pip-23.1
Successfully installed pip-26.0.1 setuptools-82.0.1

[rtd-command-info] start-time: 2026-03-26T02:41:43.971115Z, end-time: 2026-03-26T02:41:50.606911Z, duration: 6, exit-code: 0
python -m pip install --upgrade --no-cache-dir sphinx
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple
Collecting sphinx
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/73/f7/b1884cb3188ab181fc81fa00c266699dab600f927a964df02ec3d5d1916a/sphinx-9.1.0-py3-none-any.whl (3.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.9/3.9 MB 15.1 MB/s  0:00:00
Collecting sphinxcontrib-applehelp>=1.0.7 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5d/85/9ebeae2f76e9e77b952f4b274c27238156eae7979c5421fba91a28f4970d/sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB)
Collecting sphinxcontrib-devhelp>=1.0.6 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/35/7a/987e583882f985fe4d7323774889ec58049171828b58c2217e7f79cdf44e/sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB)
Collecting sphinxcontrib-htmlhelp>=2.0.6 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0a/7b/18a8c0bcec9182c05a0b3ec2a776bba4ead82750a55ff798e8d406dae604/sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB)
Collecting sphinxcontrib-jsmath>=1.0.1 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/42/4c8646762ee83602e3fb3fbe774c2fac12f317deb0b5dbeeedd2d3ba4b77/sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
Collecting sphinxcontrib-qthelp>=1.0.6 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/27/83/859ecdd180cacc13b1f7e857abf8582a64552ea7a061057a6c716e790fce/sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB)
Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/52/a7/d2782e4e3f77c8450f727ba74a8f12756d5ba823d81b941f1b04da9d033a/sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB)
Collecting Jinja2>=3.1 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/62/a1/3d680cbfd5f4b8f15abc1d571870c5fc3e594bb582bc3b64ea099db13e56/jinja2-3.1.6-py3-none-any.whl (134 kB)
Collecting Pygments>=2.17 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c7/21/705964c7812476f378728bdf590ca4b771ec72385c533964653c68e86bdc/pygments-2.19.2-py3-none-any.whl (1.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 15.1 MB/s  0:00:00
Collecting docutils<0.23,>=0.21 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/02/10/5da547df7a391dcde17f59520a231527b8571e6f46fc8efb02ccb370ab12/docutils-0.22.4-py3-none-any.whl (633 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 633.2/633.2 kB 18.9 MB/s  0:00:00
Collecting snowballstemmer>=2.2 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c8/78/3565d011c61f5a43488987ee32b6f3f656e7f107ac2782dd57bdd7d91d9a/snowballstemmer-3.0.1-py3-none-any.whl (103 kB)
Collecting babel>=2.13 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/77/f5/21d2de20e8b8b0408f0681956ca2c69f1320a3848ac50e6e7f39c6159675/babel-2.18.0-py3-none-any.whl (10.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.2/10.2 MB 15.1 MB/s  0:00:00
Collecting alabaster>=0.7.14 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7e/b3/6b4067be973ae96ba0d615946e314c5ae35f9f993eca561b356540bb0c2b/alabaster-1.0.0-py3-none-any.whl (13 kB)
Collecting imagesize>=1.3 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5f/53/fb7122b71361a0d121b669dcf3d31244ef75badbbb724af388948de543e2/imagesize-2.0.0-py2.py3-none-any.whl (9.4 kB)
Collecting requests>=2.30.0 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/56/5d/c814546c2333ceea4ba42262d8c4d55763003e767fa169adc693bd524478/requests-2.33.0-py3-none-any.whl (65 kB)
Collecting roman-numerals>=1.0.0 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/04/54/6f679c435d28e0a568d8e8a7c0a93a09010818634c3c3907fc98d8983770/roman_numerals-4.1.0-py3-none-any.whl (7.7 kB)
Collecting packaging>=23.0 (from sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b7/b9/c538f279a4e237a006a2c98387d081e9eb060d203d8ed34467cc0f0b9b53/packaging-26.0-py3-none-any.whl (74 kB)
Collecting MarkupSafe>=2.0 (from Jinja2>=3.1->sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3c/2e/8d0c2ab90a8c1d9a24f0399058ab8519a3279d1bd4289511d74e909f060e/markupsafe-3.0.3-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
Collecting charset_normalizer<4,>=2 (from requests>=2.30.0->sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4e/ef/79a463eb0fff7f96afa04c1d4c51f8fc85426f918db467854bfb6a569ce3/charset_normalizer-3.4.6-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (207 kB)
Collecting idna<4,>=2.5 (from requests>=2.30.0->sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0e/61/66938bbb5fc52dbdf84594873d5b51fb1f7c7794e9c0f5bd885f30bc507b/idna-3.11-py3-none-any.whl (71 kB)
Collecting urllib3<3,>=1.26 (from requests>=2.30.0->sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/39/08/aaaad47bc4e9dc8c725e68f9d04865dbcb2052843ff09c97b08904852d84/urllib3-2.6.3-py3-none-any.whl (131 kB)
Collecting certifi>=2023.5.7 (from requests>=2.30.0->sphinx)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9a/3c/c17fb3ca2d9c3acff52e30b309f538586f9f5b9c9cf454f3845fc9af4881/certifi-2026.2.25-py3-none-any.whl (153 kB)
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, roman-numerals, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset_normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx

Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.3 Pygments-2.19.2 alabaster-1.0.0 babel-2.18.0 certifi-2026.2.25 charset_normalizer-3.4.6 docutils-0.22.4 idna-3.11 imagesize-2.0.0 packaging-26.0 requests-2.33.0 roman-numerals-4.1.0 snowballstemmer-3.0.1 sphinx-9.1.0 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.6.3

[rtd-command-info] start-time: 2026-03-26T02:41:50.699738Z, end-time: 2026-03-26T02:42:36.905932Z, duration: 46, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple
Collecting pandoc (from -r docs/requirements.txt (line 1))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/10/9a/e3186e760c57ee5f1c27ea5cea577a0ff9abfca51eefcb4d9a4cd39aff2e/pandoc-2.4.tar.gz (34 kB)
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting pypandoc (from -r docs/requirements.txt (line 2))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0c/86/e2ffa604eacfbec3f430b1d850e7e04c4101eca1a5828f9ae54bf51dfba4/pypandoc-1.17-py3-none-any.whl (23 kB)
Requirement already satisfied: sphinx>=7.3.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from -r docs/requirements.txt (line 3)) (9.1.0)
Collecting sphinx-autodoc-typehints (from -r docs/requirements.txt (line 4))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/dd/e3/ff212b51c16717681792eaf18691e6b5affbbb3d4290147c457fa9127372/sphinx_autodoc_typehints-3.9.11-py3-none-any.whl (37 kB)
Collecting pydata-sphinx-theme (from -r docs/requirements.txt (line 5))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e2/0d/8ba33fa83a7dcde13eb3c1c2a0c1cc29950a048bfed6d9b0d8b6bd710b4c/pydata_sphinx_theme-0.16.1-py3-none-any.whl (6.7 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.7/6.7 MB 15.0 MB/s  0:00:00
Collecting sphinx-design (from -r docs/requirements.txt (line 6))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/30/cf/45dd359f6ca0c3762ce0490f681da242f0530c49c81050c035c016bfdd3a/sphinx_design-0.7.0-py3-none-any.whl (2.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 15.2 MB/s  0:00:00
Collecting readthedocs-sphinx-search (from -r docs/requirements.txt (line 7))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/04/3c/41bc9d7d4d936a73e380423f23996bee1691e17598d8a03c062be6aac640/readthedocs_sphinx_search-0.3.2-py3-none-any.whl (21 kB)
Collecting sphinxcontrib-napoleon (from -r docs/requirements.txt (line 8))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/75/f2/6b7627dfe7b4e418e295e254bb15c3a6455f11f8c0ad0d43113f678049c3/sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB)
Collecting ipykernel (from -r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/82/b9/e73d5d9f405cba7706c539aa8b311b49d4c2f3d698d9c12f815231169c71/ipykernel-7.2.0-py3-none-any.whl (118 kB)
Collecting ipywidgets (from -r docs/requirements.txt (line 10))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/56/6d/0d9848617b9f753b87f214f1c682592f7ca42de085f564352f10f0843026/ipywidgets-8.1.8-py3-none-any.whl (139 kB)
Collecting nbconvert>=7.10.0 (from -r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0d/4b/8d5f796a792f8a25f6925a96032f098789f448571eb92011df1ae59e8ea8/nbconvert-7.17.0-py3-none-any.whl (261 kB)
Collecting nbsphinx>=0.9.5 (from -r docs/requirements.txt (line 12))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/03/78/843bcf0cf31f88d2f8a9a063d2d80817b1901657d83d65b89b3aa835732e/nbsphinx-0.9.8-py3-none-any.whl (31 kB)
Collecting plantweb (from -r docs/requirements.txt (line 13))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/3d/d2d36e503d131d99980db36844679ba6a9edda08b493d86ace8560c02c39/plantweb-1.3.0-py3-none-any.whl (20 kB)
Collecting sciris (from -r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/13/dd/dd8239d8f6cc8e758600643a9f8e234a1ed8def948b2208846ce06f37b93/sciris-3.2.9-py3-none-any.whl (258 kB)
Collecting matplotlib (from -r docs/requirements.txt (line 15))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3e/f3/c5195b1ae57ef85339fd7285dfb603b22c8b4e79114bae5f4f0fcf688677/matplotlib-3.10.8-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (8.7 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.7/8.7 MB 15.1 MB/s  0:00:00
Collecting scipy (from -r docs/requirements.txt (line 16))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/01/8e/1e35281b8ab6d5d72ebe9911edcdffa3f36b04ed9d51dec6dd140396e220/scipy-1.17.1-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 35.2/35.2 MB 15.1 MB/s  0:00:02
Collecting seaborn (from -r docs/requirements.txt (line 17))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/83/11/00d3c3dfc25ad54e731d91449895a79e4bf2384dc3ac01809010ba88f6d5/seaborn-0.13.2-py3-none-any.whl (294 kB)
Collecting jupytext (from -r docs/requirements.txt (line 18))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/16/5a/736dd2f4535dbf3bf26523f9158c011389ef88dd06ec2eef67fd744f1c7b/jupytext-1.19.1-py3-none-any.whl (170 kB)
Collecting autodoc_pydantic>=2.0.0 (from -r docs/requirements.txt (line 19))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7b/df/87120e2195f08d760bc5cf8a31cfa2381a6887517aa89453b23f1ae3354f/autodoc_pydantic-2.2.0-py3-none-any.whl (34 kB)
Collecting plumbum (from pandoc->-r docs/requirements.txt (line 1))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/79/ad/45312df6b63ba64ea35b8d8f5f0c577aac16e6b416eafe8e1cb34e03f9a7/plumbum-1.10.0-py3-none-any.whl (127 kB)
Collecting ply (from pandoc->-r docs/requirements.txt (line 1))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a3/58/35da89ee790598a0700ea49b2a66594140f44dec458c07e8e3d4979137fc/ply-3.11-py2.py3-none-any.whl (49 kB)
Requirement already satisfied: sphinxcontrib-applehelp>=1.0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: sphinxcontrib-devhelp>=1.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.1.0)
Requirement already satisfied: sphinxcontrib-jsmath>=1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (1.0.1)
Requirement already satisfied: sphinxcontrib-qthelp>=1.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: Jinja2>=3.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.1.6)
Requirement already satisfied: Pygments>=2.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.19.2)
Requirement already satisfied: docutils<0.23,>=0.21 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (0.22.4)
Requirement already satisfied: snowballstemmer>=2.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.0.1)
Requirement already satisfied: babel>=2.13 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.18.0)
Requirement already satisfied: alabaster>=0.7.14 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (1.0.0)
Requirement already satisfied: imagesize>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: requests>=2.30.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.33.0)
Requirement already satisfied: roman-numerals>=1.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (4.1.0)
Requirement already satisfied: packaging>=23.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (26.0)
Collecting beautifulsoup4 (from pydata-sphinx-theme->-r docs/requirements.txt (line 5))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1a/39/47f9197bdd44df24d67ac8893641e16f386c984a0619ef2ee4c51fbbc019/beautifulsoup4-4.14.3-py3-none-any.whl (107 kB)
Collecting accessible-pygments (from pydata-sphinx-theme->-r docs/requirements.txt (line 5))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8d/3f/95338030883d8c8b91223b4e21744b04d11b161a3ef117295d8241f50ab4/accessible_pygments-0.0.5-py3-none-any.whl (1.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 16.3 MB/s  0:00:00
Collecting typing-extensions (from pydata-sphinx-theme->-r docs/requirements.txt (line 5))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/18/67/36e9267722cc04a6b9f15c7f3441c2363321a3ea07da7ae0c0707beb2a9c/typing_extensions-4.15.0-py3-none-any.whl (44 kB)
Collecting six>=1.5.2 (from sphinxcontrib-napoleon->-r docs/requirements.txt (line 8))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b7/ce/149a00dd41f10bc29e5921b496af8b574d8413afcd5e30dfa0ed46c2cc5e/six-1.17.0-py2.py3-none-any.whl (11 kB)
Collecting pockets>=0.3 (from sphinxcontrib-napoleon->-r docs/requirements.txt (line 8))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e9/2f/a4583c70fbd8cd04910e2884bcc2bdd670e884061f7b4d70bc13e632a993/pockets-0.9.1-py2.py3-none-any.whl (26 kB)
Collecting comm>=0.1.1 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/60/97/891a0971e1e4a8c5d2b20bbe0e524dc04548d2307fee33cdeba148fd4fc7/comm-0.2.3-py3-none-any.whl (7.3 kB)
Collecting debugpy>=1.6.5 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ab/78/b193a3975ca34458f6f0e24aaf5c3e3da72f5401f6054c0dfd004b41726f/debugpy-1.8.20-cp312-cp312-manylinux_2_34_x86_64.whl (4.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.3/4.3 MB 15.2 MB/s  0:00:00
Collecting ipython>=7.23.1 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b2/90/45c72becc57158facc6a6404f663b77bbcea2519ca57f760e2879ae1315d/ipython-9.11.0-py3-none-any.whl (624 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 624.2/624.2 kB 20.0 MB/s  0:00:00
Collecting jupyter-client>=8.8.0 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2d/0b/ceb7694d864abc0a047649aec263878acb9f792e1fec3e676f22dc9015e3/jupyter_client-8.8.0-py3-none-any.whl (107 kB)
Collecting jupyter-core!=6.0.*,>=5.1 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e7/e7/80988e32bf6f73919a113473a604f5a8f09094de312b9d52b79c2df7612b/jupyter_core-5.9.1-py3-none-any.whl (29 kB)
Collecting matplotlib-inline>=0.1 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/af/33/ee4519fa02ed11a94aef9559552f3b17bb863f2ecfe1a35dc7f548cde231/matplotlib_inline-0.2.1-py3-none-any.whl (9.5 kB)
Collecting nest-asyncio>=1.4 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a0/c4/c2971a3ba4c6103a3d10c4b0f24f461ddc027f0f09763220cf35ca1401b3/nest_asyncio-1.6.0-py3-none-any.whl (5.2 kB)
Collecting psutil>=5.7 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b5/70/5d8df3b09e25bce090399cf48e452d25c935ab72dad19406c77f4e828045/psutil-7.2.2-cp36-abi3-manylinux2010_x86_64.manylinux_2_12_x86_64.manylinux_2_28_x86_64.whl (155 kB)
Collecting pyzmq>=25 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f8/9b/c108cdb55560eaf253f0cbdb61b29971e9fb34d9c3499b0e96e4e60ed8a5/pyzmq-27.1.0-cp312-abi3-manylinux_2_26_x86_64.manylinux_2_28_x86_64.whl (840 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 841.0/841.0 kB 16.1 MB/s  0:00:00
Collecting tornado>=6.4.1 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b2/04/7b5705d5b3c0fab088f434f9c83edac1573830ca49ccf29fb83bf7178eec/tornado-6.5.5-cp39-abi3-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (447 kB)
Collecting traitlets>=5.4.0 (from ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/00/c0/8f5d070730d7836adc9c9b6408dec68c6ced86b304a9b26a14df072a6e8c/traitlets-5.14.3-py3-none-any.whl (85 kB)
Collecting widgetsnbextension~=4.0.14 (from ipywidgets->-r docs/requirements.txt (line 10))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3f/0e/fa3b193432cfc60c93b42f3be03365f5f909d2b3ea410295cf36df739e31/widgetsnbextension-4.0.15-py3-none-any.whl (2.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 15.7 MB/s  0:00:00
Collecting jupyterlab_widgets~=3.0.15 (from ipywidgets->-r docs/requirements.txt (line 10))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ab/b5/36c712098e6191d1b4e349304ef73a8d06aed77e56ceaac8c0a306c7bda1/jupyterlab_widgets-3.0.16-py3-none-any.whl (914 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 914.9/914.9 kB 14.8 MB/s  0:00:00
Collecting bleach!=5.0.0 (from bleach[css]!=5.0.0->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cd/3a/577b549de0cc09d95f11087ee63c739bba856cd3952697eec4c4bb91350a/bleach-6.3.0-py3-none-any.whl (164 kB)
Collecting defusedxml (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/07/6c/aa3f2f849e01cb6a001cd8554a88d4c77c5c1a31c95bdf1cf9301e6d9ef4/defusedxml-0.7.1-py2.py3-none-any.whl (25 kB)
Collecting jupyterlab-pygments (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/dd/ead9d8ea85bf202d90cc513b533f9c363121c7792674f78e0d8a854b63b4/jupyterlab_pygments-0.3.0-py3-none-any.whl (15 kB)
Requirement already satisfied: markupsafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) (3.0.3)
Collecting mistune<4,>=2.0.3 (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9b/f7/4a5e785ec9fbd65146a27b6b70b6cdc161a66f2024e4b04ac06a67f5578b/mistune-3.2.0-py3-none-any.whl (53 kB)
Collecting nbclient>=0.5.0 (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/83/a0/5b0c2f11142ed1dddec842457d3f65eaf71a0080894eb6f018755b319c3a/nbclient-0.10.4-py3-none-any.whl (25 kB)
Collecting nbformat>=5.7 (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a9/82/0340caa499416c78e5d8f5f05947ae4bc3cba53c9f038ab6e9ed964e22f1/nbformat-5.10.4-py3-none-any.whl (78 kB)
Collecting pandocfilters>=1.4.1 (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ef/af/4fbc8cab944db5d21b7e2a5b8e9211a03a79852b1157e2c102fcc61ac440/pandocfilters-1.5.1-py2.py3-none-any.whl (8.7 kB)
Collecting numpy (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bd/79/cc665495e4d57d0aa6fbcc0aa57aa82671dfc78fbf95fe733ed86d98f52a/numpy-2.4.3-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.6/16.6 MB 15.0 MB/s  0:00:01
Collecting pandas (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3d/fe/89d77e424365280b79d99b3e1e7d606f5165af2f2ecfaf0c6d24c799d607/pandas-3.0.1-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (10.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.9/10.9 MB 15.1 MB/s  0:00:00
Collecting openpyxl (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/da/977ded879c29cbd04de313843e76868e6e13408a94ed6b987245dc7c8506/openpyxl-3.1.5-py2.py3-none-any.whl (250 kB)
Collecting xlsxwriter (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3a/0c/3662f4a66880196a590b202f0db82d919dd2f89e99a27fadef91c4a33d41/xlsxwriter-3.2.9-py3-none-any.whl (175 kB)
Collecting dill (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1e/77/dc8c558f7593132cf8fefec57c4f60c83b16941c574ac5f619abb3ae7933/dill-0.4.1-py3-none-any.whl (120 kB)
Collecting zstandard (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/53/60/7be26e610767316c028a2cbedb9a3beabdbe33e2182c373f71a1c0b88f36/zstandard-0.25.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.5/5.5 MB 15.0 MB/s  0:00:00
Collecting multiprocess (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/71/70/38998b950a97ea279e6bd657575d22d1a2047256caf707d9a10fbce4f065/multiprocess-0.70.19-py312-none-any.whl (150 kB)
Collecting jsonpickle (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c1/73/04df8a6fa66d43a9fd45c30f283cc4afff17da671886e451d52af60bdc7e/jsonpickle-4.1.1-py3-none-any.whl (47 kB)
Collecting pyyaml (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8b/9d/b3589d3877982d4f2329302ef98a8026e7f4443c765c46cfecc8858c6b4b/pyyaml-6.0.3-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (807 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 807.9/807.9 kB 15.8 MB/s  0:00:00
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris->-r docs/requirements.txt (line 14)) (82.0.1)
Collecting gitpython (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/6a/09/e21df6aef1e1ffc0c816f0522ddc3f6dcded766c3261813131c78a704470/gitpython-3.1.46-py3-none-any.whl (208 kB)
Collecting jellyfish (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4e/be/f9f9a0b7ba48c994e0573d718e39bde713572cfb11f967d97328420a7aef/jellyfish-1.2.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (360 kB)
Collecting tqdm (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/16/e1/3079a9ff9b8e11b846c6ac5c8b5bfb7ff225eee721825310c91b3b50304f/tqdm-4.67.3-py3-none-any.whl (78 kB)
Collecting python-dateutil (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ec/57/56b9bcc3c9c6a792fcbaf139543cee77261f3651ca9da0c93f5c1221264b/python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Collecting memory_profiler (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/49/26/aaca612a0634ceede20682e692a6c55e35a94c21ba36b807cc40fe910ae1/memory_profiler-0.61.0-py3-none-any.whl (31 kB)
Collecting line_profiler (from sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0d/6c/2d0286f67e6bb2b00ae23f9af6df18bfc6bb1ac5d803a8f46bd3eb22a8f1/line_profiler-5.0.2-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (1.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 15.5 MB/s  0:00:00
Collecting contourpy>=1.0.1 (from matplotlib->-r docs/requirements.txt (line 15))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cc/8f/ec6289987824b29529d0dfda0d74a07cec60e54b9c92f3c9da4c0ac732de/contourpy-1.3.3-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (362 kB)
Collecting cycler>=0.10 (from matplotlib->-r docs/requirements.txt (line 15))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e7/05/c19819d5e3d95294a6f5947fb9b9629efb316b96de511b418c53d245aae6/cycler-0.12.1-py3-none-any.whl (8.3 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r docs/requirements.txt (line 15))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9b/8a/99c8b3c3888c5c474c08dbfd7c8899786de9604b727fcefb055b42c84bba/fonttools-4.62.1-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.0 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.0/5.0 MB 15.1 MB/s  0:00:00
Collecting kiwisolver>=1.3.1 (from matplotlib->-r docs/requirements.txt (line 15))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c4/13/680c54afe3e65767bed7ec1a15571e1a2f1257128733851ade24abcefbcc/kiwisolver-1.5.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (1.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 15.6 MB/s  0:00:00
Collecting pillow>=8 (from matplotlib->-r docs/requirements.txt (line 15))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ff/79/6df7b2ee763d619cda2fb4fea498e5f79d984dae304d45a8999b80d6cf5c/pillow-12.1.1-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 15.2 MB/s  0:00:00
Collecting pyparsing>=3 (from matplotlib->-r docs/requirements.txt (line 15))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/10/bd/c038d7cc38edc1aa5bf91ab8068b63d4308c66c4c8bb3cbba7dfbc049f9c/pyparsing-3.3.2-py3-none-any.whl (122 kB)
Collecting markdown-it-py>=1.0 (from jupytext->-r docs/requirements.txt (line 18))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/94/54/e7d793b573f298e1c9013b8c4dade17d481164aa517d1d7148619c2cedbf/markdown_it_py-4.0.0-py3-none-any.whl (87 kB)
Collecting mdit-py-plugins (from jupytext->-r docs/requirements.txt (line 18))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fb/86/dd6e5db36df29e76c7a7699123569a4a18c1623ce68d826ed96c62643cae/mdit_py_plugins-0.5.0-py3-none-any.whl (57 kB)
Collecting pydantic<3.0.0,>=2.0 (from autodoc_pydantic>=2.0.0->-r docs/requirements.txt (line 19))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5a/87/b70ad306ebb6f9b585f114d0ac2137d792b48be34d732d60e597c2f8465a/pydantic-2.12.5-py3-none-any.whl (463 kB)
Collecting pydantic-settings<3.0.0,>=2.0 (from autodoc_pydantic>=2.0.0->-r docs/requirements.txt (line 19))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/00/4b/ccc026168948fec4f7555b9164c724cf4125eac006e176541483d2c959be/pydantic_settings-2.13.1-py3-none-any.whl (58 kB)
Collecting annotated-types>=0.6.0 (from pydantic<3.0.0,>=2.0->autodoc_pydantic>=2.0.0->-r docs/requirements.txt (line 19))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/78/b6/6307fbef88d9b5ee7421e68d78a9f162e0da4900bc5f5793f6d3d0e34fb8/annotated_types-0.7.0-py3-none-any.whl (13 kB)
Collecting pydantic-core==2.41.5 (from pydantic<3.0.0,>=2.0->autodoc_pydantic>=2.0.0->-r docs/requirements.txt (line 19))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0d/76/941cc9f73529988688a665a5c0ecff1112b3d95ab48f81db5f7606f522d3/pydantic_core-2.41.5-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 15.9 MB/s  0:00:00
Collecting typing-inspection>=0.4.2 (from pydantic<3.0.0,>=2.0->autodoc_pydantic>=2.0.0->-r docs/requirements.txt (line 19))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/dc/9b/47798a6c91d8bdb567fe2698fe81e0c6b7cb7ef4d13da4114b41d239f65d/typing_inspection-0.4.2-py3-none-any.whl (14 kB)
Collecting python-dotenv>=0.21.0 (from pydantic-settings<3.0.0,>=2.0->autodoc_pydantic>=2.0.0->-r docs/requirements.txt (line 19))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0b/d7/1959b9648791274998a9c3526f6d0ec8fd2233e4d4acce81bbae76b44b2a/python_dotenv-1.2.2-py3-none-any.whl (22 kB)
Collecting webencodings (from bleach!=5.0.0->bleach[css]!=5.0.0->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl (11 kB)
Collecting tinycss2<1.5,>=1.1.0 (from bleach[css]!=5.0.0->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e6/34/ebdc18bae6aa14fbee1a08b63c015c72b64868ff7dae68808ab500c492e2/tinycss2-1.4.0-py3-none-any.whl (26 kB)
Collecting decorator>=5.1.0 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4e/8c/f3147f5c4b73e7550fe5f9352eaa956ae838d5c51eb58e7a25b9f3e2643b/decorator-5.2.1-py3-none-any.whl (9.2 kB)
Collecting ipython-pygments-lexers>=1.0.0 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d9/33/1f075bf72b0b747cb3288d011319aaf64083cf2efef8354174e3ed4540e2/ipython_pygments_lexers-1.1.1-py3-none-any.whl (8.1 kB)
Collecting jedi>=0.18.2 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/5a/9cac0c82afec3d09ccd97c8b6502d48f165f9124db81b4bcb90b4af974ee/jedi-0.19.2-py2.py3-none-any.whl (1.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 15.1 MB/s  0:00:00
Collecting pexpect>4.6 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/c3/059298687310d527a58bb01f3b1965787ee3b40dce76752eda8b44e9a2c5/pexpect-4.9.0-py2.py3-none-any.whl (63 kB)
Collecting prompt_toolkit<3.1.0,>=3.0.41 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/84/03/0d3ce49e2505ae70cf43bc5bb3033955d2fc9f932163e84dc0779cc47f48/prompt_toolkit-3.0.52-py3-none-any.whl (391 kB)
Collecting stack_data>=0.6.0 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f1/7b/ce1eafaf1a76852e2ec9b22edecf1daa58175c090266e9f6c64afcd81d91/stack_data-0.6.3-py3-none-any.whl (24 kB)
Collecting wcwidth (from prompt_toolkit<3.1.0,>=3.0.41->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/68/5a/199c59e0a824a3db2b89c5d2dade7ab5f9624dbf6448dc291b46d5ec94d3/wcwidth-0.6.0-py3-none-any.whl (94 kB)
Collecting parso<0.9.0,>=0.8.4 (from jedi>=0.18.2->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b6/61/fae042894f4296ec49e3f193aff5d7c18440da9e48102c3315e1bc4519a7/parso-0.8.6-py2.py3-none-any.whl (106 kB)
Collecting platformdirs>=2.5 (from jupyter-core!=6.0.*,>=5.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/63/d7/97f7e3a6abb67d8080dd406fd4df842c2be0efaf712d1c899c32a075027c/platformdirs-4.9.4-py3-none-any.whl (21 kB)
Collecting mdurl~=0.1 (from markdown-it-py>=1.0->jupytext->-r docs/requirements.txt (line 18))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b3/38/89ba8ad64ae25be8de66a6d463314cf1eb366222074cfda9ee839c56a4b4/mdurl-0.1.2-py3-none-any.whl (10.0 kB)
Collecting fastjsonschema>=2.15 (from nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cb/a8/20d0723294217e47de6d9e2e40fd4a9d2f7c4b6ef974babd482a59743694/fastjsonschema-2.21.2-py3-none-any.whl (24 kB)
Collecting jsonschema>=2.6 (from nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/69/90/f63fb5873511e014207a475e2bb4e8b2e570d655b00ac19a9a0ca0a385ee/jsonschema-4.26.0-py3-none-any.whl (90 kB)
Collecting attrs>=22.2.0 (from jsonschema>=2.6->nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/64/b4/17d4b0b2a2dc85a6df63d1157e028ed19f90d4cd97c36717afef2bc2f395/attrs-26.1.0-py3-none-any.whl (67 kB)
Collecting jsonschema-specifications>=2023.03.6 (from jsonschema>=2.6->nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/41/45/1a4ed80516f02155c51f51e8cedb3c1902296743db0bbc66608a0db2814f/jsonschema_specifications-2025.9.1-py3-none-any.whl (18 kB)
Collecting referencing>=0.28.4 (from jsonschema>=2.6->nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2c/58/ca301544e1fa93ed4f80d724bf5b194f6e4b945841c5bfd555878eea9fcb/referencing-0.37.0-py3-none-any.whl (26 kB)
Collecting rpds-py>=0.25.0 (from jsonschema>=2.6->nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/60/1b/6f8f29f3f995c7ffdde46a626ddccd7c63aefc0efae881dc13b6e5d5bb16/rpds_py-0.30.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (394 kB)
Collecting ptyprocess>=0.5 (from pexpect>4.6->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/22/a6/858897256d0deac81a172289110f31629fc4cee19b6f01283303e18c8db3/ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Requirement already satisfied: charset_normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.4.6)
Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.11)
Requirement already satisfied: urllib3<3,>=1.26 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.6.3)
Requirement already satisfied: certifi>=2023.5.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2026.2.25)
Collecting executing>=1.2.0 (from stack_data>=0.6.0->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c1/ea/53f2148663b321f21b5a606bd5f191517cf40b7072c0497d3c92c4a13b1e/executing-2.2.1-py2.py3-none-any.whl (28 kB)
Collecting asttokens>=2.1.0 (from stack_data>=0.6.0->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d2/39/e7eaf1799466a4aef85b6a4fe7bd175ad2b1c6345066aa33f1f58d4b18d0/asttokens-3.0.1-py3-none-any.whl (27 kB)
Collecting pure-eval (from stack_data>=0.6.0->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8e/37/efad0257dc6e593a18957422533ff0f87ede7c9c6ea010a2177d738fb82f/pure_eval-0.2.3-py3-none-any.whl (11 kB)
Collecting soupsieve>=1.6.1 (from beautifulsoup4->pydata-sphinx-theme->-r docs/requirements.txt (line 5))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/46/2c/1462b1d0a634697ae9e55b3cecdcb64788e8b7d63f54d923fcd0bb140aed/soupsieve-2.8.3-py3-none-any.whl (37 kB)
Collecting gitdb<5,>=4.0.1 (from gitpython->sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a0/61/5c78b91c3143ed5c14207f463aecfc8f9dbb5092fb2869baf37c273b2705/gitdb-4.0.12-py3-none-any.whl (62 kB)
Collecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->gitpython->sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c1/d4/59e74daffcb57a07668852eeeb6035af9f32cbfd7a1d2511f17d2fe6a738/smmap-5.0.3-py3-none-any.whl (24 kB)
Collecting et-xmlfile (from openpyxl->sciris->-r docs/requirements.txt (line 14))
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c1/8b/5fe2cc11fee489817272089c4203e679c63b570a5aaeb18d852ae3cbba6a/et_xmlfile-2.0.0-py3-none-any.whl (18 kB)
Building wheels for collected packages: pandoc
  Building wheel for pandoc (pyproject.toml): started
  Building wheel for pandoc (pyproject.toml): finished with status 'done'
  Created wheel for pandoc: filename=pandoc-2.4-py3-none-any.whl size=34871 sha256=b73632bce301dabe046ee8c168fa31642f5c21841821a281133bc41deeccb02d
  Stored in directory: /tmp/pip-ephem-wheel-cache-erike07n/wheels/48/c9/1f/4e719eb39abdab7e13324bc447609284c7bb8a5ce5836dc838
Successfully built pandoc
Installing collected packages: webencodings, pure-eval, ptyprocess, ply, fastjsonschema, zstandard, xlsxwriter, widgetsnbextension, wcwidth, typing-extensions, traitlets, tqdm, tornado, tinycss2, soupsieve, smmap, six, rpds-py, readthedocs-sphinx-search, pyzmq, pyyaml, python-dotenv, pyparsing, pypandoc, psutil, plumbum, platformdirs, pillow, pexpect, parso, pandocfilters, numpy, nest-asyncio, mistune, mdurl, kiwisolver, jupyterlab_widgets, jupyterlab-pygments, jsonpickle, jellyfish, ipython-pygments-lexers, fonttools, executing, et-xmlfile, dill, defusedxml, decorator, debugpy, cycler, comm, bleach, attrs, asttokens, annotated-types, accessible-pygments, typing-inspection, stack_data, scipy, referencing, python-dateutil, pydantic-core, prompt_toolkit, pockets, plantweb, pandoc, openpyxl, multiprocess, memory_profiler, matplotlib-inline, markdown-it-py, line_profiler, jupyter-core, jedi, gitdb, contourpy, beautifulsoup4, sphinxcontrib-napoleon, sphinx-design, sphinx-autodoc-typehints, pydata-sphinx-theme, pydantic, pandas, mdit-py-plugins, matplotlib, jupyter-client, jsonschema-specifications, ipython, gitpython, seaborn, sciris, pydantic-settings, jsonschema, ipywidgets, ipykernel, nbformat, autodoc_pydantic, nbclient, jupytext, nbconvert, nbsphinx

Successfully installed accessible-pygments-0.0.5 annotated-types-0.7.0 asttokens-3.0.1 attrs-26.1.0 autodoc_pydantic-2.2.0 beautifulsoup4-4.14.3 bleach-6.3.0 comm-0.2.3 contourpy-1.3.3 cycler-0.12.1 debugpy-1.8.20 decorator-5.2.1 defusedxml-0.7.1 dill-0.4.1 et-xmlfile-2.0.0 executing-2.2.1 fastjsonschema-2.21.2 fonttools-4.62.1 gitdb-4.0.12 gitpython-3.1.46 ipykernel-7.2.0 ipython-9.11.0 ipython-pygments-lexers-1.1.1 ipywidgets-8.1.8 jedi-0.19.2 jellyfish-1.2.1 jsonpickle-4.1.1 jsonschema-4.26.0 jsonschema-specifications-2025.9.1 jupyter-client-8.8.0 jupyter-core-5.9.1 jupyterlab-pygments-0.3.0 jupyterlab_widgets-3.0.16 jupytext-1.19.1 kiwisolver-1.5.0 line_profiler-5.0.2 markdown-it-py-4.0.0 matplotlib-3.10.8 matplotlib-inline-0.2.1 mdit-py-plugins-0.5.0 mdurl-0.1.2 memory_profiler-0.61.0 mistune-3.2.0 multiprocess-0.70.19 nbclient-0.10.4 nbconvert-7.17.0 nbformat-5.10.4 nbsphinx-0.9.8 nest-asyncio-1.6.0 numpy-2.4.3 openpyxl-3.1.5 pandas-3.0.1 pandoc-2.4 pandocfilters-1.5.1 parso-0.8.6 pexpect-4.9.0 pillow-12.1.1 plantweb-1.3.0 platformdirs-4.9.4 plumbum-1.10.0 ply-3.11 pockets-0.9.1 prompt_toolkit-3.0.52 psutil-7.2.2 ptyprocess-0.7.0 pure-eval-0.2.3 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-settings-2.13.1 pydata-sphinx-theme-0.16.1 pypandoc-1.17 pyparsing-3.3.2 python-dateutil-2.9.0.post0 python-dotenv-1.2.2 pyyaml-6.0.3 pyzmq-27.1.0 readthedocs-sphinx-search-0.3.2 referencing-0.37.0 rpds-py-0.30.0 scipy-1.17.1 sciris-3.2.9 seaborn-0.13.2 six-1.17.0 smmap-5.0.3 soupsieve-2.8.3 sphinx-autodoc-typehints-3.9.11 sphinx-design-0.7.0 sphinxcontrib-napoleon-0.7 stack_data-0.6.3 tinycss2-1.4.0 tornado-6.5.5 tqdm-4.67.3 traitlets-5.14.3 typing-extensions-4.15.0 typing-inspection-0.4.2 wcwidth-0.6.0 webencodings-0.5.1 widgetsnbextension-4.0.15 xlsxwriter-3.2.9 zstandard-0.25.0

[rtd-command-info] start-time: 2026-03-26T02:42:36.994569Z, end-time: 2026-03-26T02:43:18.248381Z, duration: 41, exit-code: 0
python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .
Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple
Processing ./.
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting numba>=0.61.0 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9b/89/1a74ea99b180b7a5587b0301ed1b183a2937c4b4b67f7994689b5d36fc34/numba-0.64.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.8 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.8/3.8 MB 15.2 MB/s  0:00:00
Collecting laser-core>=1.0.0 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/40/c1/b132127dd83d1f09bf2b1d24597d6fa25e72b94617d72735db9a382481e8/laser_core-1.0.1-cp312-cp312-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (48 kB)
Collecting diskcache>=5.6.3 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3f/27/4570e78fc0bf5ea0ca45eb1de3818a23787af9b390c0b0a0033a1b8236f9/diskcache-5.6.3-py3-none-any.whl (45 kB)
Collecting appdirs>=1.4.4 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3b/00/2344469e2084fb287c2e0b57b72910309874c3245463acd6cf5e3db69324/appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
Requirement already satisfied: pydantic>=2.11.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from laser.measles==0.9.2) (2.12.5)
Collecting pycountry>=24.6.1 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9c/42/7703bd45b62fecd44cd7d3495423097e2f7d28bc2e99e7c1af68892ab157/pycountry-26.2.16-py3-none-any.whl (8.0 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.0/8.0 MB 15.1 MB/s  0:00:00
Requirement already satisfied: requests>=2.32.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from laser.measles==0.9.2) (2.33.0)
Collecting alive-progress>=3.2.0 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/26/85/ec72f6c885703d18f3b09769645e950e14c7d0cc0a0e35d94127983f666f/alive_progress-3.3.0-py3-none-any.whl (78 kB)
Requirement already satisfied: sciris>=3.2.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from laser.measles==0.9.2) (3.2.9)
Collecting polars>=1.30.0 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b4/db/08f4ca10c5018813e7e0b59e4472302328b3d2ab1512f5a2157a814540e0/polars-1.39.3-py3-none-any.whl (823 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 824.0/824.0 kB 16.1 MB/s  0:00:00
Collecting pyarrow>=20.0.0 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2c/a5/da83046273d990f256cb79796a190bbf7ec999269705ddc609403f8c6b06/pyarrow-23.0.1-cp312-cp312-manylinux_2_28_x86_64.whl (47.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.6/47.6 MB 14.8 MB/s  0:00:03
Collecting rastertoolkit>=0.4.9 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/32/e3/61aa63c3ea04fce1a578432d5c368cf221032afba13fdb4973c8eae731c8/rastertoolkit-0.4.9-py3-none-any.whl (15 kB)
Collecting typer>=0.12.0 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4a/91/48db081e7a63bb37284f9fbcefda7c44c277b18b0e13fbc36ea2335b71e6/typer-0.24.1-py3-none-any.whl (56 kB)
Collecting patito>=0.8.3 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/16/c6/9e76a75b99339367c9fdc8eb27bdc3ed73f8a4944a7484025072dd45e388/patito-0.8.6-py3-none-any.whl (43 kB)
Collecting pyvd>=1.0.1 (from laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/17/84/4b8d39811f468724e29ad275b04193297cf4f8089fd5818ea4fe0a83101a/pyvd-1.0.1-py3-none-any.whl (2.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.9/2.9 MB 15.4 MB/s  0:00:00
Collecting about-time==4.2.1 (from alive-progress>=3.2.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fb/cd/7ee00d6aa023b1d0551da0da5fee3bc23c3eeea632fbfc5126d1fec52b7e/about_time-4.2.1-py3-none-any.whl (13 kB)
Collecting graphemeu==0.7.2 (from alive-progress>=3.2.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/69/18/36503ea63e1ecd0a95590d7b6b8b7d227a1e4541a154e1612a231def1bdc/graphemeu-0.7.2-py3-none-any.whl (22 kB)
Collecting click (from laser-core>=1.0.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/98/78/01c019cdb5d6498122777c1a43056ebb3ebfeef2076d9d026bfe15583b2b/click-8.3.1-py3-none-any.whl (108 kB)
Requirement already satisfied: numpy in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from laser-core>=1.0.0->laser.measles==0.9.2) (2.4.3)
Requirement already satisfied: matplotlib in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from laser-core>=1.0.0->laser.measles==0.9.2) (3.10.8)
Requirement already satisfied: pandas in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from laser-core>=1.0.0->laser.measles==0.9.2) (3.0.1)
Collecting h5py (from laser-core>=1.0.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/e9/1a19e42cd43cc1365e127db6aae85e1c671da1d9a5d746f4d34a50edb577/h5py-3.16.0-cp312-cp312-manylinux_2_28_x86_64.whl (5.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.4/5.4 MB 15.1 MB/s  0:00:00
Collecting geopandas (from laser-core>=1.0.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3c/78/6a04792ace63a93e162f1305392d500ae8ddcb620e7eb88a22fd622b35bb/geopandas-1.1.3-py3-none-any.whl (342 kB)
Collecting shapely (from laser-core>=1.0.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b9/37/e781683abac55dde9771e086b790e554811a71ed0b2b8a1e789b7430dd44/shapely-2.1.2-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 15.5 MB/s  0:00:00
Collecting uv>=0.10.5 (from laser-core>=1.0.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c3/25/9ef73c8b6ef04b0cead7d8f1547034568e3e58f3397b55b83167e587f84a/uv-0.11.1-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (24.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 24.5/24.5 MB 14.9 MB/s  0:00:01
Collecting llvmlite<0.47,>=0.46.0dev0 (from numba>=0.61.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/aa/85/4890a7c14b4fa54400945cb52ac3cd88545bbdb973c440f98ca41591cdc5/llvmlite-0.46.0-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (56.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 56.3/56.3 MB 15.1 MB/s  0:00:03
Requirement already satisfied: typing-extensions in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from patito>=0.8.3->laser.measles==0.9.2) (4.15.0)
Collecting polars-runtime-32==1.39.3 (from polars>=1.30.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b0/15/fc3e43f3fdf3f20b7dfb5abe871ab6162cf8fb4aeabf4cfad822d5dc4c79/polars_runtime_32-1.39.3-cp310-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (46.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 46.9/46.9 MB 15.0 MB/s  0:00:03
Requirement already satisfied: annotated-types>=0.6.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from pydantic>=2.11.5->laser.measles==0.9.2) (0.7.0)
Requirement already satisfied: pydantic-core==2.41.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from pydantic>=2.11.5->laser.measles==0.9.2) (2.41.5)
Requirement already satisfied: typing-inspection>=0.4.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from pydantic>=2.11.5->laser.measles==0.9.2) (0.4.2)
Collecting pyshp~=3.0 (from rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/82/06/cad54e8ce758bd836ee5411691cbd49efeb9cc611b374670fce299519334/pyshp-3.0.3-py3-none-any.whl (58 kB)
Collecting pyproj~=3.6 (from rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b8/be/212882c450bba74fc8d7d35cbd57e4af84792f0a56194819d98106b075af/pyproj-3.7.2-cp312-cp312-manylinux_2_28_x86_64.whl (9.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.6/9.6 MB 15.1 MB/s  0:00:00
Collecting scikit-learn~=1.6 (from rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/97/74/b7a304feb2b49df9fafa9382d4d09061a96ee9a9449a7cbea7988dda0828/scikit_learn-1.8.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (8.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.9/8.9 MB 15.1 MB/s  0:00:00
Collecting tifffile~=2025.0 (from tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1b/fe/e59859aa1134fac065d36864752daf13215c98b379cb5d93f954dc0ec830/tifffile-2025.12.20-py3-none-any.whl (232 kB)
Requirement already satisfied: contourpy>=1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (1.3.3)
Requirement already satisfied: cycler>=0.10 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (0.12.1)
Requirement already satisfied: fonttools>=4.22.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (4.62.1)
Requirement already satisfied: kiwisolver>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (1.5.0)
Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (26.0)
Requirement already satisfied: pillow>=8 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (12.1.1)
Requirement already satisfied: pyparsing>=3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (3.3.2)
Requirement already satisfied: python-dateutil>=2.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (2.9.0.post0)
Requirement already satisfied: certifi in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from pyproj~=3.6->rastertoolkit>=0.4.9->laser.measles==0.9.2) (2026.2.25)
Requirement already satisfied: scipy>=1.10.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from scikit-learn~=1.6->rastertoolkit>=0.4.9->laser.measles==0.9.2) (1.17.1)
Collecting joblib>=1.3.0 (from scikit-learn~=1.6->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7b/91/984aca2ec129e2757d1e4e3c81c3fcda9d0f85b74670a094cc443d9ee949/joblib-1.5.3-py3-none-any.whl (309 kB)
Collecting threadpoolctl>=3.2.0 (from scikit-learn~=1.6->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/32/d5/f9a850d79b0851d1d4ef6456097579a9005b31fea68726a4ae5f2d82ddd9/threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
Collecting imagecodecs>=2025.11.11 (from tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8f/29/93ea9cbab7f57b4e60480c51fc51d8e138e399d11797c981d5f6e79f9832/imagecodecs-2026.3.6-cp311-abi3-manylinux_2_28_x86_64.whl (26.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 26.5/26.5 MB 15.0 MB/s  0:00:01
Requirement already satisfied: defusedxml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2) (0.7.1)
Collecting lxml (from tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c6/d1/232b3309a02d60f11e71857778bfcd4acbdb86c07db8260caf7d008b08f8/lxml-6.0.2-cp312-cp312-manylinux_2_26_x86_64.manylinux_2_28_x86_64.whl (5.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.3/5.3 MB 15.1 MB/s  0:00:00
Collecting zarr>=3.1.3 (from tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/de/7c/ba8ca8cbe9dbef8e83a95fc208fed8e6686c98b4719aaa0aa7f3d31fe390/zarr-3.1.6-py3-none-any.whl (295 kB)
Collecting fsspec (from tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e6/ab/fb21f4c939bb440104cc2b396d3be1d9b7a9fd3c6c2a53d98c45b3d7c954/fsspec-2026.2.0-py3-none-any.whl (202 kB)
Collecting kerchunk (from tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e0/96/355144a51c7dd7444e7550b26addfce45f31bc59c4a258d6efc84f585af4/kerchunk-0.2.9-py3-none-any.whl (66 kB)
Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from python-dateutil>=2.7->matplotlib->laser-core>=1.0.0->laser.measles==0.9.2) (1.17.0)
Requirement already satisfied: charset_normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from requests>=2.32.3->laser.measles==0.9.2) (3.4.6)
Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from requests>=2.32.3->laser.measles==0.9.2) (3.11)
Requirement already satisfied: urllib3<3,>=1.26 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from requests>=2.32.3->laser.measles==0.9.2) (2.6.3)
Requirement already satisfied: openpyxl in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (3.1.5)
Requirement already satisfied: xlsxwriter in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (3.2.9)
Requirement already satisfied: psutil in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (7.2.2)
Requirement already satisfied: dill in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (0.4.1)
Requirement already satisfied: zstandard in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (0.25.0)
Requirement already satisfied: multiprocess in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (0.70.19)
Requirement already satisfied: jsonpickle in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (4.1.1)
Requirement already satisfied: pyyaml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (6.0.3)
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (82.0.1)
Requirement already satisfied: gitpython in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (3.1.46)
Requirement already satisfied: jellyfish in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (1.2.1)
Requirement already satisfied: tqdm in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (4.67.3)
Requirement already satisfied: memory_profiler in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (0.61.0)
Requirement already satisfied: line_profiler in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from sciris>=3.2.1->laser.measles==0.9.2) (5.0.2)
Collecting shellingham>=1.3.0 (from typer>=0.12.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e0/f9/0595336914c5619e5f28a1fb793285925a8cd4b432c9da0a987836c7f822/shellingham-1.5.4-py2.py3-none-any.whl (9.8 kB)
Collecting rich>=12.3.0 (from typer>=0.12.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/14/25/b208c5683343959b670dc001595f2f3737e051da617f66c31f7c4fa93abc/rich-14.3.3-py3-none-any.whl (310 kB)
Collecting annotated-doc>=0.0.2 (from typer>=0.12.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1e/d3/26bf1008eb3d2daa8ef4cacc7f3bfdc11818d111f7e2d0201bc6e3b49d45/annotated_doc-0.0.4-py3-none-any.whl (5.3 kB)
Requirement already satisfied: markdown-it-py>=2.2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from rich>=12.3.0->typer>=0.12.0->laser.measles==0.9.2) (4.0.0)
Requirement already satisfied: pygments<3.0.0,>=2.13.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from rich>=12.3.0->typer>=0.12.0->laser.measles==0.9.2) (2.19.2)
Requirement already satisfied: mdurl~=0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from markdown-it-py>=2.2.0->rich>=12.3.0->typer>=0.12.0->laser.measles==0.9.2) (0.1.2)
Collecting donfig>=0.8 (from zarr>=3.1.3->tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0c/d5/c5db1ea3394c6e1732fb3286b3bd878b59507a8f77d32a2cebda7d7b7cd4/donfig-0.8.1.post1-py3-none-any.whl (21 kB)
Collecting google-crc32c>=1.5 (from zarr>=3.1.3->tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ce/a9/a780cc66f86335a6019f557a8aaca8fbb970728f0efd2430d15ff1beae0e/google_crc32c-1.8.0-cp312-cp312-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
Collecting numcodecs>=0.14 (from zarr>=3.1.3->tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fb/53/78c98ef5c8b2b784453487f3e4d6c017b20747c58b470393e230c78d18e8/numcodecs-0.16.5-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.2/9.2 MB 15.0 MB/s  0:00:00
Collecting pyogrio>=0.7.2 (from geopandas->laser-core>=1.0.0->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/36/f7/cf8bec9024625947e1a71441906f60a5fa6f9e4c441c4428037e73b1fcc8/pyogrio-0.12.1-cp312-cp312-manylinux_2_28_x86_64.whl (32.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 32.5/32.5 MB 14.9 MB/s  0:00:02
Requirement already satisfied: gitdb<5,>=4.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from gitpython->sciris>=3.2.1->laser.measles==0.9.2) (4.0.12)
Requirement already satisfied: smmap<6,>=3.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from gitdb<5,>=4.0.1->gitpython->sciris>=3.2.1->laser.measles==0.9.2) (5.0.3)
Collecting ujson (from kerchunk->tifffile[all]~=2025.0->rastertoolkit>=0.4.9->laser.measles==0.9.2)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/34/c9/c5f236af5abe06b720b40b88819d00d10182d2247b1664e487b3ed9229cf/ujson-5.12.0-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (57 kB)
Requirement already satisfied: et-xmlfile in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages (from openpyxl->sciris>=3.2.1->laser.measles==0.9.2) (2.0.0)
Building wheels for collected packages: laser.measles
  Building wheel for laser.measles (pyproject.toml): started
  Building wheel for laser.measles (pyproject.toml): finished with status 'done'
  Created wheel for laser.measles: filename=laser_measles-0.9.2-py3-none-any.whl size=137874 sha256=3f36ecd9a055e82e93f907dae8f295cc8a8a17d203c214363a31d6f9ebf09dfd
  Stored in directory: /tmp/pip-ephem-wheel-cache-vsielg8c/wheels/98/1b/2e/22031bac211e2f10623c5778bd7805d7743c435706d397dde3
Successfully built laser.measles
Installing collected packages: appdirs, uv, ujson, tifffile, threadpoolctl, shellingham, shapely, pyvd, pyshp, pyproj, pyogrio, pycountry, pyarrow, polars-runtime-32, numcodecs, lxml, llvmlite, joblib, imagecodecs, h5py, graphemeu, google-crc32c, fsspec, donfig, diskcache, click, annotated-doc, about-time, zarr, scikit-learn, rich, polars, numba, alive-progress, typer, patito, kerchunk, geopandas, laser-core, rastertoolkit, laser.measles

Successfully installed about-time-4.2.1 alive-progress-3.3.0 annotated-doc-0.0.4 appdirs-1.4.4 click-8.3.1 diskcache-5.6.3 donfig-0.8.1.post1 fsspec-2026.2.0 geopandas-1.1.3 google-crc32c-1.8.0 graphemeu-0.7.2 h5py-3.16.0 imagecodecs-2026.3.6 joblib-1.5.3 kerchunk-0.2.9 laser-core-1.0.1 laser.measles-0.9.2 llvmlite-0.46.0 lxml-6.0.2 numba-0.64.0 numcodecs-0.16.5 patito-0.8.6 polars-1.39.3 polars-runtime-32-1.39.3 pyarrow-23.0.1 pycountry-26.2.16 pyogrio-0.12.1 pyproj-3.7.2 pyshp-3.0.3 pyvd-1.0.1 rastertoolkit-0.4.9 rich-14.3.3 scikit-learn-1.8.0 shapely-2.1.2 shellingham-1.5.4 threadpoolctl-3.6.0 tifffile-2025.12.20 typer-0.24.1 ujson-5.12.0 uv-0.11.1 zarr-3.1.6

[rtd-command-info] start-time: 2026-03-26T02:43:18.348129Z, end-time: 2026-03-26T02:43:23.327271Z, duration: 4, exit-code: 0
python docs/tutorials/convert_tutorials.py
[jupytext] Reading tut_basic_model.py in format py
[jupytext] Writing tut_basic_model.ipynb
[jupytext] Reading tut_spatial_mixing.py in format py
[jupytext] Writing tut_spatial_mixing.ipynb
[jupytext] Reading tut_vaccination.py in format py
[jupytext] Writing tut_vaccination.ipynb
[jupytext] Reading tut_traveling_waves.py in format py
[jupytext] Writing tut_traveling_waves.ipynb
[jupytext] Reading tut_pydantic_component_parameters.py in format py
[jupytext] Writing tut_pydantic_component_parameters.ipynb
[jupytext] Reading tut_abm_intro.py in format py
[jupytext] Writing tut_abm_intro.ipynb
[jupytext] Reading tut_model_structure.py in format py
[jupytext] Writing tut_model_structure.ipynb
[jupytext] Reading tut_random_numbers.py in format py
[jupytext] Writing tut_random_numbers.ipynb
[jupytext] Reading tut_scenarios.py in format py
[jupytext] Writing tut_scenarios.ipynb
[jupytext] Reading tut_quickstart_hello_world.py in format py
[jupytext] Writing tut_quickstart_hello_world.ipynb
[jupytext] Reading tut_state_arrays.py in format py
[jupytext] Writing tut_state_arrays.ipynb
[jupytext] Reading tut_abm_vital_dynamics.py in format py
[jupytext] Writing tut_abm_vital_dynamics.ipynb
[jupytext] Reading tut_creating_component.py in format py
[jupytext] Writing tut_creating_component.ipynb
Converting tut_basic_model.py to notebook...
Successfully converted tut_basic_model.py
Converting tut_spatial_mixing.py to notebook...
Successfully converted tut_spatial_mixing.py
Converting tut_vaccination.py to notebook...
Successfully converted tut_vaccination.py
Converting tut_traveling_waves.py to notebook...
Successfully converted tut_traveling_waves.py
Converting tut_pydantic_component_parameters.py to notebook...
Successfully converted tut_pydantic_component_parameters.py
Converting tut_abm_intro.py to notebook...
Successfully converted tut_abm_intro.py
Converting tut_model_structure.py to notebook...
Successfully converted tut_model_structure.py
Converting tut_random_numbers.py to notebook...
Successfully converted tut_random_numbers.py
Converting tut_scenarios.py to notebook...
Successfully converted tut_scenarios.py
Converting tut_quickstart_hello_world.py to notebook...
Successfully converted tut_quickstart_hello_world.py
Converting tut_state_arrays.py to notebook...
Successfully converted tut_state_arrays.py
Converting tut_abm_vital_dynamics.py to notebook...
Successfully converted tut_abm_vital_dynamics.py
Converting tut_creating_component.py to notebook...
Successfully converted tut_creating_component.py
Successfully converted 13 tutorial files to notebooks

[rtd-command-info] start-time: 2026-03-26T02:43:23.470779Z, end-time: 2026-03-26T02:43:23.505445Z, duration: 0, exit-code: 0
cat docs/conf.py
#
# Configuration file for the Sphinx documentation builder.

import os

import sciris as sc

on_rtd = os.environ.get("READTHEDOCS") == "True"


# -- Project information -----------------------------------------------------

project = "laser-measles"
copyright = f"2024 - {sc.now().year}, Bill & Melinda Gates Foundation. All rights reserved."

# The short X.Y version
version = release = "0.9.2"


# -- General configuration ---------------------------------------------------

# Add any Sphinx extension module names here
extensions = [
    "sphinx.ext.autodoc",  # Core Sphinx library for auto html doc generation from docstrings
    "sphinx.ext.autosummary",  # Create neat summary tables for modules/classes/methods etc -- causes warnings with Napoleon however
    "sphinx.ext.intersphinx",
    "sphinx.ext.viewcode",  # Add a link to the Python source code for classes, functions etc.
    "sphinx.ext.napoleon",
    "sphinx.ext.autosectionlabel",
    # "sphinx.ext.doctest",  # Enable doctest builder
    "sphinx_autodoc_typehints",  # Automatically document param types (less noise in class signature)
    "sphinx_design",  # Add e.g. grid layout
    "sphinx_search.extension",  # search across multiple docsets in domain
    "nbsphinx",
    "sphinxcontrib.autodoc_pydantic",
]

# Use Google docstrings
napoleon_google_docstring = True

# Configure autosummary
autosummary_generate = True  # Turn on sphinx.ext.autosummary
autosummary_ignore_module_all = False  # Respect __all__
autodoc_member_order = "bysource"  # Keep original ordering
add_module_names = False  # NB, does not work
autodoc_inherit_docstrings = True  # Allow subclasses to inherit docs from parent classes
autoclass_content = "both"  # Render both class docstring AND __init__ docstring in API pages

# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

# Syntax highlighting style
pygments_style = "sphinx"
modindex_common_prefix = ["laser.measles."]

# List of patterns, relative to source directory, to exclude
exclude_patterns = [
    "_build",
    "Thumbs.db",
    ".DS_Store",
    "**.ipynb_checkpoints",
    "tutorials/not_ready/**",
    "tutorials/convert_tutorials.ipynb",
]

# Suppress certain warnings
suppress_warnings = ["autosectionlabel.*"]

# Configure pydantic


# -- Options for HTML output -------------------------------------------------

html_theme = "pydata_sphinx_theme"
html_theme_options = {
    "collapse_navigation": False,
    "navigation_depth": 3,
    "show_prev_next": True,
    "icon_links": [
        {"name": "Web", "url": "https://laser-measles.readthedocs.io/en/latest/", "icon": "fas fa-home"},
        {
            "name": "GitHub",
            "url": "https://github.com/InstituteforDiseaseModeling/laser-measles",
            "icon": "fab fa-github-square",
        },
    ],
    "navbar_end": ["theme-switcher", "navbar-icon-links"],
    "secondary_sidebar_items": [],
    "header_links_before_dropdown": 5,
    "footer_start": ["copyright", "footer_start"],
    "footer_end": ["theme-version", "footer_end"],
}
html_sidebars = {
    "**": ["page-toc"],
}
html_logo = "images/idm-logo-transparent.png"
html_favicon = "images/favicon.ico"
html_static_path = ["_static"]
html_baseurl = "https://docs.idmod.org/"
html_context = {
    "rtd_url": "https://docs.idmod.org/",
    "versions_dropdown": {
        "latest": "devel (latest)",
        "stable": "current (stable)",
    },
    "default_mode": "light",
}
# Add any extra paths that contain custom files
if not on_rtd:
    html_extra_path = ["robots.txt"]


# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
html_last_updated_fmt = "%Y-%b-%d"
html_show_sourcelink = True
html_show_sphinx = False
html_copy_source = False
htmlhelp_basename = "laser-measles"


# Add customizations
def setup(app):
    app.add_css_file("theme_overrides.css")


# Modify this to not rerun the Jupyter notebook cells -- usually set by build_docs
nbsphinx_execute = "auto"
nbsphinx_timeout = 600
nbsphinx_allow_errors = True
nbsphinx_execute_arguments = [
    "--InlineBackend.figure_formats={'svg', 'pdf'}",
    "--InlineBackend.rc={'figure.dpi': 96}",
]

# OpenSearch options
html_use_opensearch = "docs.idmod.org/projects/laser-measles/en/latest"

# -- RTD Sphinx search for searching across the entire domain, default child -------------
if os.environ.get("READTHEDOCS") == "True":
    search_project_parent = "institute-for-disease-modeling-idm"
    search_project = os.environ["READTHEDOCS_PROJECT"]
    search_version = os.environ["READTHEDOCS_VERSION"]

    rtd_sphinx_search_default_filter = f"subprojects:{search_project_parent}/{search_version}"

    rtd_sphinx_search_filters = {
        "Search this project": f"project:{search_project}/{search_version}",
        "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}",
    }

# -- Linkcheck configuration -------------------------------------------------
# Configuration for sphinx-build -b linkcheck

# URLs that should be ignored during link checking
linkcheck_ignore = [
    r"https://chatgpt\.com/g/g-674f5fd33aec8191bcdc1a2736fb7c8d-laser-gpt-jenner",  # Requires authentication
    r"https://.*\.idmod\.org/.*",  # Internal IDM links that may require auth
    r"https://.*\.gatesfoundation\.org/.*",  # Gates Foundation internal links
    r"https://example.com/restricted-path",
    r"https://github.com/InstituteforDiseaseModeling/laser-mcp/blob/main/README.md",  # 404 error
    r"https://chatgpt.com/g/g-678ae681f5b48191b3e91619e649e598-jenner-measles",  # 404 error
    r"https://chatgpt.com/g/g-674f5fd33aec8191bcdc1a2736fb7c8d-laser-gpt-jenner",  # likely restricted
    r"https://laser.idmod.org/laser-generic/",  # likely restricted
    r"https://codecov\.io/.*",  # External service, may return 502
]

# HTTP status codes that should be considered as "working" (not broken)
# 403 = Forbidden (requires authentication)
# 401 = Unauthorized (requires authentication)
linkcheck_allowed_redirects = {
    r"https://.*\.idmod\.org/.*": r".*",
    r"https://.*\.gatesfoundation\.org/.*": r".*",
}

# Timeout for link checking (in seconds)
linkcheck_timeout = 30

# Number of workers for parallel link checking
linkcheck_workers = 5

# Whether to check anchors in links
linkcheck_anchors = False

# Whether to check anchors in relative links
linkcheck_anchors_ignore = [
    r"#.*",  # Ignore all anchor links
]

# Retry count for failed links
linkcheck_retries = 2

[rtd-command-info] start-time: 2026-03-26T02:43:23.587671Z, end-time: 2026-03-26T02:47:17.680443Z, duration: 234, exit-code: 0
python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
Running Sphinx v9.1.0
Matplotlib is building the font cache; this may take a moment.
loading translations [en]... done
making output directory... done
[autosummary] generating autosummary for: api/index.rst, authors.rst, building_docs.rst, changelog.rst, contributing.rst, index.rst, installation.rst, tutorials.rst, tutorials/README.rst, tutorials/tut_abm_intro.ipynb, ..., tutorials/tut_model_structure.ipynb, tutorials/tut_pydantic_component_parameters.ipynb, tutorials/tut_quickstart_hello_world.ipynb, tutorials/tut_random_numbers.ipynb, tutorials/tut_scenarios.ipynb, tutorials/tut_spatial_mixing.ipynb, tutorials/tut_state_arrays.ipynb, tutorials/tut_traveling_waves.ipynb, tutorials/tut_vaccination.ipynb, usage.rst
[autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.base.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.CaseSurveillanceTracker.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.ConstantPopProcess.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.DiseaseProcess.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.FadeOutTracker.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.ImportationPressureProcess.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.InfectionProcess.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.InfectionSeedingProcess.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.InitializeEquilibriumStatesProcess.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.components.NoBirthsProcess.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.mixing.base.BaseMixing.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.mixing.competing_destinations.CompetingDestinationsMixing.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.mixing.gravity.GravityMixing.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.mixing.radiation.RadiationMixing.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.mixing.stouffer.StoufferMixing.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.satellites_scenario.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.single_patch_scenario.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.synthetic.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.two_cluster_scenario.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.two_patch_scenario.rst
[autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.base.BaseABMScenario.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.base.BaseABMScenarioSchema.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.base.BaseScenario.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.base.PatchLaserFrame.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.base.PeopleLaserFrame.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.model.ABMModel.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.model.Model.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.params.ABMParams.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.params.Params.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.abm.utils.add_at.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.compartmental.base.BaseScenarioSchema.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.compartmental.base.PatchLaserFrame.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.compartmental.model.CompartmentalModel.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.compartmental.model.Model.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.compartmental.params.CompartmentalParams.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.compartmental.params.Params.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.synthetic.satellites_scenario.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.synthetic.single_patch_scenario.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.synthetic.two_cluster_scenario.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.scenarios.synthetic.two_patch_scenario.rst
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/_readthedocs/html/_static/nbsphinx-code-cells.css
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 23 source files that are out of date
updating environment: [new config] 134 added, 0 changed, 0 removed
reading sources... [  1%] api/_autosummary/laser.measles.abm.base
reading sources... [  1%] api/_autosummary/laser.measles.abm.base.BaseABMScenario
reading sources... [  2%] api/_autosummary/laser.measles.abm.base.BaseABMScenarioSchema
reading sources... [  3%] api/_autosummary/laser.measles.abm.base.BaseScenario
reading sources... [  4%] api/_autosummary/laser.measles.abm.base.PatchLaserFrame
reading sources... [  4%] api/_autosummary/laser.measles.abm.base.PeopleLaserFrame
reading sources... [  5%] api/_autosummary/laser.measles.abm.components.CaseSurveillanceTracker
reading sources... [  6%] api/_autosummary/laser.measles.abm.components.ConstantPopProcess
reading sources... [  7%] api/_autosummary/laser.measles.abm.components.DiseaseProcess
reading sources... [  7%] api/_autosummary/laser.measles.abm.components.FadeOutTracker
reading sources... [  8%] api/_autosummary/laser.measles.abm.components.ImportationPressureProcess
reading sources... [  9%] api/_autosummary/laser.measles.abm.components.InfectionProcess
reading sources... [ 10%] api/_autosummary/laser.measles.abm.components.InfectionSeedingProcess
reading sources... [ 10%] api/_autosummary/laser.measles.abm.components.InitializeEquilibriumStatesProcess
reading sources... [ 11%] api/_autosummary/laser.measles.abm.components.NoBirthsProcess
reading sources... [ 12%] api/_autosummary/laser.measles.abm.components.PopulationTracker
reading sources... [ 13%] api/_autosummary/laser.measles.abm.components.SIACalendarProcess
reading sources... [ 13%] api/_autosummary/laser.measles.abm.components.StateTracker
reading sources... [ 14%] api/_autosummary/laser.measles.abm.components.TransmissionProcess
reading sources... [ 15%] api/_autosummary/laser.measles.abm.components.VitalDynamicsProcess
reading sources... [ 16%] api/_autosummary/laser.measles.abm.model
reading sources... [ 16%] api/_autosummary/laser.measles.abm.model.ABMModel
reading sources... [ 17%] api/_autosummary/laser.measles.abm.model.Model
reading sources... [ 18%] api/_autosummary/laser.measles.abm.params
reading sources... [ 19%] api/_autosummary/laser.measles.abm.params.ABMParams
reading sources... [ 19%] api/_autosummary/laser.measles.abm.params.Params
reading sources... [ 20%] api/_autosummary/laser.measles.abm.utils
reading sources... [ 21%] api/_autosummary/laser.measles.abm.utils.add_at
reading sources... [ 22%] api/_autosummary/laser.measles.abm.utils.calc_capacity
reading sources... [ 22%] api/_autosummary/laser.measles.abm.utils.calc_distances
reading sources... [ 23%] api/_autosummary/laser.measles.abm.utils.seed_infections_in_patch
reading sources... [ 24%] api/_autosummary/laser.measles.abm.utils.seed_infections_randomly
reading sources... [ 25%] api/_autosummary/laser.measles.abm.utils.seed_infections_randomly_SI
reading sources... [ 25%] api/_autosummary/laser.measles.abm.utils.set_initial_susceptibility_in_patch
reading sources... [ 26%] api/_autosummary/laser.measles.abm.utils.set_initial_susceptibility_randomly
reading sources... [ 27%] api/_autosummary/laser.measles.base.BaseComponent
reading sources... [ 28%] api/_autosummary/laser.measles.base.BaseLaserModel
reading sources... [ 28%] api/_autosummary/laser.measles.biweekly.base
reading sources... [ 29%] api/_autosummary/laser.measles.biweekly.base.BaseBiweeklyScenario
reading sources... [ 30%] api/_autosummary/laser.measles.biweekly.base.BaseScenario
reading sources... [ 31%] api/_autosummary/laser.measles.biweekly.base.BaseScenarioSchema
reading sources... [ 31%] api/_autosummary/laser.measles.biweekly.base.PatchLaserFrame
reading sources... [ 32%] api/_autosummary/laser.measles.biweekly.components.CaseSurveillanceTracker
reading sources... [ 33%] api/_autosummary/laser.measles.biweekly.components.ConstantPopProcess
reading sources... [ 34%] api/_autosummary/laser.measles.biweekly.components.FadeOutTracker
reading sources... [ 34%] api/_autosummary/laser.measles.biweekly.components.ImportationPressureProcess
reading sources... [ 35%] api/_autosummary/laser.measles.biweekly.components.InfectionProcess
reading sources... [ 36%] api/_autosummary/laser.measles.biweekly.components.InfectionSeedingProcess
reading sources... [ 37%] api/_autosummary/laser.measles.biweekly.components.InitializeEquilibriumStatesProcess
reading sources... [ 37%] api/_autosummary/laser.measles.biweekly.components.PopulationTracker
reading sources... [ 38%] api/_autosummary/laser.measles.biweekly.components.SIACalendarProcess
reading sources... [ 39%] api/_autosummary/laser.measles.biweekly.components.StateTracker
reading sources... [ 40%] api/_autosummary/laser.measles.biweekly.components.VitalDynamicsProcess
reading sources... [ 40%] api/_autosummary/laser.measles.biweekly.model
reading sources... [ 41%] api/_autosummary/laser.measles.biweekly.model.BiweeklyModel
reading sources... [ 42%] api/_autosummary/laser.measles.biweekly.model.Model
reading sources... [ 43%] api/_autosummary/laser.measles.biweekly.params
reading sources... [ 43%] api/_autosummary/laser.measles.biweekly.params.BiweeklyParams
reading sources... [ 44%] api/_autosummary/laser.measles.biweekly.params.Params
reading sources... [ 45%] api/_autosummary/laser.measles.compartmental.base
reading sources... [ 46%] api/_autosummary/laser.measles.compartmental.base.BaseCompartmentalScenario
reading sources... [ 46%] api/_autosummary/laser.measles.compartmental.base.BaseScenario
reading sources... [ 47%] api/_autosummary/laser.measles.compartmental.base.BaseScenarioSchema
reading sources... [ 48%] api/_autosummary/laser.measles.compartmental.base.PatchLaserFrame
reading sources... [ 49%] api/_autosummary/laser.measles.compartmental.components.CaseSurveillanceTracker
reading sources... [ 49%] api/_autosummary/laser.measles.compartmental.components.ConstantPopProcess
reading sources... [ 50%] api/_autosummary/laser.measles.compartmental.components.FadeOutTracker
reading sources... [ 51%] api/_autosummary/laser.measles.compartmental.components.ImportationPressureProcess
reading sources... [ 51%] api/_autosummary/laser.measles.compartmental.components.InfectionProcess
reading sources... [ 52%] api/_autosummary/laser.measles.compartmental.components.InfectionSeedingProcess
reading sources... [ 53%] api/_autosummary/laser.measles.compartmental.components.InitializeEquilibriumStatesProcess
reading sources... [ 54%] api/_autosummary/laser.measles.compartmental.components.PopulationTracker
reading sources... [ 54%] api/_autosummary/laser.measles.compartmental.components.SIACalendarProcess
reading sources... [ 55%] api/_autosummary/laser.measles.compartmental.components.StateTracker
reading sources... [ 56%] api/_autosummary/laser.measles.compartmental.components.VitalDynamicsProcess
reading sources... [ 57%] api/_autosummary/laser.measles.compartmental.model
reading sources... [ 57%] api/_autosummary/laser.measles.compartmental.model.CompartmentalModel
reading sources... [ 58%] api/_autosummary/laser.measles.compartmental.model.Model
reading sources... [ 59%] api/_autosummary/laser.measles.compartmental.params
reading sources... [ 60%] api/_autosummary/laser.measles.compartmental.params.CompartmentalParams
reading sources... [ 60%] api/_autosummary/laser.measles.compartmental.params.Params
reading sources... [ 61%] api/_autosummary/laser.measles.components.BaseCaseSurveillanceTracker
reading sources... [ 62%] api/_autosummary/laser.measles.components.BaseConstantPopProcess
reading sources... [ 63%] api/_autosummary/laser.measles.components.BaseFadeOutTracker
reading sources... [ 63%] api/_autosummary/laser.measles.components.BaseInfectionProcess
reading sources... [ 64%] api/_autosummary/laser.measles.components.BaseInitializeEquilibriumStatesProcess
reading sources... [ 65%] api/_autosummary/laser.measles.components.BasePopulationTracker
reading sources... [ 66%] api/_autosummary/laser.measles.components.BaseStateTracker
reading sources... [ 66%] api/_autosummary/laser.measles.components.BaseVitalDynamicsProcess
reading sources... [ 67%] api/_autosummary/laser.measles.components.component
reading sources... [ 68%] api/_autosummary/laser.measles.components.create_component
reading sources... [ 69%] api/_autosummary/laser.measles.create_component
reading sources... [ 69%] api/_autosummary/laser.measles.demographics.GADMShapefile
reading sources... [ 70%] api/_autosummary/laser.measles.demographics.RasterPatchGenerator
reading sources... [ 71%] api/_autosummary/laser.measles.demographics.RasterPatchParams
reading sources... [ 72%] api/_autosummary/laser.measles.demographics.get_shapefile_dataframe
reading sources... [ 72%] api/_autosummary/laser.measles.demographics.plot_shapefile_dataframe
reading sources... [ 73%] api/_autosummary/laser.measles.mixing.base.BaseMixing
reading sources... [ 74%] api/_autosummary/laser.measles.mixing.competing_destinations.CompetingDestinationsMixing
reading sources... [ 75%] api/_autosummary/laser.measles.mixing.gravity.GravityMixing
reading sources... [ 75%] api/_autosummary/laser.measles.mixing.radiation.RadiationMixing
reading sources... [ 76%] api/_autosummary/laser.measles.mixing.stouffer.StoufferMixing
reading sources... [ 77%] api/_autosummary/laser.measles.scenarios.satellites_scenario
reading sources... [ 78%] api/_autosummary/laser.measles.scenarios.single_patch_scenario
reading sources... [ 78%] api/_autosummary/laser.measles.scenarios.synthetic
reading sources... [ 79%] api/_autosummary/laser.measles.scenarios.synthetic.satellites_scenario
reading sources... [ 80%] api/_autosummary/laser.measles.scenarios.synthetic.single_patch_scenario
reading sources... [ 81%] api/_autosummary/laser.measles.scenarios.synthetic.two_cluster_scenario
reading sources... [ 81%] api/_autosummary/laser.measles.scenarios.synthetic.two_patch_scenario
reading sources... [ 82%] api/_autosummary/laser.measles.scenarios.two_cluster_scenario
reading sources... [ 83%] api/_autosummary/laser.measles.scenarios.two_patch_scenario
reading sources... [ 84%] api/index
reading sources... [ 84%] authors
reading sources... [ 85%] building_docs
reading sources... [ 86%] changelog
reading sources... [ 87%] contributing
reading sources... [ 87%] index
reading sources... [ 88%] installation
reading sources... [ 89%] tutorials
reading sources... [ 90%] tutorials/README
reading sources... [ 90%] tutorials/tut_abm_intro
reading sources... [ 91%] tutorials/tut_abm_vital_dynamics
reading sources... [ 92%] tutorials/tut_basic_model
reading sources... [ 93%] tutorials/tut_creating_component
reading sources... [ 93%] tutorials/tut_model_structure
reading sources... [ 94%] tutorials/tut_pydantic_component_parameters
reading sources... [ 95%] tutorials/tut_quickstart_hello_world
reading sources... [ 96%] tutorials/tut_random_numbers
reading sources... [ 96%] tutorials/tut_scenarios
reading sources... [ 97%] tutorials/tut_spatial_mixing
reading sources... [ 98%] tutorials/tut_state_arrays
reading sources... [ 99%] tutorials/tut_traveling_waves
reading sources... [ 99%] tutorials/tut_vaccination
reading sources... [100%] usage

WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
WARNING: :1: (WARNING/2) Explicit markup ends without a blank line; unexpected unindent. [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/usage.rst:956: WARNING: Title underline too short.

10. Retrieving results from ``StateTracker``
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [docutils]
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/authors.rst: WARNING: document isn't included in any toctree [toc.not_included]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/building_docs.rst: WARNING: document isn't included in any toctree [toc.not_included]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/changelog.rst: WARNING: document isn't included in any toctree [toc.not_included]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/contributing.rst: WARNING: document isn't included in any toctree [toc.not_included]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/api/_autosummary/laser.measles.biweekly.components.FadeOutTracker.rst: document is referenced in multiple toctrees: ['api/index', 'api/index'], selecting: api/index <- api/_autosummary/laser.measles.biweekly.components.FadeOutTracker
done
preparing documents... done
copying assets... 
copying static files... 
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/_readthedocs/html/_static/basic.css
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/_readthedocs/html/_static/language_data.js
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/_readthedocs/html/_static/documentation_options.js
copying static files: done
copying extra files... 
copying extra files: done
copying assets: done
writing output... [  1%] api/_autosummary/laser.measles.abm.base
writing output... [  1%] api/_autosummary/laser.measles.abm.base.BaseABMScenario
writing output... [  2%] api/_autosummary/laser.measles.abm.base.BaseABMScenarioSchema
writing output... [  3%] api/_autosummary/laser.measles.abm.base.BaseScenario
writing output... [  4%] api/_autosummary/laser.measles.abm.base.PatchLaserFrame
writing output... [  4%] api/_autosummary/laser.measles.abm.base.PeopleLaserFrame
writing output... [  5%] api/_autosummary/laser.measles.abm.components.CaseSurveillanceTracker
writing output... [  6%] api/_autosummary/laser.measles.abm.components.ConstantPopProcess
writing output... [  7%] api/_autosummary/laser.measles.abm.components.DiseaseProcess
writing output... [  7%] api/_autosummary/laser.measles.abm.components.FadeOutTracker
writing output... [  8%] api/_autosummary/laser.measles.abm.components.ImportationPressureProcess
writing output... [  9%] api/_autosummary/laser.measles.abm.components.InfectionProcess
writing output... [ 10%] api/_autosummary/laser.measles.abm.components.InfectionSeedingProcess
writing output... [ 10%] api/_autosummary/laser.measles.abm.components.InitializeEquilibriumStatesProcess
writing output... [ 11%] api/_autosummary/laser.measles.abm.components.NoBirthsProcess
writing output... [ 12%] api/_autosummary/laser.measles.abm.components.PopulationTracker
writing output... [ 13%] api/_autosummary/laser.measles.abm.components.SIACalendarProcess
writing output... [ 13%] api/_autosummary/laser.measles.abm.components.StateTracker
writing output... [ 14%] api/_autosummary/laser.measles.abm.components.TransmissionProcess
writing output... [ 15%] api/_autosummary/laser.measles.abm.components.VitalDynamicsProcess
writing output... [ 16%] api/_autosummary/laser.measles.abm.model
writing output... [ 16%] api/_autosummary/laser.measles.abm.model.ABMModel
writing output... [ 17%] api/_autosummary/laser.measles.abm.model.Model
writing output... [ 18%] api/_autosummary/laser.measles.abm.params
writing output... [ 19%] api/_autosummary/laser.measles.abm.params.ABMParams
writing output... [ 19%] api/_autosummary/laser.measles.abm.params.Params
writing output... [ 20%] api/_autosummary/laser.measles.abm.utils
writing output... [ 21%] api/_autosummary/laser.measles.abm.utils.add_at
writing output... [ 22%] api/_autosummary/laser.measles.abm.utils.calc_capacity
writing output... [ 22%] api/_autosummary/laser.measles.abm.utils.calc_distances
writing output... [ 23%] api/_autosummary/laser.measles.abm.utils.seed_infections_in_patch
writing output... [ 24%] api/_autosummary/laser.measles.abm.utils.seed_infections_randomly
writing output... [ 25%] api/_autosummary/laser.measles.abm.utils.seed_infections_randomly_SI
writing output... [ 25%] api/_autosummary/laser.measles.abm.utils.set_initial_susceptibility_in_patch
writing output... [ 26%] api/_autosummary/laser.measles.abm.utils.set_initial_susceptibility_randomly
writing output... [ 27%] api/_autosummary/laser.measles.base.BaseComponent
writing output... [ 28%] api/_autosummary/laser.measles.base.BaseLaserModel
writing output... [ 28%] api/_autosummary/laser.measles.biweekly.base
writing output... [ 29%] api/_autosummary/laser.measles.biweekly.base.BaseBiweeklyScenario
writing output... [ 30%] api/_autosummary/laser.measles.biweekly.base.BaseScenario
writing output... [ 31%] api/_autosummary/laser.measles.biweekly.base.BaseScenarioSchema
writing output... [ 31%] api/_autosummary/laser.measles.biweekly.base.PatchLaserFrame
writing output... [ 32%] api/_autosummary/laser.measles.biweekly.components.CaseSurveillanceTracker
writing output... [ 33%] api/_autosummary/laser.measles.biweekly.components.ConstantPopProcess
writing output... [ 34%] api/_autosummary/laser.measles.biweekly.components.FadeOutTracker
writing output... [ 34%] api/_autosummary/laser.measles.biweekly.components.ImportationPressureProcess
writing output... [ 35%] api/_autosummary/laser.measles.biweekly.components.InfectionProcess
writing output... [ 36%] api/_autosummary/laser.measles.biweekly.components.InfectionSeedingProcess
writing output... [ 37%] api/_autosummary/laser.measles.biweekly.components.InitializeEquilibriumStatesProcess
writing output... [ 37%] api/_autosummary/laser.measles.biweekly.components.PopulationTracker
writing output... [ 38%] api/_autosummary/laser.measles.biweekly.components.SIACalendarProcess
writing output... [ 39%] api/_autosummary/laser.measles.biweekly.components.StateTracker
writing output... [ 40%] api/_autosummary/laser.measles.biweekly.components.VitalDynamicsProcess
writing output... [ 40%] api/_autosummary/laser.measles.biweekly.model
writing output... [ 41%] api/_autosummary/laser.measles.biweekly.model.BiweeklyModel
writing output... [ 42%] api/_autosummary/laser.measles.biweekly.model.Model
writing output... [ 43%] api/_autosummary/laser.measles.biweekly.params
writing output... [ 43%] api/_autosummary/laser.measles.biweekly.params.BiweeklyParams
writing output... [ 44%] api/_autosummary/laser.measles.biweekly.params.Params
writing output... [ 45%] api/_autosummary/laser.measles.compartmental.base
writing output... [ 46%] api/_autosummary/laser.measles.compartmental.base.BaseCompartmentalScenario
writing output... [ 46%] api/_autosummary/laser.measles.compartmental.base.BaseScenario
writing output... [ 47%] api/_autosummary/laser.measles.compartmental.base.BaseScenarioSchema
writing output... [ 48%] api/_autosummary/laser.measles.compartmental.base.PatchLaserFrame
writing output... [ 49%] api/_autosummary/laser.measles.compartmental.components.CaseSurveillanceTracker
writing output... [ 49%] api/_autosummary/laser.measles.compartmental.components.ConstantPopProcess
writing output... [ 50%] api/_autosummary/laser.measles.compartmental.components.FadeOutTracker
writing output... [ 51%] api/_autosummary/laser.measles.compartmental.components.ImportationPressureProcess
writing output... [ 51%] api/_autosummary/laser.measles.compartmental.components.InfectionProcess
writing output... [ 52%] api/_autosummary/laser.measles.compartmental.components.InfectionSeedingProcess
writing output... [ 53%] api/_autosummary/laser.measles.compartmental.components.InitializeEquilibriumStatesProcess
writing output... [ 54%] api/_autosummary/laser.measles.compartmental.components.PopulationTracker
writing output... [ 54%] api/_autosummary/laser.measles.compartmental.components.SIACalendarProcess
writing output... [ 55%] api/_autosummary/laser.measles.compartmental.components.StateTracker
writing output... [ 56%] api/_autosummary/laser.measles.compartmental.components.VitalDynamicsProcess
writing output... [ 57%] api/_autosummary/laser.measles.compartmental.model
writing output... [ 57%] api/_autosummary/laser.measles.compartmental.model.CompartmentalModel
writing output... [ 58%] api/_autosummary/laser.measles.compartmental.model.Model
writing output... [ 59%] api/_autosummary/laser.measles.compartmental.params
writing output... [ 60%] api/_autosummary/laser.measles.compartmental.params.CompartmentalParams
writing output... [ 60%] api/_autosummary/laser.measles.compartmental.params.Params
writing output... [ 61%] api/_autosummary/laser.measles.components.BaseCaseSurveillanceTracker
writing output... [ 62%] api/_autosummary/laser.measles.components.BaseConstantPopProcess
writing output... [ 63%] api/_autosummary/laser.measles.components.BaseFadeOutTracker
writing output... [ 63%] api/_autosummary/laser.measles.components.BaseInfectionProcess
writing output... [ 64%] api/_autosummary/laser.measles.components.BaseInitializeEquilibriumStatesProcess
writing output... [ 65%] api/_autosummary/laser.measles.components.BasePopulationTracker
writing output... [ 66%] api/_autosummary/laser.measles.components.BaseStateTracker
writing output... [ 66%] api/_autosummary/laser.measles.components.BaseVitalDynamicsProcess
writing output... [ 67%] api/_autosummary/laser.measles.components.component
writing output... [ 68%] api/_autosummary/laser.measles.components.create_component
writing output... [ 69%] api/_autosummary/laser.measles.create_component
writing output... [ 69%] api/_autosummary/laser.measles.demographics.GADMShapefile
writing output... [ 70%] api/_autosummary/laser.measles.demographics.RasterPatchGenerator
writing output... [ 71%] api/_autosummary/laser.measles.demographics.RasterPatchParams
writing output... [ 72%] api/_autosummary/laser.measles.demographics.get_shapefile_dataframe
writing output... [ 72%] api/_autosummary/laser.measles.demographics.plot_shapefile_dataframe
writing output... [ 73%] api/_autosummary/laser.measles.mixing.base.BaseMixing
writing output... [ 74%] api/_autosummary/laser.measles.mixing.competing_destinations.CompetingDestinationsMixing
writing output... [ 75%] api/_autosummary/laser.measles.mixing.gravity.GravityMixing
writing output... [ 75%] api/_autosummary/laser.measles.mixing.radiation.RadiationMixing
writing output... [ 76%] api/_autosummary/laser.measles.mixing.stouffer.StoufferMixing
writing output... [ 77%] api/_autosummary/laser.measles.scenarios.satellites_scenario
writing output... [ 78%] api/_autosummary/laser.measles.scenarios.single_patch_scenario
writing output... [ 78%] api/_autosummary/laser.measles.scenarios.synthetic
writing output... [ 79%] api/_autosummary/laser.measles.scenarios.synthetic.satellites_scenario
writing output... [ 80%] api/_autosummary/laser.measles.scenarios.synthetic.single_patch_scenario
writing output... [ 81%] api/_autosummary/laser.measles.scenarios.synthetic.two_cluster_scenario
writing output... [ 81%] api/_autosummary/laser.measles.scenarios.synthetic.two_patch_scenario
writing output... [ 82%] api/_autosummary/laser.measles.scenarios.two_cluster_scenario
writing output... [ 83%] api/_autosummary/laser.measles.scenarios.two_patch_scenario
writing output... [ 84%] api/index
writing output... [ 84%] authors
writing output... [ 85%] building_docs
writing output... [ 86%] changelog
writing output... [ 87%] contributing
writing output... [ 87%] index
writing output... [ 88%] installation
writing output... [ 89%] tutorials
writing output... [ 90%] tutorials/README
writing output... [ 90%] tutorials/tut_abm_intro
writing output... [ 91%] tutorials/tut_abm_vital_dynamics
writing output... [ 92%] tutorials/tut_basic_model
writing output... [ 93%] tutorials/tut_creating_component
writing output... [ 93%] tutorials/tut_model_structure
writing output... [ 94%] tutorials/tut_pydantic_component_parameters
writing output... [ 95%] tutorials/tut_quickstart_hello_world
writing output... [ 96%] tutorials/tut_random_numbers
writing output... [ 96%] tutorials/tut_scenarios
writing output... [ 97%] tutorials/tut_spatial_mixing
writing output... [ 98%] tutorials/tut_state_arrays
writing output... [ 99%] tutorials/tut_traveling_waves
writing output... [ 99%] tutorials/tut_vaccination
writing output... [100%] usage

/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages/laser/measles/abm/components/process_constant_pop.py:docstring of laser.measles.abm.components.process_constant_pop.ConstantPopProcess:23: WARNING: more than one target found for cross-reference 'DataFrame': laser.measles.abm.base.BaseABMScenarioSchema.DataFrame, laser.measles.biweekly.base.BaseScenarioSchema.DataFrame, laser.measles.compartmental.base.BaseScenarioSchema.DataFrame [ref.python]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages/laser/measles/biweekly/components/process_constant_pop.py:docstring of laser.measles.biweekly.components.process_constant_pop.ConstantPopProcess:23: WARNING: more than one target found for cross-reference 'DataFrame': laser.measles.abm.base.BaseABMScenarioSchema.DataFrame, laser.measles.biweekly.base.BaseScenarioSchema.DataFrame, laser.measles.compartmental.base.BaseScenarioSchema.DataFrame [ref.python]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages/laser/measles/compartmental/components/process_constant_pop.py:docstring of laser.measles.compartmental.components.process_constant_pop.ConstantPopProcess:23: WARNING: more than one target found for cross-reference 'DataFrame': laser.measles.abm.base.BaseABMScenarioSchema.DataFrame, laser.measles.biweekly.base.BaseScenarioSchema.DataFrame, laser.measles.compartmental.base.BaseScenarioSchema.DataFrame [ref.python]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/141/lib/python3.12/site-packages/laser/measles/components/base_constant_pop.py:docstring of laser.measles.components.base_constant_pop.BaseConstantPopProcess:23: WARNING: more than one target found for cross-reference 'DataFrame': laser.measles.abm.base.BaseABMScenarioSchema.DataFrame, laser.measles.biweekly.base.BaseScenarioSchema.DataFrame, laser.measles.compartmental.base.BaseScenarioSchema.DataFrame [ref.python]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/docs/usage.rst:951: WARNING: undefined label: 'api/index:scenarios package' [ref.ref]
generating indices... genindex py-modindex done
copying linked files... 
copying notebooks ... [  8%] tutorials/tut_abm_intro.ipynb
copying notebooks ... [ 15%] tutorials/tut_abm_vital_dynamics.ipynb
copying notebooks ... [ 23%] tutorials/tut_basic_model.ipynb
copying notebooks ... [ 31%] tutorials/tut_creating_component.ipynb
copying notebooks ... [ 38%] tutorials/tut_model_structure.ipynb
copying notebooks ... [ 46%] tutorials/tut_pydantic_component_parameters.ipynb
copying notebooks ... [ 54%] tutorials/tut_quickstart_hello_world.ipynb
copying notebooks ... [ 62%] tutorials/tut_random_numbers.ipynb
copying notebooks ... [ 69%] tutorials/tut_scenarios.ipynb
copying notebooks ... [ 77%] tutorials/tut_spatial_mixing.ipynb
copying notebooks ... [ 85%] tutorials/tut_state_arrays.ipynb
copying notebooks ... [ 92%] tutorials/tut_traveling_waves.ipynb
copying notebooks ... [100%] tutorials/tut_vaccination.ipynb

highlighting module code... [  2%] laser.measles.abm.base
highlighting module code... [  3%] laser.measles.abm.components.process_constant_pop
highlighting module code... [  5%] laser.measles.abm.components.process_disease
highlighting module code... [  6%] laser.measles.abm.components.process_importation_pressure
highlighting module code... [  8%] laser.measles.abm.components.process_infection
highlighting module code... [  9%] laser.measles.abm.components.process_infection_seeding
highlighting module code... [ 11%] laser.measles.abm.components.process_initialize_equilibrium_states
highlighting module code... [ 12%] laser.measles.abm.components.process_no_births
highlighting module code... [ 14%] laser.measles.abm.components.process_sia_calendar
highlighting module code... [ 15%] laser.measles.abm.components.process_transmission
highlighting module code... [ 17%] laser.measles.abm.components.process_vital_dynamics
highlighting module code... [ 18%] laser.measles.abm.components.tracker_case_surveillance
highlighting module code... [ 20%] laser.measles.abm.components.tracker_fadeout
highlighting module code... [ 22%] laser.measles.abm.components.tracker_population
highlighting module code... [ 23%] laser.measles.abm.components.tracker_state
highlighting module code... [ 25%] laser.measles.abm.model
highlighting module code... [ 26%] laser.measles.abm.params
highlighting module code... [ 28%] laser.measles.abm.utils
highlighting module code... [ 29%] laser.measles.base
highlighting module code... [ 31%] laser.measles.biweekly.base
highlighting module code... [ 32%] laser.measles.biweekly.components.process_constant_pop
highlighting module code... [ 34%] laser.measles.biweekly.components.process_importation_pressure
highlighting module code... [ 35%] laser.measles.biweekly.components.process_infection
highlighting module code... [ 37%] laser.measles.biweekly.components.process_infection_seeding
highlighting module code... [ 38%] laser.measles.biweekly.components.process_initialize_equilibrium_states
highlighting module code... [ 40%] laser.measles.biweekly.components.process_sia_calendar
highlighting module code... [ 42%] laser.measles.biweekly.components.process_vital_dynamics
highlighting module code... [ 43%] laser.measles.biweekly.components.tracker_case_surveillance
highlighting module code... [ 45%] laser.measles.biweekly.components.tracker_fadeout
highlighting module code... [ 46%] laser.measles.biweekly.components.tracker_population
highlighting module code... [ 48%] laser.measles.biweekly.components.tracker_state
highlighting module code... [ 49%] laser.measles.biweekly.model
highlighting module code... [ 51%] laser.measles.biweekly.params
highlighting module code... [ 52%] laser.measles.compartmental.base
highlighting module code... [ 54%] laser.measles.compartmental.components.process_constant_pop
highlighting module code... [ 55%] laser.measles.compartmental.components.process_importation_pressure
highlighting module code... [ 57%] laser.measles.compartmental.components.process_infection
highlighting module code... [ 58%] laser.measles.compartmental.components.process_infection_seeding
highlighting module code... [ 60%] laser.measles.compartmental.components.process_initialize_equilibrium_states
highlighting module code... [ 62%] laser.measles.compartmental.components.process_sia_calendar
highlighting module code... [ 63%] laser.measles.compartmental.components.process_vital_dynamics
highlighting module code... [ 65%] laser.measles.compartmental.components.tracker_case_surveillance
highlighting module code... [ 66%] laser.measles.compartmental.components.tracker_fadeout
highlighting module code... [ 68%] laser.measles.compartmental.components.tracker_population
highlighting module code... [ 69%] laser.measles.compartmental.components.tracker_state
highlighting module code... [ 71%] laser.measles.compartmental.model
highlighting module code... [ 72%] laser.measles.compartmental.params
highlighting module code... [ 74%] laser.measles.components.base_case_surveillance
highlighting module code... [ 75%] laser.measles.components.base_constant_pop
highlighting module code... [ 77%] laser.measles.components.base_infection
highlighting module code... [ 78%] laser.measles.components.base_initialize_equilibrium_states
highlighting module code... [ 80%] laser.measles.components.base_tracker_fadeout
highlighting module code... [ 82%] laser.measles.components.base_tracker_population
highlighting module code... [ 83%] laser.measles.components.base_tracker_state
highlighting module code... [ 85%] laser.measles.components.base_vital_dynamics
highlighting module code... [ 86%] laser.measles.components.utils
highlighting module code... [ 88%] laser.measles.demographics.gadm
highlighting module code... [ 89%] laser.measles.demographics.raster_patch
highlighting module code... [ 91%] laser.measles.demographics.shapefiles
highlighting module code... [ 92%] laser.measles.mixing.base
highlighting module code... [ 94%] laser.measles.mixing.competing_destinations
highlighting module code... [ 95%] laser.measles.mixing.gravity
highlighting module code... [ 97%] laser.measles.mixing.radiation
highlighting module code... [ 98%] laser.measles.mixing.stouffer
highlighting module code... [100%] laser.measles.scenarios.synthetic

writing additional pages... search opensearch done
copying images... [  6%] _build/doctrees/nbsphinx/tutorials_tut_abm_vital_dynamics_5_1.svg
copying images... [ 11%] _build/doctrees/nbsphinx/tutorials_tut_abm_vital_dynamics_9_0.svg
copying images... [ 17%] _build/doctrees/nbsphinx/tutorials_tut_basic_model_2_0.svg
copying images... [ 22%] _build/doctrees/nbsphinx/tutorials_tut_basic_model_20_0.svg
copying images... [ 28%] _build/doctrees/nbsphinx/tutorials_tut_basic_model_22_0.svg
copying images... [ 33%] _build/doctrees/nbsphinx/tutorials_tut_quickstart_hello_world_14_0.svg
copying images... [ 39%] _build/doctrees/nbsphinx/tutorials_tut_scenarios_2_1.svg
copying images... [ 44%] _build/doctrees/nbsphinx/tutorials_tut_scenarios_2_2.svg
copying images... [ 50%] _build/doctrees/nbsphinx/tutorials_tut_scenarios_12_2.svg
copying images... [ 56%] _build/doctrees/nbsphinx/tutorials_tut_scenarios_12_3.svg
copying images... [ 61%] _build/doctrees/nbsphinx/tutorials_tut_spatial_mixing_2_1.svg
copying images... [ 67%] _build/doctrees/nbsphinx/tutorials_tut_spatial_mixing_9_0.svg
copying images... [ 72%] _build/doctrees/nbsphinx/tutorials_tut_traveling_waves_5_0.svg
copying images... [ 78%] _build/doctrees/nbsphinx/tutorials_tut_traveling_waves_13_0.svg
copying images... [ 83%] _build/doctrees/nbsphinx/tutorials_tut_traveling_waves_17_0.svg
copying images... [ 89%] _build/doctrees/nbsphinx/tutorials_tut_vaccination_5_0.svg
copying images... [ 94%] _build/doctrees/nbsphinx/tutorials_tut_vaccination_9_0.svg
copying images... [100%] _build/doctrees/nbsphinx/tutorials_tut_vaccination_13_0.svg

dumping search index in English (code: en)... done
dumping object inventory... done
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/141/_readthedocs/html/_static/js/rtd_search_config.js
build succeeded, 19 warnings.

The HTML pages are in ../_readthedocs/html.