Read the Docs build information Build id: 3842368 Project: institute-for-disease-modeling-covasim Version: 434 Commit: fd5eded3b391b1ae9f570ac45c1a01d84486e2b6 Date: 2026-03-18T11:24:25.541289Z State: finished Success: True [rtd-command-info] start-time: 2026-03-18T11:24:26.333377Z, end-time: 2026-03-18T11:24:26.910008Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/InstituteforDiseaseModeling/covasim.git . Cloning into '.'... [rtd-command-info] start-time: 2026-03-18T11:24:26.989754Z, end-time: 2026-03-18T11:24:28.274556Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 pull/434/head:external-434 From https://github.com/InstituteforDiseaseModeling/covasim * [new ref] refs/pull/434/head -> external-434 * [new tag] v1.4.6 -> v1.4.6 * [new tag] v1.4.7 -> v1.4.7 * [new tag] v1.5.0 -> v1.5.0 * [new tag] v2.1.1 -> v2.1.1 * [new tag] v2.1.2 -> v2.1.2 * [new tag] v3.0.0 -> v3.0.0 * [new tag] v3.0.1 -> v3.0.1 * [new tag] v3.0.2 -> v3.0.2 * [new tag] v3.0.3 -> v3.0.3 * [new tag] v3.0.4 -> v3.0.4 * [new tag] v3.0.5 -> v3.0.5 * [new tag] v3.0.6 -> v3.0.6 * [new tag] v3.0.7 -> v3.0.7 * [new tag] v3.1.0 -> v3.1.0 * [new tag] v3.1.1 -> v3.1.1 * [new tag] v3.1.2 -> v3.1.2 * [new tag] v3.1.3 -> v3.1.3 * [new tag] v3.1.4 -> v3.1.4 * [new tag] v3.1.5 -> v3.1.5 * [new tag] v3.1.6 -> v3.1.6 [rtd-command-info] start-time: 2026-03-18T11:24:29.269894Z, end-time: 2026-03-18T11:24:29.336415Z, duration: 0, exit-code: 0 git checkout --force fd5eded3b391b1ae9f570ac45c1a01d84486e2b6 Note: switching to 'fd5eded3b391b1ae9f570ac45c1a01d84486e2b6'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at fd5eded README: fix typo [rtd-command-info] start-time: 2026-03-18T11:24:29.412890Z, end-time: 2026-03-18T11:24:29.446633Z, duration: 0, exit-code: 0 cat .readthedocs.yaml # .readthedocs.yaml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-20.04 tools: python: "3.9" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py # If using Sphinx, optionally build your docs in additional formats such as PDF #formats: # - htmlzip # Optionally declare the Python requirements required to build your docs python: install: - requirements: docs/requirements.txt - method: pip path: . [rtd-command-info] start-time: 2026-03-18T11:24:34.760748Z, end-time: 2026-03-18T11:24:34.855537Z, duration: 0, exit-code: 0 asdf global python 3.9.22 [rtd-command-info] start-time: 2026-03-18T11:24:35.420943Z, end-time: 2026-03-18T11:24:36.131533Z, duration: 0, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.9.22.final.0-64 in 414ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/434, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2026-03-18T11:24:36.215185Z, end-time: 2026-03-18T11:24:42.006948Z, duration: 5, exit-code: 0 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zipp, urllib3, tomli, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset_normalizer, certifi, babel, alabaster, requests, Jinja2, importlib-metadata, sphinx Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.3 Pygments-2.19.2 alabaster-0.7.16 babel-2.18.0 certifi-2026.2.25 charset_normalizer-3.4.6 docutils-0.21.2 idna-3.11 imagesize-1.5.0 importlib-metadata-8.7.1 packaging-26.0 requests-2.32.5 snowballstemmer-3.0.1 sphinx-7.4.7 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 tomli-2.4.0 urllib3-2.6.3 zipp-3.23.0 [rtd-command-info] start-time: 2026-03-18T11:24:47.094290Z, end-time: 2026-03-18T11:25:10.218911Z, duration: 23, exit-code: 0 python -m pip install --exists-action=w 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asttokens-3.0.1-py3-none-any.whl (27 kB) Downloading executing-2.2.1-py2.py3-none-any.whl (28 kB) Downloading pure_eval-0.2.3-py3-none-any.whl (11 kB) Downloading tinycss2-1.4.0-py3-none-any.whl (26 kB) Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Downloading tqdm-4.67.3-py3-none-any.whl (78 kB) Downloading wcwidth-0.6.0-py3-none-any.whl (94 kB) Building wheels for collected packages: pandoc Building wheel for pandoc (pyproject.toml): started Building wheel for pandoc (pyproject.toml): finished with status 'done' Created wheel for pandoc: filename=pandoc-2.4-py3-none-any.whl size=34871 sha256=efb5e2fcc606e1eec2451a3ee0974f270757db4260f0fd745ee38212658b768f Stored in directory: /tmp/pip-ephem-wheel-cache-0fu0j60w/wheels/10/f8/26/ddf077e60385563a3fef3afad369a40b22e59603a700ec23e4 Successfully built pandoc Installing collected packages: webencodings, pytz, pure-eval, ptyprocess, ply, fastjsonschema, wcwidth, tzdata, typing-extensions, traitlets, tqdm, tornado, tinycss2, soupsieve, six, rpds-py, readthedocs-sphinx-search, pyzmq, PyYAML, pyparsing, pypandoc, psutil, plumbum, platformdirs, pillow, pexpect, parso, pandocfilters, numpy, nest-asyncio, Mako, kiwisolver, jupyterlab-pygments, importlib-resources, greenlet, fonttools, executing, defusedxml, decorator, debugpy, cycler, comm, colorlog, bleach, attrs, asttokens, accessible-pygments, stack-data, sqlalchemy, referencing, python-dateutil, prompt-toolkit, plantweb, pandoc, mistune, matplotlib-inline, jupyter-core, jedi, exceptiongroup, contourpy, beautifulsoup4, sphinx-design, sphinx-autodoc-typehints, pydata-sphinx-theme, pandas, matplotlib, jupyter-client, jsonschema-specifications, ipython, alembic, seaborn, optuna, jsonschema, ipykernel, nbformat, nbclient, nbconvert, nbsphinx Successfully installed Mako-1.3.10 PyYAML-6.0.3 accessible-pygments-0.0.5 alembic-1.16.5 asttokens-3.0.1 attrs-25.4.0 beautifulsoup4-4.14.3 bleach-6.2.0 colorlog-6.10.1 comm-0.2.3 contourpy-1.3.0 cycler-0.12.1 debugpy-1.8.20 decorator-5.2.1 defusedxml-0.7.1 exceptiongroup-1.3.1 executing-2.2.1 fastjsonschema-2.21.2 fonttools-4.60.2 greenlet-3.2.5 importlib-resources-6.5.2 ipykernel-6.31.0 ipython-8.18.1 jedi-0.19.2 jsonschema-4.25.1 jsonschema-specifications-2025.9.1 jupyter-client-8.6.3 jupyter-core-5.8.1 jupyterlab-pygments-0.3.0 kiwisolver-1.4.7 matplotlib-3.9.4 matplotlib-inline-0.2.1 mistune-3.2.0 nbclient-0.10.2 nbconvert-7.13.0 nbformat-5.10.4 nbsphinx-0.9.8 nest-asyncio-1.6.0 numpy-2.0.2 optuna-4.8.0 pandas-2.3.3 pandoc-2.4 pandocfilters-1.5.1 parso-0.8.6 pexpect-4.9.0 pillow-11.3.0 plantweb-1.3.0 platformdirs-4.4.0 plumbum-1.10.0 ply-3.11 prompt-toolkit-3.0.52 psutil-7.2.2 ptyprocess-0.7.0 pure-eval-0.2.3 pydata-sphinx-theme-0.16.1 pypandoc-1.17 pyparsing-3.3.2 python-dateutil-2.9.0.post0 pytz-2026.1.post1 pyzmq-27.1.0 readthedocs-sphinx-search-0.3.2 referencing-0.36.2 rpds-py-0.27.1 seaborn-0.13.2 six-1.17.0 soupsieve-2.8.3 sphinx-autodoc-typehints-2.3.0 sphinx-design-0.6.1 sqlalchemy-2.0.48 stack-data-0.6.3 tinycss2-1.4.0 tornado-6.5.5 tqdm-4.67.3 traitlets-5.14.3 typing-extensions-4.15.0 tzdata-2025.3 wcwidth-0.6.0 webencodings-0.5.1 [rtd-command-info] start-time: 2026-03-18T11:25:10.311798Z, end-time: 2026-03-18T11:25:24.808485Z, duration: 14, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir . 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patsy-1.0.2-py2.py3-none-any.whl.metadata (3.6 kB) Downloading scipy-1.13.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (38.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 38.6/38.6 MB 265.4 MB/s 0:00:00 Downloading sciris-3.2.9-py3-none-any.whl (258 kB) Downloading dill-0.4.1-py3-none-any.whl (120 kB) Downloading gitpython-3.1.46-py3-none-any.whl (208 kB) Downloading gitdb-4.0.12-py3-none-any.whl (62 kB) Downloading smmap-5.0.3-py3-none-any.whl (24 kB) Downloading jellyfish-1.2.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (361 kB) Downloading jsonpickle-4.1.1-py3-none-any.whl (47 kB) Downloading line_profiler-5.0.2-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (1.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 517.1 MB/s 0:00:00 Downloading memory_profiler-0.61.0-py3-none-any.whl (31 kB) Downloading multiprocess-0.70.19-py39-none-any.whl (133 kB) Downloading numba-0.60.0-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.7 MB) 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wheel for covasim: filename=covasim-3.1.7-py3-none-any.whl size=1632219 sha256=ad4f96dd7de2d856d539b835ffdf8c6aacae2817d69bf6d221eaba3e03825b97 Stored in directory: /tmp/pip-ephem-wheel-cache-kdbighha/wheels/eb/8f/0b/7a7ebc995b353c59cb2003b6e25be88ea016027ef0be4e6efc Successfully built covasim Installing collected packages: zstandard, xlsxwriter, smmap, scipy, patsy, memory_profiler, llvmlite, line_profiler, jsonpickle, jellyfish, et-xmlfile, dill, openpyxl, numba, multiprocess, gitdb, statsmodels, gitpython, sciris, covasim Successfully installed covasim-3.1.7 dill-0.4.1 et-xmlfile-2.0.0 gitdb-4.0.12 gitpython-3.1.46 jellyfish-1.2.1 jsonpickle-4.1.1 line_profiler-5.0.2 llvmlite-0.43.0 memory_profiler-0.61.0 multiprocess-0.70.19 numba-0.60.0 openpyxl-3.1.5 patsy-1.0.2 scipy-1.13.1 sciris-3.2.9 smmap-5.0.3 statsmodels-0.14.6 xlsxwriter-3.2.9 zstandard-0.25.0 [rtd-command-info] start-time: 2026-03-18T11:25:24.979809Z, end-time: 2026-03-18T11:25:25.016100Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. import os import sys import sciris as sc import covasim as cv # Set environment os.environ['SPHINX_BUILD'] = 'True' # This is used so cv.options.set('jupyter') doesn't reset the Matplotlib renderer on_rtd = os.environ.get('READTHEDOCS') == 'True' # -- Project information ----------------------------------------------------- project = 'Covasim' copyright = f'2020 - {sc.now().year}, Bill & Melinda Gates Foundation. All rights reserved.\nThese docs were built for Covasim version {cv.__version__}.\n' author = 'Institute for Disease Modeling' # The short X.Y version version = cv.__version__ # The full version, including alpha/beta/rc tags release = cv.__version__ # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here extensions = [ "sphinx.ext.autodoc", # Core Sphinx library for auto html doc generation from docstrings "sphinx.ext.autosummary", # Create neat summary tables for modules/classes/methods etc -- causes warnings with Napoleon however "sphinx.ext.intersphinx", "sphinx.ext.viewcode", # Add a link to the Python source code for classes, functions etc. "sphinx.ext.napoleon", "sphinx.ext.autosectionlabel", "sphinx_autodoc_typehints", # Automatically document param types (less noise in class signature) "sphinx_design", # Add e.g. grid layout 'sphinx_search.extension', # search across multiple docsets in domain "nbsphinx", ] # Use Google docstrings napoleon_google_docstring = True # Configure autosummary autosummary_generate = True # Turn on sphinx.ext.autosummary autosummary_ignore_module_all = False # Respect __all__ autodoc_member_order = 'bysource' # Keep original ordering add_module_names = False # NB, does not work autodoc_inherit_docstrings = False # Stops sublcasses from including docs from parent classes # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # Syntax highlighting style pygments_style = "sphinx" modindex_common_prefix = ["covasim."] # List of patterns, relative to source directory, to exclude exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"] # Suppress certain warnings suppress_warnings = ['autosectionlabel.*'] # -- Options for HTML output ------------------------------------------------- html_theme = "pydata_sphinx_theme" html_theme_options = { "collapse_navigation": False, "navigation_depth": 3, "show_prev_next": True, "icon_links": [ {"name": "Web", "url": "https://covasim.org", "icon": "fas fa-home"}, { "name": "GitHub", "url": "https://github.com/institutefordiseasemodeling/covasim", "icon": "fab fa-github-square", }, ], "navbar_end": ["theme-switcher", "navbar-icon-links"], "secondary_sidebar_items": ["navbar-side"], "header_links_before_dropdown": 5, "footer_start": ["copyright", "footer_start"], "footer_end": ["theme-version", "footer_end"], } html_sidebars = { "**": ["sidebar-nav-bs", "page-toc"], } html_logo = "images/idm-logo-transparent.png" html_favicon = "images/favicon.ico" html_static_path = ['_static'] html_baseurl = "https://docs.idmod.org/projects/covasim/en/latest" html_context = { 'rtd_url': 'https://docs.idmod.org/projects/covasim/en/latest', "versions_dropdown": { "latest": "devel (latest)", "stable": "current (stable)", }, "default_mode": "light", } # Add any extra paths that contain custom files if not on_rtd: html_extra_path = ['robots.txt'] # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. html_last_updated_fmt = '%Y-%b-%d' html_show_sourcelink = True html_show_sphinx = False html_copy_source = False htmlhelp_basename = 'Covasim' # Add customizations def setup(app): app.add_css_file("theme_overrides.css") # Modify this to not rerun the Jupyter notebook cells -- usually set by build_docs nb_ex_default = ['auto', 'never'][0] nb_ex = os.getenv('NBSPHINX_EXECUTE') if not nb_ex: nb_ex = nb_ex_default print(f'\n\nBuilding Jupyter notebooks with build option: {nb_ex}\n\n') nbsphinx_execute = nb_ex # OpenSearch options html_use_opensearch = 'docs.idmod.org/projects/covasim/en/latest' # -- RTD Sphinx search for searching across the entire domain, default child ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } [rtd-command-info] start-time: 2026-03-18T11:25:25.101662Z, end-time: 2026-03-18T11:28:11.456873Z, duration: 166, exit-code: 0 python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v7.4.7 Matplotlib is building the font cache; this may take a moment. Covasim 3.1.7 (2026-02-18) — © 2020-2026 by IDM Building Jupyter notebooks with build option: auto loading translations [en]... done making output directory... done [autosummary] generating autosummary for: api/index.rst, conduct.rst, contributing.rst, data.rst, faq.rst, glossary.rst, index.rst, overview.rst, papers.rst, parameters.rst, ..., tutorials/tut_calibration.ipynb, tutorials/tut_deployment.ipynb, tutorials/tut_immunity.ipynb, tutorials/tut_interventions.ipynb, tutorials/tut_intro.ipynb, tutorials/tut_people.ipynb, tutorials/tut_plotting.ipynb, tutorials/tut_running.ipynb, tutorials/tut_tips.ipynb, whatsnew.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.base.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.data.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.defaults.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.immunity.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.interventions.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.misc.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.parameters.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.people.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.plotting.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.population.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.requirements.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.run.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.settings.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.sim.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.Analyzer.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.Calibration.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.Fit.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.TransTree.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.age_histogram.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.daily_age_stats.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.daily_stats.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.nab_histogram.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.analysis.snapshot.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.base.BasePeople.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.iundefinedi.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.n_binomial.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.n_multinomial.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.n_neg_binomial.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.n_poisson.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.poisson.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.sample.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.set_seed.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.true.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.utils.undefined.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.data.loaders.get_age_distribution.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.data.loaders.get_country_aliases.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.data.loaders.get_household_size.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.data.loaders.map_entries.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/checkouts/434/docs/api/_autosummary/covasim.data.loaders.show_locations.rst building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 25 source files that are out of date updating environment: [new config] 168 added, 0 changed, 0 removed reading sources... [ 1%] api/_autosummary/covasim.analysis reading sources... [ 1%] api/_autosummary/covasim.analysis.Analyzer reading sources... [ 2%] api/_autosummary/covasim.analysis.Calibration reading sources... [ 2%] api/_autosummary/covasim.analysis.Fit reading sources... [ 3%] api/_autosummary/covasim.analysis.TransTree reading sources... [ 4%] api/_autosummary/covasim.analysis.age_histogram reading sources... [ 4%] api/_autosummary/covasim.analysis.daily_age_stats reading sources... [ 5%] api/_autosummary/covasim.analysis.daily_stats reading sources... [ 5%] api/_autosummary/covasim.analysis.nab_histogram reading sources... [ 6%] api/_autosummary/covasim.analysis.snapshot reading sources... [ 7%] api/_autosummary/covasim.base reading sources... [ 7%] api/_autosummary/covasim.base.BasePeople reading sources... [ 8%] api/_autosummary/covasim.base.BaseSim reading sources... [ 8%] api/_autosummary/covasim.base.Contacts reading sources... 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[100%] whatsnew WARNING: error while formatting signature for covasim.utils.choose: 'CPUDispatcher' object has no attribute '__mro__' WARNING: error while formatting signature for covasim.utils.choose_r: 'CPUDispatcher' object has no attribute '__mro__' WARNING: error while formatting signature for covasim.utils.n_poisson: 'CPUDispatcher' object has no attribute '__mro__' WARNING: error while formatting signature for covasim.utils.poisson: 'CPUDispatcher' object has no attribute '__mro__' WARNING: Summarised items should not include the current module. Replace 'covasim.analysis' with 'analysis'. WARNING: Summarised items should not include the current module. Replace 'covasim.base' with 'base'. WARNING: Summarised items should not include the current module. Replace 'covasim.defaults' with 'defaults'. WARNING: Summarised items should not include the current module. Replace 'covasim.immunity' with 'immunity'. WARNING: Summarised items should not include the current module. 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