Read the Docs build information
Build id: 3812624
Project: icb-scanpy
Version: 3983
Commit: 9bc61f0d420e651ce053f259c3bbde8f9dcd0504
Date: 2026-03-09T10:22:12.354680Z
State: finished
Success: False


[rtd-command-info] start-time: 2026-03-09T10:22:13.242707Z, end-time: 2026-03-09T10:22:14.119650Z, duration: 0, exit-code: 0
git clone --depth 1 https://github.com/scverse/scanpy.git .
Cloning into '.'...

[rtd-command-info] start-time: 2026-03-09T10:22:14.201524Z, end-time: 2026-03-09T10:22:15.249169Z, duration: 1, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 pull/3983/head:external-3983
From https://github.com/scverse/scanpy
 * [new ref]         refs/pull/3983/head -> external-3983
 * [new tag]         1.12.0              -> 1.12.0

[rtd-command-info] start-time: 2026-03-09T10:22:15.916015Z, end-time: 2026-03-09T10:22:16.079008Z, duration: 0, exit-code: 0
git checkout --force 9bc61f0d420e651ce053f259c3bbde8f9dcd0504
Note: switching to '9bc61f0d420e651ce053f259c3bbde8f9dcd0504'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 9bc61f0 docs reuse

[rtd-command-info] start-time: 2026-03-09T10:22:16.162636Z, end-time: 2026-03-09T10:22:16.197811Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# https://docs.readthedocs.io/en/stable/config-file/v2.html
version: 2
submodules:
  include: all
build:
  os: ubuntu-24.04
  tools:
    python: '3.13'
  jobs:
    post_checkout:
      # unshallow so version can be derived from tag
      - git fetch --unshallow || true
    create_environment:
      - asdf plugin add uv
      - asdf install uv latest
      - asdf global uv latest
    pre_build:
      # run towncrier to preview the next version’s release notes
      - ( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx "--with=virtualenv<21" hatch run towncrier build --keep || true
    build:
      html:
        - uvx "--with=virtualenv<21" hatch run docs:build
        - mv docs/_build $READTHEDOCS_OUTPUT

[rtd-command-info] start-time: 2026-03-09T10:22:16.320105Z, end-time: 2026-03-09T10:22:16.378773Z, duration: 0, exit-code: 0
git submodule sync


[rtd-command-info] start-time: 2026-03-09T10:22:16.464631Z, end-time: 2026-03-09T10:22:35.108154Z, duration: 18, exit-code: 0
git submodule update --init --force --
Submodule 'notebooks' (https://github.com/scverse/scanpy-tutorials/) registered for path 'notebooks'
Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/3983/notebooks'...
Submodule path 'notebooks': checked out '33dcb2d93b4686f313019f52705d5c752b37fc4e'

[rtd-command-info] start-time: 2026-03-09T10:22:35.192678Z, end-time: 2026-03-09T10:22:39.510397Z, duration: 4, exit-code: 0
git fetch --unshallow || true
From https://github.com/scverse/scanpy
 * [new tag]           0.0         -> 0.0
 * [new tag]           0.1         -> 0.1
 * [new tag]           0.2         -> 0.2
 * [new tag]           0.2.1       -> 0.2.1
 * [new tag]           0.2.3       -> 0.2.3
 * [new tag]           0.2.3.5     -> 0.2.3.5
 * [new tag]           0.2.4       -> 0.2.4
 * [new tag]           0.2.5       -> 0.2.5
 * [new tag]           0.2.6       -> 0.2.6
 * [new tag]           0.2.7       -> 0.2.7
 * [new tag]           0.2.8       -> 0.2.8
 * [new tag]           0.2.9       -> 0.2.9
 * [new tag]           0.2.9.1     -> 0.2.9.1
 * [new tag]           0.3         -> 0.3
 * [new tag]           0.3.1       -> 0.3.1
 * [new tag]           0.3.2       -> 0.3.2
 * [new tag]           0.4         -> 0.4
 * [new tag]           0.4.1       -> 0.4.1
 * [new tag]           0.4.2       -> 0.4.2
 * [new tag]           0.4.2.post1 -> 0.4.2.post1
 * [new tag]           0.4.2.post2 -> 0.4.2.post2
 * [new tag]           0.4.3       -> 0.4.3
 * [new tag]           0.4.4       -> 0.4.4
 * [new tag]           1.0         -> 1.0
 * [new tag]           1.0.1       -> 1.0.1
 * [new tag]           1.0.2       -> 1.0.2
 * [new tag]           1.0.3       -> 1.0.3
 * [new tag]           1.0.4       -> 1.0.4
 * [new tag]           1.1         -> 1.1
 * [new tag]           1.10.0.dev0 -> 1.10.0.dev0
 * [new tag]           1.10.0rc1   -> 1.10.0rc1
 * [new tag]           1.11.0      -> 1.11.0
 * [new tag]           1.11.0rc1   -> 1.11.0rc1
 * [new tag]           1.11.0rc2   -> 1.11.0rc2
 * [new tag]           1.12.0rc1   -> 1.12.0rc1
 * [new tag]           1.1a1       -> 1.1a1
 * [new tag]           1.1a2       -> 1.1a2
 * [new tag]           1.2.0       -> 1.2.0
 * [new tag]           1.2.1       -> 1.2.1
 * [new tag]           1.2.2       -> 1.2.2
 * [new tag]           1.3         -> 1.3
 * [new tag]           1.3.1       -> 1.3.1
 * [new tag]           1.3.2       -> 1.3.2
 * [new tag]           1.3.3       -> 1.3.3
 * [new tag]           1.3.4       -> 1.3.4
 * [new tag]           1.3.5       -> 1.3.5
 * [new tag]           1.3.6       -> 1.3.6
 * [new tag]           1.3.7       -> 1.3.7
 * [new tag]           1.3.8       -> 1.3.8
 * [new tag]           1.4         -> 1.4
 * [new tag]           1.4.1       -> 1.4.1
 * [new tag]           1.4.2       -> 1.4.2
 * [new tag]           1.4.3       -> 1.4.3
 * [new tag]           1.4.4       -> 1.4.4
 * [new tag]           1.4.5       -> 1.4.5
 * [new tag]           1.4.5.1     -> 1.4.5.1
 * [new tag]           1.4.5.post1 -> 1.4.5.post1
 * [new tag]           1.4.5.post2 -> 1.4.5.post2
 * [new tag]           1.4.5.post3 -> 1.4.5.post3
 * [new tag]           1.4.6       -> 1.4.6
 * [new tag]           1.5.0       -> 1.5.0
 * [new tag]           1.5.0a1     -> 1.5.0a1
 * [new tag]           1.5.1       -> 1.5.1
 * [new tag]           1.6.0       -> 1.6.0
 * [new tag]           1.7.0rc1    -> 1.7.0rc1
 * [new tag]           1.8.0       -> 1.8.0
 * [new tag]           1.8.0.dev0  -> 1.8.0.dev0
 * [new tag]           1.9.0       -> 1.9.0
 * [new tag]           1.9.0.dev0  -> 1.9.0.dev0
Fetching submodule notebooks
From https://github.com/scverse/scanpy-tutorials
 * branch            26e16f83387caef76abdd42afda3c7c13f7139f1 -> FETCH_HEAD

[rtd-command-info] start-time: 2026-03-09T10:22:44.139536Z, end-time: 2026-03-09T10:22:44.188479Z, duration: 0, exit-code: 0
asdf global python 3.13.3


[rtd-command-info] start-time: 2026-03-09T10:22:44.524405Z, end-time: 2026-03-09T10:22:45.867150Z, duration: 1, exit-code: 0
asdf plugin add uv
updating plugin repository...From https://github.com/asdf-vm/asdf-plugins
   8e311ee..c0369a1  master     -> origin/master
 * [new branch]      dependabot/github_actions/actions/checkout-6 -> origin/dependabot/github_actions/actions/checkout-6
 * [new branch]      dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1 -> origin/dependabot/github_actions/amannn/action-semantic-pull-request-6.1.1
 * [new branch]      dependabot/github_actions/asdf-vm/actions-4 -> origin/dependabot/github_actions/asdf-vm/actions-4
HEAD is now at c0369a1 feat: add yasm plugin (#1087)

[rtd-command-info] start-time: 2026-03-09T10:22:45.957742Z, end-time: 2026-03-09T10:22:46.939084Z, duration: 0, exit-code: 0
asdf install uv latest
redirect url: https://github.com/astral-sh/uv/releases/tag/0.10.9
* Downloading uv release 0.10.9...
uv 0.10.9 installation was successful!

[rtd-command-info] start-time: 2026-03-09T10:22:47.018257Z, end-time: 2026-03-09T10:22:47.127360Z, duration: 0, exit-code: 0
asdf global uv latest
redirect url: https://github.com/astral-sh/uv/releases/tag/0.10.9

[rtd-command-info] start-time: 2026-03-09T10:22:47.272173Z, end-time: 2026-03-09T10:22:53.124199Z, duration: 5, exit-code: 0
( find docs/release-notes -regex '[^.]+[.][^.]+.md' | grep -q . ) && uvx "--with=virtualenv<21" hatch run towncrier build --keep || true
Downloading pygments (1.2MiB)
Downloading cryptography (4.3MiB)
Downloading virtualenv (5.6MiB)
Downloading uv (22.4MiB)
 Downloaded virtualenv
 Downloaded uv
 Downloaded cryptography
 Downloaded pygments
Installed 41 packages in 22ms
Creating environment: default
Installing project in development mode
Checking dependencies
Syncing dependencies
Loading template...
Finding news fragments...
Rendering news fragments...
Writing to newsfile...
Staging newsfile...
Keeping the following files:
/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/3983/docs/release-notes/3980.fix.md
/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/3983/docs/release-notes/3984.chore.md
/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/3983/docs/release-notes/3983.feat.md
Done!

[rtd-command-info] start-time: 2026-03-09T10:22:53.210694Z, end-time: 2026-03-09T10:23:45.955847Z, duration: 52, exit-code: 2
uvx "--with=virtualenv<21" hatch run docs:build
Creating environment: docs
Installing project in development mode
Checking dependencies
Syncing dependencies
Running Sphinx v9.1.0
loading translations [en]... done


Versions
========

* Platform:         linux; (Linux-6.17.0-1007-aws-x86_64-with-glibc2.39)
* Python version:   3.13.3 (CPython)
* Sphinx version:   9.1.0
* Docutils version: 0.22.4
* Jinja2 version:   3.1.6
* Pygments version: 2.19.2

Last Messages
=============

None.

Loaded Extensions
=================

None.

Traceback
=========

      File "/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/3983/src/scanpy/_utils/__init__.py", line 248, in dec
        obj.__doc__ = obj.__doc__.format_map(indented_replacements)
                      ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^
    KeyError: "`'degree_dashed'`, `'degree_solid'`"


The full traceback has been saved in:
/tmp/sphinx-err-kgetaoch.log

To report this error to the developers, please open an issue at <https://github.com/sphinx-doc/sphinx/issues/>. Thanks!
Please also report this if it was a user error, so that a better error message can be provided next time.