Read the Docs build information
Build id: 3439777
Project: icb-scanpy-tutorials
Version: latest
Commit: 74a69b11c5bf52e5943e041f5e5ac528a58d7f59
Date: 2025-10-14T08:28:24.429244Z
State: finished
Success: True


[rtd-command-info] start-time: 2025-10-14T08:28:25.352767Z, end-time: 2025-10-14T08:28:29.948382Z, duration: 4, exit-code: 0
git clone --depth 1 https://github.com/scverse/scanpy-tutorials.git .
Cloning into '.'...

[rtd-command-info] start-time: 2025-10-14T08:28:30.047683Z, end-time: 2025-10-14T08:28:35.724954Z, duration: 5, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main


[rtd-command-info] start-time: 2025-10-14T08:28:36.408087Z, end-time: 2025-10-14T08:28:36.743812Z, duration: 0, exit-code: 0
git checkout --force origin/main
Note: switching to 'origin/main'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 74a69b1 [pre-commit.ci] pre-commit autoupdate (#203)

[rtd-command-info] start-time: 2025-10-14T08:28:36.829746Z, end-time: 2025-10-14T08:28:36.866176Z, duration: 0, exit-code: 0
cat .readthedocs.yml
version: 2
build:
  os: ubuntu-24.04
  tools:
    python: "3.13"
sphinx:
  configuration: conf.py
  fail_on_warning: true
python:
  install:
    - method: pip
      path: .

[rtd-command-info] start-time: 2025-10-14T08:28:41.632732Z, end-time: 2025-10-14T08:28:41.686610Z, duration: 0, exit-code: 0
asdf global python 3.13.3


[rtd-command-info] start-time: 2025-10-14T08:28:42.093881Z, end-time: 2025-10-14T08:28:42.817071Z, duration: 0, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.13.3.final.0-64 in 427ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0
  activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2025-10-14T08:28:42.953774Z, end-time: 2025-10-14T08:28:48.560071Z, duration: 5, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (23.1)
Collecting pip
  Downloading pip-25.2-py3-none-any.whl (1.8 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 16.3 MB/s eta 0:00:00
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (67.6.1)
Collecting setuptools
  Downloading setuptools-80.9.0-py3-none-any.whl (1.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 25.4 MB/s eta 0:00:00
Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 67.6.1
    Uninstalling setuptools-67.6.1:
      Successfully uninstalled setuptools-67.6.1
  Attempting uninstall: pip
    Found existing installation: pip 23.1
    Uninstalling pip-23.1:
      Successfully uninstalled pip-23.1
Successfully installed pip-25.2 setuptools-80.9.0

[rtd-command-info] start-time: 2025-10-14T08:28:48.655558Z, end-time: 2025-10-14T08:28:53.031025Z, duration: 4, exit-code: 0
python -m pip install --upgrade --no-cache-dir sphinx
Collecting sphinx
  Downloading sphinx-8.2.3-py3-none-any.whl.metadata (7.0 kB)
Collecting sphinxcontrib-applehelp>=1.0.7 (from sphinx)
  Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
Collecting sphinxcontrib-devhelp>=1.0.6 (from sphinx)
  Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
Collecting sphinxcontrib-htmlhelp>=2.0.6 (from sphinx)
  Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB)
Collecting sphinxcontrib-jsmath>=1.0.1 (from sphinx)
  Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting sphinxcontrib-qthelp>=1.0.6 (from sphinx)
  Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB)
Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx)
  Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB)
Collecting Jinja2>=3.1 (from sphinx)
  Downloading jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
Collecting Pygments>=2.17 (from sphinx)
  Downloading pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
Collecting docutils<0.22,>=0.20 (from sphinx)
  Downloading docutils-0.21.2-py3-none-any.whl.metadata (2.8 kB)
Collecting snowballstemmer>=2.2 (from sphinx)
  Downloading snowballstemmer-3.0.1-py3-none-any.whl.metadata (7.9 kB)
Collecting babel>=2.13 (from sphinx)
  Downloading babel-2.17.0-py3-none-any.whl.metadata (2.0 kB)
Collecting alabaster>=0.7.14 (from sphinx)
  Downloading alabaster-1.0.0-py3-none-any.whl.metadata (2.8 kB)
Collecting imagesize>=1.3 (from sphinx)
  Downloading imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB)
Collecting requests>=2.30.0 (from sphinx)
  Downloading requests-2.32.5-py3-none-any.whl.metadata (4.9 kB)
Collecting roman-numerals-py>=1.0.0 (from sphinx)
  Downloading roman_numerals_py-3.1.0-py3-none-any.whl.metadata (3.6 kB)
Collecting packaging>=23.0 (from sphinx)
  Downloading packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
Collecting MarkupSafe>=2.0 (from Jinja2>=3.1->sphinx)
  Downloading markupsafe-3.0.3-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
Collecting charset_normalizer<4,>=2 (from requests>=2.30.0->sphinx)
  Downloading charset_normalizer-3.4.4-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB)
Collecting idna<4,>=2.5 (from requests>=2.30.0->sphinx)
  Downloading idna-3.11-py3-none-any.whl.metadata (8.4 kB)
Collecting urllib3<3,>=1.21.1 (from requests>=2.30.0->sphinx)
  Downloading urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
Collecting certifi>=2017.4.17 (from requests>=2.30.0->sphinx)
  Downloading certifi-2025.10.5-py3-none-any.whl.metadata (2.5 kB)
Downloading sphinx-8.2.3-py3-none-any.whl (3.6 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 131.1 MB/s  0:00:00
Downloading docutils-0.21.2-py3-none-any.whl (587 kB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 587.4/587.4 kB 633.8 MB/s  0:00:00
Downloading alabaster-1.0.0-py3-none-any.whl (13 kB)
Downloading babel-2.17.0-py3-none-any.whl (10.2 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.2/10.2 MB 317.0 MB/s  0:00:00
Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB)
Downloading jinja2-3.1.6-py3-none-any.whl (134 kB)
Downloading markupsafe-3.0.3-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
Downloading packaging-25.0-py3-none-any.whl (66 kB)
Downloading pygments-2.19.2-py3-none-any.whl (1.2 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 685.7 MB/s  0:00:00
Downloading requests-2.32.5-py3-none-any.whl (64 kB)
Downloading charset_normalizer-3.4.4-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (153 kB)
Downloading idna-3.11-py3-none-any.whl (71 kB)
Downloading urllib3-2.5.0-py3-none-any.whl (129 kB)
Downloading certifi-2025.10.5-py3-none-any.whl (163 kB)
Downloading roman_numerals_py-3.1.0-py3-none-any.whl (7.7 kB)
Downloading snowballstemmer-3.0.1-py3-none-any.whl (103 kB)
Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB)
Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB)
Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB)
Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB)
Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB)
Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB)
Installing collected packages: urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, roman-numerals-py, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset_normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx

Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.3 Pygments-2.19.2 alabaster-1.0.0 babel-2.17.0 certifi-2025.10.5 charset_normalizer-3.4.4 docutils-0.21.2 idna-3.11 imagesize-1.4.1 packaging-25.0 requests-2.32.5 roman-numerals-py-3.1.0 snowballstemmer-3.0.1 sphinx-8.2.3 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.5.0

[rtd-command-info] start-time: 2025-10-14T08:28:53.133635Z, end-time: 2025-10-14T08:29:03.989867Z, duration: 10, exit-code: 0
python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .
Processing /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/checkouts/latest
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting myst-nb (from scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading myst_nb-1.3.0-py3-none-any.whl.metadata (4.7 kB)
Collecting scanpydoc>=0.13.4 (from scanpydoc[theme]>=0.13.4->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading scanpydoc-0.15.4-py3-none-any.whl.metadata (2.6 kB)
Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from scanpy-tutorials==0.1.dev50+g74a69b11c) (8.2.3)
Collecting sphinx-book-theme>=1.1.0 (from scanpydoc[theme]>=0.13.4->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading sphinx_book_theme-1.1.4-py3-none-any.whl.metadata (5.8 kB)
Requirement already satisfied: sphinxcontrib-applehelp>=1.0.7 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.0.0)
Requirement already satisfied: sphinxcontrib-devhelp>=1.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.0.0)
Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.1.0)
Requirement already satisfied: sphinxcontrib-jsmath>=1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (1.0.1)
Requirement already satisfied: sphinxcontrib-qthelp>=1.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.0.0)
Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.0.0)
Requirement already satisfied: Jinja2>=3.1 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (3.1.6)
Requirement already satisfied: Pygments>=2.17 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.19.2)
Requirement already satisfied: docutils<0.22,>=0.20 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (0.21.2)
Requirement already satisfied: snowballstemmer>=2.2 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (3.0.1)
Requirement already satisfied: babel>=2.13 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.17.0)
Requirement already satisfied: alabaster>=0.7.14 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (1.0.0)
Requirement already satisfied: imagesize>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (1.4.1)
Requirement already satisfied: requests>=2.30.0 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.32.5)
Requirement already satisfied: roman-numerals-py>=1.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (3.1.0)
Requirement already satisfied: packaging>=23.0 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (25.0)
Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from Jinja2>=3.1->sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (3.0.3)
Requirement already satisfied: charset_normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from requests>=2.30.0->sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (3.4.4)
Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from requests>=2.30.0->sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (3.11)
Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from requests>=2.30.0->sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2.5.0)
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/envs/latest/lib/python3.13/site-packages (from requests>=2.30.0->sphinx->scanpy-tutorials==0.1.dev50+g74a69b11c) (2025.10.5)
Collecting pydata-sphinx-theme==0.15.4 (from sphinx-book-theme>=1.1.0->scanpydoc[theme]>=0.13.4->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading pydata_sphinx_theme-0.15.4-py3-none-any.whl.metadata (7.5 kB)
Collecting beautifulsoup4 (from pydata-sphinx-theme==0.15.4->sphinx-book-theme>=1.1.0->scanpydoc[theme]>=0.13.4->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading beautifulsoup4-4.14.2-py3-none-any.whl.metadata (3.8 kB)
Collecting accessible-pygments (from pydata-sphinx-theme==0.15.4->sphinx-book-theme>=1.1.0->scanpydoc[theme]>=0.13.4->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading accessible_pygments-0.0.5-py3-none-any.whl.metadata (10 kB)
Collecting typing-extensions (from pydata-sphinx-theme==0.15.4->sphinx-book-theme>=1.1.0->scanpydoc[theme]>=0.13.4->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB)
Collecting soupsieve>1.2 (from beautifulsoup4->pydata-sphinx-theme==0.15.4->sphinx-book-theme>=1.1.0->scanpydoc[theme]>=0.13.4->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading soupsieve-2.8-py3-none-any.whl.metadata (4.6 kB)
Collecting importlib_metadata (from myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading importlib_metadata-8.7.0-py3-none-any.whl.metadata (4.8 kB)
Collecting ipython (from myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading ipython-9.6.0-py3-none-any.whl.metadata (4.4 kB)
Collecting jupyter-cache>=0.5 (from myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading jupyter_cache-1.0.1-py3-none-any.whl.metadata (5.8 kB)
Collecting nbclient (from myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading nbclient-0.10.2-py3-none-any.whl.metadata (8.3 kB)
Collecting myst-parser>=1.0.0 (from myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading myst_parser-4.0.1-py3-none-any.whl.metadata (5.5 kB)
Collecting nbformat>=5.0 (from myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading nbformat-5.10.4-py3-none-any.whl.metadata (3.6 kB)
Collecting pyyaml (from myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading pyyaml-6.0.3-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
Collecting ipykernel (from myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading ipykernel-7.0.0-py3-none-any.whl.metadata (6.2 kB)
Collecting attrs (from jupyter-cache>=0.5->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading attrs-25.4.0-py3-none-any.whl.metadata (10 kB)
Collecting click (from jupyter-cache>=0.5->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading click-8.3.0-py3-none-any.whl.metadata (2.6 kB)
Collecting sqlalchemy<3,>=1.3.12 (from jupyter-cache>=0.5->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading sqlalchemy-2.0.44-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.5 kB)
Collecting tabulate (from jupyter-cache>=0.5->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading tabulate-0.9.0-py3-none-any.whl.metadata (34 kB)
Collecting greenlet>=1 (from sqlalchemy<3,>=1.3.12->jupyter-cache>=0.5->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading greenlet-3.2.4-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (4.1 kB)
Collecting markdown-it-py~=3.0 (from myst-parser>=1.0.0->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading markdown_it_py-3.0.0-py3-none-any.whl.metadata (6.9 kB)
Collecting mdit-py-plugins>=0.4.1,~=0.4 (from myst-parser>=1.0.0->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading mdit_py_plugins-0.5.0-py3-none-any.whl.metadata (2.8 kB)
Collecting mdurl~=0.1 (from markdown-it-py~=3.0->myst-parser>=1.0.0->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
Collecting jupyter-client>=6.1.12 (from nbclient->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading jupyter_client-8.6.3-py3-none-any.whl.metadata (8.3 kB)
Collecting jupyter-core!=5.0.*,>=4.12 (from nbclient->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading jupyter_core-5.8.1-py3-none-any.whl.metadata (1.6 kB)
Collecting traitlets>=5.4 (from nbclient->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
Collecting python-dateutil>=2.8.2 (from jupyter-client>=6.1.12->nbclient->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting pyzmq>=23.0 (from jupyter-client>=6.1.12->nbclient->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading pyzmq-27.1.0-cp312-abi3-manylinux_2_26_x86_64.manylinux_2_28_x86_64.whl.metadata (6.0 kB)
Collecting tornado>=6.2 (from jupyter-client>=6.1.12->nbclient->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading tornado-6.5.2-cp39-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.8 kB)
Collecting platformdirs>=2.5 (from jupyter-core!=5.0.*,>=4.12->nbclient->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading platformdirs-4.5.0-py3-none-any.whl.metadata (12 kB)
Collecting fastjsonschema>=2.15 (from nbformat>=5.0->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading fastjsonschema-2.21.2-py3-none-any.whl.metadata (2.3 kB)
Collecting jsonschema>=2.6 (from nbformat>=5.0->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading jsonschema-4.25.1-py3-none-any.whl.metadata (7.6 kB)
Collecting jsonschema-specifications>=2023.03.6 (from jsonschema>=2.6->nbformat>=5.0->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading jsonschema_specifications-2025.9.1-py3-none-any.whl.metadata (2.9 kB)
Collecting referencing>=0.28.4 (from jsonschema>=2.6->nbformat>=5.0->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading referencing-0.37.0-py3-none-any.whl.metadata (2.8 kB)
Collecting rpds-py>=0.7.1 (from jsonschema>=2.6->nbformat>=5.0->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading rpds_py-0.27.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.2 kB)
Collecting six>=1.5 (from python-dateutil>=2.8.2->jupyter-client>=6.1.12->nbclient->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting zipp>=3.20 (from importlib_metadata->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading zipp-3.23.0-py3-none-any.whl.metadata (3.6 kB)
Collecting comm>=0.1.1 (from ipykernel->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading comm-0.2.3-py3-none-any.whl.metadata (3.7 kB)
Collecting debugpy>=1.6.5 (from ipykernel->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading debugpy-1.8.17-cp313-cp313-manylinux_2_34_x86_64.whl.metadata (1.4 kB)
Collecting matplotlib-inline>=0.1 (from ipykernel->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading matplotlib_inline-0.1.7-py3-none-any.whl.metadata (3.9 kB)
Collecting nest-asyncio>=1.4 (from ipykernel->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading nest_asyncio-1.6.0-py3-none-any.whl.metadata (2.8 kB)
Collecting psutil>=5.7 (from ipykernel->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading psutil-7.1.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (23 kB)
Collecting decorator (from ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading decorator-5.2.1-py3-none-any.whl.metadata (3.9 kB)
Collecting ipython-pygments-lexers (from ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading ipython_pygments_lexers-1.1.1-py3-none-any.whl.metadata (1.1 kB)
Collecting jedi>=0.16 (from ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading jedi-0.19.2-py2.py3-none-any.whl.metadata (22 kB)
Collecting pexpect>4.3 (from ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting prompt_toolkit<3.1.0,>=3.0.41 (from ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading prompt_toolkit-3.0.52-py3-none-any.whl.metadata (6.4 kB)
Collecting stack_data (from ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
Collecting wcwidth (from prompt_toolkit<3.1.0,>=3.0.41->ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading wcwidth-0.2.14-py2.py3-none-any.whl.metadata (15 kB)
Collecting parso<0.9.0,>=0.8.4 (from jedi>=0.16->ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading parso-0.8.5-py2.py3-none-any.whl.metadata (8.3 kB)
Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting executing>=1.2.0 (from stack_data->ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading executing-2.2.1-py2.py3-none-any.whl.metadata (8.9 kB)
Collecting asttokens>=2.1.0 (from stack_data->ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading asttokens-3.0.0-py3-none-any.whl.metadata (4.7 kB)
Collecting pure-eval (from stack_data->ipython->myst-nb->scanpy-tutorials==0.1.dev50+g74a69b11c)
  Downloading pure_eval-0.2.3-py3-none-any.whl.metadata (6.3 kB)
Downloading scanpydoc-0.15.4-py3-none-any.whl (36 kB)
Downloading sphinx_book_theme-1.1.4-py3-none-any.whl (433 kB)
Downloading pydata_sphinx_theme-0.15.4-py3-none-any.whl (4.6 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 196.0 MB/s  0:00:00
Downloading accessible_pygments-0.0.5-py3-none-any.whl (1.4 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 403.7 MB/s  0:00:00
Downloading beautifulsoup4-4.14.2-py3-none-any.whl (106 kB)
Downloading soupsieve-2.8-py3-none-any.whl (36 kB)
Downloading typing_extensions-4.15.0-py3-none-any.whl (44 kB)
Downloading myst_nb-1.3.0-py3-none-any.whl (82 kB)
Downloading jupyter_cache-1.0.1-py3-none-any.whl (33 kB)
Downloading sqlalchemy-2.0.44-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.3 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 692.0 MB/s  0:00:00
Downloading greenlet-3.2.4-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (610 kB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 610.5/610.5 kB 640.4 MB/s  0:00:00
Downloading myst_parser-4.0.1-py3-none-any.whl (84 kB)
Downloading markdown_it_py-3.0.0-py3-none-any.whl (87 kB)
Downloading mdit_py_plugins-0.5.0-py3-none-any.whl (57 kB)
Downloading mdurl-0.1.2-py3-none-any.whl (10.0 kB)
Downloading nbclient-0.10.2-py3-none-any.whl (25 kB)
Downloading jupyter_client-8.6.3-py3-none-any.whl (106 kB)
Downloading jupyter_core-5.8.1-py3-none-any.whl (28 kB)
Downloading nbformat-5.10.4-py3-none-any.whl (78 kB)
Downloading fastjsonschema-2.21.2-py3-none-any.whl (24 kB)
Downloading jsonschema-4.25.1-py3-none-any.whl (90 kB)
Downloading attrs-25.4.0-py3-none-any.whl (67 kB)
Downloading jsonschema_specifications-2025.9.1-py3-none-any.whl (18 kB)
Downloading platformdirs-4.5.0-py3-none-any.whl (18 kB)
Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Downloading pyzmq-27.1.0-cp312-abi3-manylinux_2_26_x86_64.manylinux_2_28_x86_64.whl (840 kB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 841.0/841.0 kB 599.1 MB/s  0:00:00
Downloading referencing-0.37.0-py3-none-any.whl (26 kB)
Downloading rpds_py-0.27.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (386 kB)
Downloading six-1.17.0-py2.py3-none-any.whl (11 kB)
Downloading tornado-6.5.2-cp39-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB)
Downloading traitlets-5.14.3-py3-none-any.whl (85 kB)
Downloading click-8.3.0-py3-none-any.whl (107 kB)
Downloading importlib_metadata-8.7.0-py3-none-any.whl (27 kB)
Downloading zipp-3.23.0-py3-none-any.whl (10 kB)
Downloading ipykernel-7.0.0-py3-none-any.whl (118 kB)
Downloading comm-0.2.3-py3-none-any.whl (7.3 kB)
Downloading debugpy-1.8.17-cp313-cp313-manylinux_2_34_x86_64.whl (4.3 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.3/4.3 MB 383.8 MB/s  0:00:00
Downloading ipython-9.6.0-py3-none-any.whl (616 kB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 616.2/616.2 kB 259.4 MB/s  0:00:00
Downloading prompt_toolkit-3.0.52-py3-none-any.whl (391 kB)
Downloading jedi-0.19.2-py2.py3-none-any.whl (1.6 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 744.7 MB/s  0:00:00
Downloading parso-0.8.5-py2.py3-none-any.whl (106 kB)
Downloading matplotlib_inline-0.1.7-py3-none-any.whl (9.9 kB)
Downloading nest_asyncio-1.6.0-py3-none-any.whl (5.2 kB)
Downloading pexpect-4.9.0-py2.py3-none-any.whl (63 kB)
Downloading psutil-7.1.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (291 kB)
Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Downloading decorator-5.2.1-py3-none-any.whl (9.2 kB)
Downloading ipython_pygments_lexers-1.1.1-py3-none-any.whl (8.1 kB)
Downloading pyyaml-6.0.3-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (801 kB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 801.6/801.6 kB 694.9 MB/s  0:00:00
Downloading stack_data-0.6.3-py3-none-any.whl (24 kB)
Downloading asttokens-3.0.0-py3-none-any.whl (26 kB)
Downloading executing-2.2.1-py2.py3-none-any.whl (28 kB)
Downloading pure_eval-0.2.3-py3-none-any.whl (11 kB)
Downloading tabulate-0.9.0-py3-none-any.whl (35 kB)
Downloading wcwidth-0.2.14-py2.py3-none-any.whl (37 kB)
Building wheels for collected packages: scanpy-tutorials
  Building wheel for scanpy-tutorials (pyproject.toml): started
  Building wheel for scanpy-tutorials (pyproject.toml): finished with status 'done'
  Created wheel for scanpy-tutorials: filename=scanpy_tutorials-0.1.dev50+g74a69b11c-py3-none-any.whl size=2126 sha256=012e684cb486e05d6ff1385f904b0aa9874a021b573a2f481528fa4feb04dbca
  Stored in directory: /tmp/pip-ephem-wheel-cache-sun0s9tu/wheels/73/f7/8c/76731b29b775884f34c3ac7056114c55ce8ba77c3d651b6bbd
Successfully built scanpy-tutorials
Installing collected packages: pure-eval, ptyprocess, fastjsonschema, zipp, wcwidth, typing-extensions, traitlets, tornado, tabulate, soupsieve, six, rpds-py, pyzmq, pyyaml, psutil, platformdirs, pexpect, parso, nest-asyncio, mdurl, ipython-pygments-lexers, greenlet, executing, decorator, debugpy, comm, click, attrs, asttokens, accessible-pygments, stack_data, sqlalchemy, referencing, python-dateutil, prompt_toolkit, matplotlib-inline, markdown-it-py, jupyter-core, jedi, importlib_metadata, beautifulsoup4, scanpydoc, pydata-sphinx-theme, mdit-py-plugins, jupyter-client, jsonschema-specifications, ipython, sphinx-book-theme, myst-parser, jsonschema, ipykernel, nbformat, nbclient, jupyter-cache, myst-nb, scanpy-tutorials

Successfully installed accessible-pygments-0.0.5 asttokens-3.0.0 attrs-25.4.0 beautifulsoup4-4.14.2 click-8.3.0 comm-0.2.3 debugpy-1.8.17 decorator-5.2.1 executing-2.2.1 fastjsonschema-2.21.2 greenlet-3.2.4 importlib_metadata-8.7.0 ipykernel-7.0.0 ipython-9.6.0 ipython-pygments-lexers-1.1.1 jedi-0.19.2 jsonschema-4.25.1 jsonschema-specifications-2025.9.1 jupyter-cache-1.0.1 jupyter-client-8.6.3 jupyter-core-5.8.1 markdown-it-py-3.0.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.5.0 mdurl-0.1.2 myst-nb-1.3.0 myst-parser-4.0.1 nbclient-0.10.2 nbformat-5.10.4 nest-asyncio-1.6.0 parso-0.8.5 pexpect-4.9.0 platformdirs-4.5.0 prompt_toolkit-3.0.52 psutil-7.1.0 ptyprocess-0.7.0 pure-eval-0.2.3 pydata-sphinx-theme-0.15.4 python-dateutil-2.9.0.post0 pyyaml-6.0.3 pyzmq-27.1.0 referencing-0.37.0 rpds-py-0.27.1 scanpy-tutorials-0.1.dev50+g74a69b11c scanpydoc-0.15.4 six-1.17.0 soupsieve-2.8 sphinx-book-theme-1.1.4 sqlalchemy-2.0.44 stack_data-0.6.3 tabulate-0.9.0 tornado-6.5.2 traitlets-5.14.3 typing-extensions-4.15.0 wcwidth-0.2.14 zipp-3.23.0

[rtd-command-info] start-time: 2025-10-14T08:29:04.262636Z, end-time: 2025-10-14T08:29:04.301527Z, duration: 0, exit-code: 0
cat conf.py
from __future__ import annotations

import os
from datetime import UTC, datetime
from importlib.metadata import metadata
from types import MappingProxyType
from typing import TYPE_CHECKING, ClassVar

from docutils import nodes
from sphinx import addnodes
from sphinx.domains import Domain
from sphinx.errors import NoUri
from sphinx.ext.intersphinx import resolve_reference_in_inventory
from sphinx.util.docutils import SphinxDirective


if TYPE_CHECKING:
    from collections.abc import Mapping, Sequence

    from docutils.parsers.rst.states import Inliner
    from sphinx.application import Sphinx
    from sphinx.environment import BuildEnvironment


meta = metadata("scanpy-tutorials")
project = meta["Name"]
author = meta["Author"]
copyright = f"{datetime.now(UTC):%Y}, {author}"  # noqa: A001
release = version = meta["Version"]

extensions = [
    "myst_nb",
    "sphinx.ext.intersphinx",
]
myst_enable_extensions = [
    "colon_fence",
]

templates_path = ["_templates"]
source_suffix = ".rst"
master_doc = "index"
language = "en"
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints", "scanpy_workshop", ".*cache"]
pygments_style = "sphinx"

intersphinx_mapping = dict(
    anndata=("https://anndata.readthedocs.io/en/stable/", None),
    scanpy=("https://scanpy.readthedocs.io/en/latest/", None),
)
suppress_warnings = ["image.not_readable"]

# -- Options for HTML output ----------------------------------------------

html_theme = "scanpydoc"
html_theme_options = dict(
    repository_url="https://github.com/theislab/scanpy-tutorials",
    repository_branch="master",
    use_repository_button=True,
)
html_static_path = ["_static"]
# include a warning background on RTD for everything but PR builds
html_css_files = (
    ["css/warning.css"]
    if os.environ.get("READTHEDOCS") and os.environ.get("READTHEDOCS_VERSION_TYPE") != "external"
    else []
)
html_logo = "_static/img/Scanpy_Logo_BrightFG.svg"

# -- Notebook settings ----------------------------------------------------

nb_execution_mode = "off"
nb_output_stderr = "remove"
myst_heading_anchors = 3
suppress_warnings = [
    # paga-paul15.ipynb: /_static/img/tutorials/paga_planaria.png
    "image.not_readable",
    # application/vnd.microsoft.datawrangler.viewer.v0+json
    "mystnb.unknown_mime_type",
]


# Roles “implementing” {cite}`…` and {cite:p}`…`/{cite:t}`…`


def fake_cite(
    name: str,
    rawtext: str,
    text: str,
    lineno: int,
    inliner: Inliner,
    options: Mapping[str, object] = MappingProxyType({}),
    content: Sequence[str] = (),
) -> tuple[list[nodes.Node], list[str]]:
    del name, lineno, options, content
    msg = f"cite:{text}"
    return [
        inliner.document.reporter.info(msg),
        nodes.emphasis(rawtext, f"[{text}]"),
    ], []


class FakeDomain(Domain):
    name: ClassVar = "cite"
    roles: ClassVar = dict(p=fake_cite, t=fake_cite)


# Role linking to the canonical location in scanpy’s docs


MSG = (
    "Please access this document in its canonical location as the currently accessed page may not be rendered correctly"
)


class CanonicalTutorial(SphinxDirective):
    required_arguments = 1
    has_content = False

    def run(self) -> list[nodes.Node]:
        """\
        Return a banner with a link to the canonical location.

        If the reference cannot be found, crash the build.
        """
        text = self.arguments[0]
        ref = resolve_reference_in_inventory(
            self.env,
            "scanpy",
            addnodes.pending_xref("", reftype="doc", refdomain="std", reftarget=text),
            nodes.inline("", text),
        )
        if ref is None:
            msg = f"Reference to scanpy:{text} not found"
            raise self.warning(msg)
        desc = nodes.inline("", f"{MSG}: ")
        banner = nodes.danger(
            text,
            nodes.paragraph("", "", desc, ref),
            classes=["admonition", "caution"],
        )
        return [banner]


def missing_reference(
    app: Sphinx,
    env: BuildEnvironment,
    node: addnodes.pending_xref,
    contnode: nodes.TextElement,
) -> nodes.Node | None:
    del app, env, contnode
    # ignore known scanpy labels
    if node["reftarget"] in {
        "external-data-integration",
        "eco-data-integration",
        "pl-embeddings",
    } or node["reftarget"].startswith("/tutorials"):
        raise NoUri
    return None


def setup(app: Sphinx) -> None:
    app.add_domain(FakeDomain)
    app.add_role("cite", fake_cite)
    app.add_directive("canonical-tutorial", CanonicalTutorial)
    app.connect("missing-reference", missing_reference)

[rtd-command-info] start-time: 2025-10-14T08:29:04.390721Z, end-time: 2025-10-14T08:29:10.910006Z, duration: 6, exit-code: 0
python -m sphinx -T -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
Running Sphinx v8.2.3
loading translations [en]... done
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
myst v4.0.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions={'colon_fence'}, disable_syntax=[], all_links_external=False, links_external_new_tab=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, fence_as_directive=set(), number_code_blocks=[], title_to_header=False, heading_anchors=3, heading_slug_func=None, html_meta={}, footnote_sort=True, footnote_transition=True, words_per_minute=200, substitutions={}, linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area', enable_checkboxes=False, suppress_warnings=[], highlight_code_blocks=True)
myst-nb v1.3.0: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, eval_name_regex='^[a-zA-Z_][a-zA-Z0-9_]*$', execution_mode='off', execution_cache_path='', execution_excludepatterns=(), execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, scroll_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='remove', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)
Using jupyter-cache at: /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/checkouts/latest/_readthedocs/.jupyter_cache
loading intersphinx inventory 'anndata' from https://anndata.readthedocs.io/en/stable/objects.inv ...
loading intersphinx inventory 'scanpy' from https://scanpy.readthedocs.io/en/latest/objects.inv ...
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 16 source files that are out of date
updating environment: [new config] 16 added, 0 changed, 0 removed
reading sources... [  6%] README
reading sources... [ 12%] basic-scrna-tutorial
reading sources... [ 19%] dask
reading sources... [ 25%] how-to/cell-cycle
reading sources... [ 31%] how-to/knn-transformers
reading sources... [ 38%] how-to/plotting-with-marsilea
reading sources... [ 44%] index
reading sources... [ 50%] integrating-data-using-ingest
reading sources... [ 56%] paga-paul15
reading sources... [ 62%] pbmc3k
reading sources... [ 69%] plotting/advanced
reading sources... [ 75%] plotting/core
reading sources... [ 81%] spatial/basic-analysis
reading sources... [ 88%] spatial/integration-scanorama
reading sources... [ 94%] tutorial_pearson_residuals
reading sources... [100%] visualizing-marker-genes

looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets... 
copying static files... 
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/checkouts/latest/_readthedocs/html/_static/language_data.js
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/checkouts/latest/_readthedocs/html/_static/basic.css
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy-tutorials/checkouts/latest/_readthedocs/html/_static/documentation_options.js
copying static files: done
copying extra files... 
copying extra files: done
copying assets: done
writing output... [  6%] README
writing output... [ 12%] basic-scrna-tutorial
writing output... [ 19%] dask
writing output... [ 25%] how-to/cell-cycle
writing output... [ 31%] how-to/knn-transformers
writing output... [ 38%] how-to/plotting-with-marsilea
writing output... [ 44%] index
writing output... [ 50%] integrating-data-using-ingest
writing output... [ 56%] paga-paul15
writing output... [ 62%] pbmc3k
writing output... [ 69%] plotting/advanced
writing output... [ 75%] plotting/core
writing output... [ 81%] spatial/basic-analysis
writing output... [ 88%] spatial/integration-scanorama
writing output... [ 94%] tutorial_pearson_residuals
writing output... [100%] visualizing-marker-genes

generating indices... genindex done
writing additional pages... search done
copying images... [  1%] _readthedocs/jupyter_execute/2369cb7f97a8853b39251e0ca2ccae217e8613cbea0bf8c599d13adfed54622b.png
copying images... [  1%] _readthedocs/jupyter_execute/3385e74bc3cd67483b2cc40687bbe1089c590fd399799f887c24323ea25ea637.png
copying images... [  2%] _readthedocs/jupyter_execute/83a982f840b154da4420735c806689e16b150ad10ab64372e4ad9c0404390dd3.png
copying images... [  2%] _readthedocs/jupyter_execute/9a168f2d7a68905521ea3fb1ef5a0ac2a22d65e6a5e7c3796a55da1c24c28cb1.png
copying images... [  3%] _readthedocs/jupyter_execute/bd436a0a79afac682ff8132b32d4c90d3f74738d57e07f5743a03a55d9f82f68.png
copying images... [  4%] _readthedocs/jupyter_execute/12e4e27cf02e408effd640d9a5846b20c0b4ea4856511e9af58f5743897aaf38.png
copying images... [  4%] _readthedocs/jupyter_execute/e77d6bf9cd6e938808b2d57ffd8840f0d1aa27233c819a4f8f7b9fdd1d6a44cb.png
copying images... [  5%] _readthedocs/jupyter_execute/610d17bf258b0cc0d840713ebac7867cf292c626df2e807ebd78b459a03ebd28.png
copying images... [  6%] _readthedocs/jupyter_execute/08cb70daba840353bbf8529bf9f27d6121451a8200114c5b77f581df4bbf1a7b.png
copying images... [  6%] _readthedocs/jupyter_execute/2b92963adeb5c28502e023b24967f509deb537d668944e8bec22585c1e66e341.png
copying images... [  7%] _readthedocs/jupyter_execute/7c615842aa3a955f46581c1333bbb91b74a2fb9d38b7f18966a67a39cb1ce0f2.png
copying images... [  8%] _readthedocs/jupyter_execute/17e024239d09ec7c14e90bdb43ea70d7959aab70f7e5d3d2f1620a8f96b77809.png
copying images... [  8%] _readthedocs/jupyter_execute/e103233bd60eaaf71b1bee1293d49a4732a3e96a1e206df311d8166de065a188.png
copying images... [  9%] _readthedocs/jupyter_execute/d016caf498b3b59f81afddca30abfa1354fc0d904eaa8c69776bf7c4e305996e.png
copying images... [  9%] _readthedocs/jupyter_execute/7280e7628c2d51572ba50bdeb1600d6b8579ff7c9fab4536e4a730b1904a789a.png
copying images... [ 10%] _readthedocs/jupyter_execute/7892b8f497b868bf4353f873b5762e96e73c1fa06356dbf9e971f51c5e41aa37.png
copying images... [ 11%] _readthedocs/jupyter_execute/1d57a6a6f897c88b6acfc435bbfeb70798036d973008ed199b9b93305844c407.png
copying images... [ 11%] _readthedocs/jupyter_execute/9201238033dc3d71525ffa4c3fd342931493cbc4154f10dad379a148746ccc9b.png
copying images... [ 12%] _readthedocs/jupyter_execute/ad8d8a4b869e02ab2b2ca1c0cddab9f8150214bfc27e6036a49ab5d854f5983c.png
copying images... [ 12%] _readthedocs/jupyter_execute/ba1422e2b60f77f4c59fc07a3c5ba6e7f359b149f5b44d7efe832e736794d28e.png
copying images... [ 13%] _readthedocs/jupyter_execute/2ad8c5624f6b1b9c504a9523579d15ea2f93a9fd5b609091b38786f953fe046b.png
copying images... [ 14%] _readthedocs/jupyter_execute/da883131a1fe9eb22a8c860e07c36a34e00e64e4442b006d9dde552fc2a40ead.png
copying images... [ 14%] _readthedocs/jupyter_execute/d81354fd0bdf8a72378abcefbc182d8285486fa17d8bd53f0c1f47b6cd1d28c4.png
copying images... [ 15%] _readthedocs/jupyter_execute/2d213968ea3f453f2cae74ae49e17f1fec45a53a476ae046b14010f283eda1a7.png
copying images... [ 16%] _readthedocs/jupyter_execute/4d8511ed85ad86dbf378823408503c528a42a79cd98b0e04f7be0f949decd72d.png
copying images... [ 16%] _readthedocs/jupyter_execute/4391834d507f58697345693f7e02b03afbb9057c3fe0d8386df4a8596d54803d.png
copying images... [ 17%] _readthedocs/jupyter_execute/e1ed4633b95cd6bec57e431a9b5349d46a96ac78dd24940d173cd3fca0428694.png
copying images... [ 18%] _readthedocs/jupyter_execute/a8fd5ce09328052fe68df76c87130f355b9a63a46d81cbfd679a2c87cb6ab4e7.png
copying images... [ 18%] _readthedocs/jupyter_execute/28915039aa4b875685c8d73a7139b94924f2a96e9041916eaeb5d593c3bace11.png
copying images... [ 19%] _readthedocs/jupyter_execute/d4527a4e03bbd6fe4dd09c91d02efc2faf580783935ae9bb5a222db257521af8.png
copying images... [ 19%] _readthedocs/jupyter_execute/6c8974cc011958acd47098c3a1a932191a7876764f737b820d16390a5ec783ac.png
copying images... [ 20%] _readthedocs/jupyter_execute/30aa821349148a81487ab563d4a6a75e3c0e020dca4fb21b0139509cfceea398.png
copying images... [ 21%] _readthedocs/jupyter_execute/3f2faaf30df23cf5c7dc5a27dc4d9e4de270fa4e9c4e5e26fbec40d1c0c387ce.png
copying images... [ 21%] _readthedocs/jupyter_execute/e99df2c4982238793f5b4ac08047e40a7678573d6271fca7f7745ec296d115d9.png
copying images... [ 22%] _readthedocs/jupyter_execute/d98c6dde98a2b75c80d393a309920062f038c5c38183705b573c8e3b538a38b9.png
copying images... [ 22%] _readthedocs/jupyter_execute/61fa512d676d7e19397cd18d4333e7429601886e60f2d54178db1bcdb8e89880.png
copying images... [ 23%] _readthedocs/jupyter_execute/7a6bd5a47fad48feef0b93724055e620e7500410149d6bca969c6b72f9857b6c.png
copying images... [ 24%] _readthedocs/jupyter_execute/b9b0f6d973000a37268783e706bfbb973a9817010756dfd5fb4652496a2a8fb9.png
copying images... [ 24%] _readthedocs/jupyter_execute/628660e3a52a692ea4efaddc5db8b60a1a10880a63a27602a8e82350aaff529a.png
copying images... [ 25%] _readthedocs/jupyter_execute/fa0c98ce178a6f4397cff03e594908df66ade84306568b7660e14258413e837c.png
copying images... [ 26%] _readthedocs/jupyter_execute/b29e2eca5649a24042512f543f420cc021b77b8b9412c5bf77e1529588f06125.png
copying images... [ 26%] _readthedocs/jupyter_execute/effe244049eb70377b606638583e2122c66538497cc7b1509820624883ea8580.png
copying images... [ 27%] _readthedocs/jupyter_execute/199cd4d8abf199025931fd9fd2a043006cf2499cdd39ec71938a70db7ca91073.png
copying images... [ 28%] _readthedocs/jupyter_execute/8f933a8f5774c68d14c62f9eaba449929338793be23ab1fc2b74fd6d3abff70b.png
copying images... [ 28%] _readthedocs/jupyter_execute/2592ae333c0e7528751820f8406144b1f4aaf8eadee0dd37578ddbfb4b80ec08.png
copying images... [ 29%] _readthedocs/jupyter_execute/44ce029c56c32532a6decdf808dd4e4f6b4e41dfad3597791df4a2763b9188cb.png
copying images... [ 29%] _readthedocs/jupyter_execute/43f8eabe0205c95dc1674637d23c1a4912c9de0f0b874fb8fda2d9e61377a492.png
copying images... [ 30%] _readthedocs/jupyter_execute/8d249fd99ddebeb2f583b36f78d8b745ef118be493cdc158ab0b18ee904fb8aa.png
copying images... [ 31%] _readthedocs/jupyter_execute/6c3b6c2fef8ccfbbaa0b16b5baa60d3ce29c14b5d1703c87f6cea468813577a5.png
copying images... [ 31%] _readthedocs/jupyter_execute/86278d709cf8712744109ad897a4c314d2ce612cf45f807bd702a3786a0d9d68.png
copying images... [ 32%] _readthedocs/jupyter_execute/7ab7710568efacc3fcbcc8db7885b30e22db6ad7378ff0066a5bba5f361e065b.png
copying images... [ 32%] _readthedocs/jupyter_execute/8107930e37d0eafac40456afc53660e627a7e8aff939fdad1739e6c92b339ca1.png
copying images... [ 33%] _readthedocs/jupyter_execute/fe4652b5bd85c01a706bcc93db6c339dd350de04d627e4ef5fca03de302e6645.png
copying images... [ 34%] _readthedocs/jupyter_execute/2790ff5a1d746af5c3cddd2b9f6a01dffc82af62fa724a41dba40310b072dadb.png
copying images... [ 34%] _readthedocs/jupyter_execute/1c3c62cdb30781ddde75b5168f150794c33e30a2eac387a07c59109d806a8af1.png
copying images... [ 35%] _readthedocs/jupyter_execute/ce00e90fb7bec4e416b07a495c303c0bb48c5e3322abe38320b4f98e4c7bf8c7.png
copying images... [ 36%] _readthedocs/jupyter_execute/b33128be615a2b323623ecc32c332bab41abbe66c9e4d92e29b14f7e2a65c25f.png
copying images... [ 36%] _readthedocs/jupyter_execute/a785da9a2a7b016091062159786f39353ea020780d58f478c874cd068037a82f.png
copying images... [ 37%] _readthedocs/jupyter_execute/6922a7ae96be672bcf25f5ae2b5461a6edce80dc0ae0c8b2545ab7a2b6cdf33b.png
copying images... [ 38%] _readthedocs/jupyter_execute/7a7d1bfab01e7b0068e7ee926964efeb8d89ffd1cd1b845768be6a7d08e230d2.png
copying images... [ 38%] _readthedocs/jupyter_execute/e1f3cb4f01fdc24afcbd9ed1b8e820fc53a57b919830e78473855a6706b6ca8d.png
copying images... [ 39%] _readthedocs/jupyter_execute/4632938fb4db7519939461a858c1030d618b13b23a2d3c2ed4da00637d2764d9.png
copying images... [ 39%] _readthedocs/jupyter_execute/e2b6fba2faaec41ee9da18283a730844ba9e2eab5a876d3e7c8bb2811df11c01.png
copying images... [ 40%] _readthedocs/jupyter_execute/88aa4fcc109c878a374a7361bbf99b87b1c3ee5ad41957c3c695ade45960c104.png
copying images... [ 41%] _readthedocs/jupyter_execute/70675aebfc80dcc9fc70fb92aa56f1262c94fc1f42438391d3f5b29d971e2106.png
copying images... [ 41%] _readthedocs/jupyter_execute/3a9d72ea573f04a7eb5ee2f1ef2ba2927e434ab65fad265b993a0350053f34db.png
copying images... [ 42%] _readthedocs/jupyter_execute/d2237124534fa2abfee97367a26620a9ff3898e6f0091608f6e5c06b9562c509.png
copying images... [ 42%] _readthedocs/jupyter_execute/b70775c7fa5fbbb119b9ce5cd9c829177e17a29336ff12221903431ddbdb1d89.png
copying images... [ 43%] _readthedocs/jupyter_execute/9309793bba6f25f718659e6ad9c686807b635ecf2fad7aae7c45cbef5ebe8170.png
copying images... [ 44%] _readthedocs/jupyter_execute/019de1cdde7388e76e22ab5f4c813b4a2513c977f75ff179e148db6c183dbe61.png
copying images... [ 44%] _readthedocs/jupyter_execute/b3514cbca07c9d355f66075ace5d4a16aacb62f6147dcd62a736f1e937938bbd.png
copying images... [ 45%] _readthedocs/jupyter_execute/58a1e8c7549f5784c7d394c45d782825e39f1bdf074e3fdded8f85138303dbb8.png
copying images... [ 46%] _readthedocs/jupyter_execute/f70cfa87abeee08705f1c0f68850c7f473f43cd828bd61d505236881b3929ea3.png
copying images... [ 46%] _readthedocs/jupyter_execute/18bc84a5f8b79b26336676391d299a04a557a748cf1d07ed08e6e8cac7da4c96.png
copying images... [ 47%] _readthedocs/jupyter_execute/db7abd6c2ccafd0838aad46c2bc2b048630dbb12171d5517102e5c05ff61195e.png
copying images... [ 48%] _readthedocs/jupyter_execute/dfecea44c594db8a640293ba3b83b768f0f8fffb11feb06bb02a9db87ac88f07.png
copying images... [ 48%] _readthedocs/jupyter_execute/dd9bd20407057e3f381a408e020551eab4a8158f49ffb9a4a5df3182d2245762.png
copying images... [ 49%] _readthedocs/jupyter_execute/5894ed27c5482d0a22c852ad7ec122674a5403866dfc7b981dc53aaa358cd43c.png
copying images... [ 49%] _readthedocs/jupyter_execute/9dde4846823e894d0bd646d737d64babb11955d44121dd294a676ecda2030ff7.png
copying images... [ 50%] _readthedocs/jupyter_execute/56b1242b1fc93eb876458f16b792cfc8f378a7ecc1fd970d8a885833f3d7a134.png
copying images... [ 51%] _readthedocs/jupyter_execute/75e95ac30061d0a6c4b5bbf3d3e5a9680b19ff08269fe2d8ea59ab10a023914e.png
copying images... [ 51%] _readthedocs/jupyter_execute/71c776827198f5562510afe4c17873f7d10a2a35357ffe4aeaa128a78e788e1b.png
copying images... [ 52%] _readthedocs/jupyter_execute/2d65107bba327ff05ed6987cc4c2777b641bed01c1ba09b6cc252a8e67c11998.png
copying images... [ 52%] _readthedocs/jupyter_execute/656a59ad999749dafe447f6f02f9dc776d629197c94870a322466e09d20cb963.png
copying images... [ 53%] _readthedocs/jupyter_execute/1e16be2728eeb5c9ab9542cc63fb3644e3b7c76f944de373115f046e2bddaa41.png
copying images... [ 54%] _readthedocs/jupyter_execute/00e09d35a6edfcfa22e4469241715ce73a888cecd411514d94cd40d382f41e22.png
copying images... [ 54%] _readthedocs/jupyter_execute/fec4e153d5cfd92a83fcba1cc62c2cdec87e8e91e1cb6f6b083ba8bf0f20f406.png
copying images... [ 55%] _readthedocs/jupyter_execute/5a26fa44dcc471d706f3f7ecf801d3cf31743edbb836a393073e937ab85c7237.png
copying images... [ 56%] _readthedocs/jupyter_execute/a7ed97e5192d909da6c3aef055bd93d31530c357a5110bf8219524f59aea1f47.png
copying images... [ 56%] _readthedocs/jupyter_execute/114213c032705aeaf87f170cedba7f54024e21f20b59eff12c40067b3eff9d64.png
copying images... [ 57%] _readthedocs/jupyter_execute/4b80a8ebb2fe694a361810d5829ad423339dec1272a186549a7f918f37259dd9.png
copying images... [ 57%] _readthedocs/jupyter_execute/0f9a0935c010d0ca3f3e91c8fa02275b0be7c9ee8e544f273cbb72a6a0ce3350.png
copying images... [ 58%] _readthedocs/jupyter_execute/03cce8ccfd5513f7ddc46190831f275b68395b19629c77570c13b7bb2ef5c0fd.png
copying images... [ 59%] _readthedocs/jupyter_execute/95d4d301cb8d8f1010e6cd414b366f4226bcaa19ee061e88e0366e862ceca920.png
copying images... [ 59%] _readthedocs/jupyter_execute/d5a3a68c99b881daa67c137c3d7bc76e191396f0a10909e3c86a00a4a5c3075c.png
copying images... [ 60%] _readthedocs/jupyter_execute/fc25f73c02ceb1211cb72c585ad3dc7b21852f9c79f8a4477e41a704f851dbaf.png
copying images... [ 61%] _readthedocs/jupyter_execute/f8a3a5f206cfdbc8fb57787377fb9f7ed9aee4755e69529878a36325eb9d9d3e.png
copying images... [ 61%] _readthedocs/jupyter_execute/014721e47639c9d7f9c1d1a707959e3c7d87bee55dab814b24034ef26bee0cd8.png
copying images... [ 62%] _readthedocs/jupyter_execute/82bf8185351514bbacde2d71cdbed19bd39ad9914092251bd40b07b1cc9ec0dc.png
copying images... [ 62%] _readthedocs/jupyter_execute/47e219415022be69ebab4ddc0dc565d07df0d0e7ec71e622d328381286b0cdb3.png
copying images... [ 63%] _readthedocs/jupyter_execute/bc2843555a0c778a2bc285fea5f772e8357d4f62eff7531e77a08e1c58094456.png
copying images... [ 64%] _readthedocs/jupyter_execute/57be388755512bf1c4bece588c87eeb6fc5c9961ca87791671a11abb9472dcf6.png
copying images... [ 64%] _readthedocs/jupyter_execute/f5fb8a678ef83c003c35c7b020573f9e2aab56cddf2a5a701e28f2735f83422b.png
copying images... [ 65%] _readthedocs/jupyter_execute/d21985bcdf27832fccc189399bdaef7bee22ef093bdd40da4061dc10b9b1baed.png
copying images... [ 66%] _readthedocs/jupyter_execute/2aa081589d93ba1ae17c10722df228186adf87c3c43905fc2b887185d1dde828.png
copying images... [ 66%] _readthedocs/jupyter_execute/95d9bc0fcfc65573d6ce802c62532cbda2ce8ecbc4ad06e1f1a731afa50527b3.png
copying images... [ 67%] _readthedocs/jupyter_execute/02d019ffed26debe94c69e5adbb17bb52797c8b6b9a7a18512cbf8c7d7fb59ac.png
copying images... [ 68%] _readthedocs/jupyter_execute/4d533bc71a9c43e23187261bcaf2bf4886d883f16a387ccd810c160d2568eeb4.png
copying images... [ 68%] _readthedocs/jupyter_execute/cbc036ce11fe42ce6583bcbd1e43942af679d7892b61bca04050a791bacbf83b.png
copying images... [ 69%] _readthedocs/jupyter_execute/477a99eb112ecbc4b0e1c526f14ec5a27a1fb25bb6eae3c49e5ec57142142d0d.png
copying images... [ 69%] _readthedocs/jupyter_execute/8bde7de95a2351bd40bce07c97f561d37524ee1a236956626ee6b2b73d5637bd.png
copying images... [ 70%] _readthedocs/jupyter_execute/6b10b32141a9383cc2d3ec112957ac1cfbee8154c449683ff9be2f612420b6f0.png
copying images... [ 71%] _readthedocs/jupyter_execute/de3758d79d14fbdb767d6a7bd7e4168274b76a9681e24a4e9fd8ecbb3a422b66.png
copying images... [ 71%] _readthedocs/jupyter_execute/b092a195a2e9e7d9ca1d9584a76b5b83ff3ad24c61bf77ffc0b61536bb8a4265.png
copying images... [ 72%] _readthedocs/jupyter_execute/72018721bf8762bbb23bdd5d118ce8c53e823e86f38104920ff825660e8251a2.png
copying images... [ 72%] _readthedocs/jupyter_execute/94d6e876d08841a146bf45d65240823eb8a13b2445b54ed983aea66c19f19d74.png
copying images... [ 73%] _readthedocs/jupyter_execute/eca426ba0c175565e5e34a5fb0e16eb75ea1933a4008b87634d6251931bab373.png
copying images... [ 74%] _readthedocs/jupyter_execute/8a5b9a3a844761620a81333f1f9aa834f42f58dbe1c07556eede789fa73d3821.png
copying images... [ 74%] _readthedocs/jupyter_execute/5cba17b1487a5b9f8e4f82747a7b5402b238afd0f8b9771329cc2cafe762323f.png
copying images... [ 75%] _readthedocs/jupyter_execute/d92ac8cff005d3d675db226476fcf16ce95c0103d3028eb2770e7aa8c5ae5f78.png
copying images... [ 76%] _readthedocs/jupyter_execute/33587a56c76354a9006e5432138fc644f0098910297dce64d387667ac6ad53f6.png
copying images... [ 76%] _readthedocs/jupyter_execute/a8f32a9fad1c3bca6c889411fa6340403d93cff435aa8365331db6d409594068.png
copying images... [ 77%] _readthedocs/jupyter_execute/26e16bbaa5daced14abe7dc8619f966a7bc30f364dba20e461e1a8b3f272ba98.png
copying images... [ 78%] _readthedocs/jupyter_execute/e1d9a1ff1adb3487a37c60f6580f69b4d4c0da2a2d01025db06e83cca852729b.png
copying images... [ 78%] _readthedocs/jupyter_execute/100284609ffeda2f93a6b1a417142135c4b7efe38bdf3c2883769701a7b4299d.png
copying images... [ 79%] _readthedocs/jupyter_execute/9e13c66be5f38fec2706fb5171b52fed4f99fce233114d52b1dec726fbb68961.png
copying images... [ 79%] _readthedocs/jupyter_execute/4d34fb0bcd64d9de622e9376144625d1cee775569df40d6c2953ef9c5c7eb989.png
copying images... [ 80%] _readthedocs/jupyter_execute/23de59d1185f3141aad01dd923dd8751ace35d6223b6dd3283d195b4b5a35bda.png
copying images... [ 81%] _readthedocs/jupyter_execute/d392ef9bf7bccb0cfa92bd7cfd20f15708623f461850d487d268ace8881bacbe.png
copying images... [ 81%] _readthedocs/jupyter_execute/9be6cbb75c066ca431aa1697c02b3bbc6387d91d32376e5cb2fff533a28d0dcf.png
copying images... [ 82%] _readthedocs/jupyter_execute/0f430485100fa1e738391c6c573147391e3b05235873271ca76308ff27873f8b.png
copying images... [ 82%] _readthedocs/jupyter_execute/07218b82400958fd118f851eba7a1c593d3d083f790cbb9b46c10ea4dffa173c.png
copying images... [ 83%] _readthedocs/jupyter_execute/3d1d0aaab00e772893316173eaca085db98615b901a1ac7ade4d25dff68a672e.png
copying images... [ 84%] _readthedocs/jupyter_execute/d468b69af1c7f0af35798c70c6312a99e836c25fd2134bb9edbdbbe4b7e9cded.png
copying images... [ 84%] _readthedocs/jupyter_execute/b12877b4e058b5310108e83e7b492a837cf49fb4203e4b68e48c678b612e34d8.png
copying images... [ 85%] _readthedocs/jupyter_execute/82fb18ee734c4f9cf6e5db6d5dae523a02126bdf21455165648b95d5e1ea9fb9.png
copying images... [ 86%] _readthedocs/jupyter_execute/1b81b6f79760bb6741c2b9380ca11b84580ab2d627bb5951de0c2fa33b0ca737.png
copying images... [ 86%] _readthedocs/jupyter_execute/2f5a89c96ba3e65e79d6df85263d5a0c8d329a9fbbf73368d313d9bd3376ddf7.png
copying images... [ 87%] _readthedocs/jupyter_execute/1a2073e231dc9f8a81d50a9246c9580eac9fe004d3120bc381bbdad20609aa17.png
copying images... [ 88%] _readthedocs/jupyter_execute/6a45269efcf7bf7309f92cdf684948b9e91beb3f8a4c89840b3c60f86714ef5c.png
copying images... [ 88%] _readthedocs/jupyter_execute/8bb74c11eb99e1b14e0880107a9753a8e071e0ec20559b95b1f62d62c305f727.png
copying images... [ 89%] _readthedocs/jupyter_execute/4e2619b85a5be447dac180b3c70c37c168b0c7b0ecd8f69f1be50d7affe1f3cf.png
copying images... [ 89%] _readthedocs/jupyter_execute/f9cb1d875449d2a6faf59b88ce54262f14da3235d5f3e2cfe981905019f54ac6.png
copying images... [ 90%] _readthedocs/jupyter_execute/c338f76d64435e9b5406ec7868ce4ce5ec689c79d85e81a3899b4b1c4e516596.png
copying images... [ 91%] _readthedocs/jupyter_execute/bc93727098434daa1d8fa343ed071898822b86804a4b6b5bde64fcf79cce718d.png
copying images... [ 91%] _readthedocs/jupyter_execute/0aa302a1f4bf30aa75db66d47f0fc3987e884c42844f031120f7dc7031474ab8.png
copying images... [ 92%] _readthedocs/jupyter_execute/bfe25bb9302cd7a75ccbf42ab54fc7f6959353702280cbca997127ffc101a624.png
copying images... [ 92%] _readthedocs/jupyter_execute/30c1584beee6097cbafde187fdf0ba2353becd3323c4576d4f1058810a225ad1.png
copying images... [ 93%] _readthedocs/jupyter_execute/2e1a1edf647822811b189ca73ec66e34a33709aa8699370b77bc0aca99020345.png
copying images... [ 94%] _readthedocs/jupyter_execute/7058d282c4bf34508fb7060e8002a81692aebe757bed798259814c4ba05aad98.png
copying images... [ 94%] _readthedocs/jupyter_execute/c201abda2ed90687a4dfe6dda241b5cfc7a3a42c22b761cb195227a4e228a3f1.png
copying images... [ 95%] _readthedocs/jupyter_execute/523261eadb2e967d20b517a2c1f5ef653e65e8f02a58da98cd5d4bcf08a6e398.png
copying images... [ 96%] _readthedocs/jupyter_execute/72825cab1ce202e45f5ed8347ed1c2be71e66760b993d8f5b0df3021da541f25.png
copying images... [ 96%] _readthedocs/jupyter_execute/13cc6c1d53e9a3aba72799cd93759ce396bc0cf762f3b46d5a762e2e276cd168.png
copying images... [ 97%] _readthedocs/jupyter_execute/5f159fa54af4fc9b8f206c572e1b24b1f1eb24f3711032a9892df784cc5bdd7c.png
copying images... [ 98%] _readthedocs/jupyter_execute/2eba1ec7ea236ae4f0ec8644785ccb3e4c08e44a3615eb1f0fcecbf277c408ae.png
copying images... [ 98%] _readthedocs/jupyter_execute/67a8f588f5e935db5d190240996d7ef24c757b99131454c54c9a4463823244a5.png
copying images... [ 99%] _readthedocs/jupyter_execute/915d74a745633da1ae5a4b91ea8bde5ace438f0cb3c103f3908c86e8166b46b1.png
copying images... [ 99%] _readthedocs/jupyter_execute/2e949f6382ce68273faebe569154569a3ee12f69ebcd948c449e0354db3c3858.png
copying images... [100%] _readthedocs/jupyter_execute/c4c7363df186dd1e25bb52b3ab60a88f27e65c5fd273d15d0e8e90d084b61a10.png

dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded.

The HTML pages are in _readthedocs/html.