Read the Docs build information
Build id: 3244567
Project: institute-for-disease-modeling-laser-measles
Version: latest
Commit: b902698d77fe9dad844247b951f49642384e3ba9
Date: 2025-08-02T01:52:36.335813Z
State: finished
Success: True


[rtd-command-info] start-time: 2025-08-02T01:52:37.116780Z, end-time: 2025-08-02T01:52:37.536097Z, duration: 0, exit-code: 0
git clone --depth 1 https://github.com/InstituteforDiseaseModeling/laser-measles.git .
Cloning into '.'...

[rtd-command-info] start-time: 2025-08-02T01:52:37.641844Z, end-time: 2025-08-02T01:52:38.468982Z, duration: 0, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main
From https://github.com/InstituteforDiseaseModeling/laser-measles
 * [new tag]         v0.7.2-dev0 -> v0.7.2-dev0
 * [new tag]         v0.7.2-dev1 -> v0.7.2-dev1
 * [new tag]         v0.7.2-dev2 -> v0.7.2-dev2
 * [new tag]         v0.7.2-dev3 -> v0.7.2-dev3

[rtd-command-info] start-time: 2025-08-02T01:52:39.103979Z, end-time: 2025-08-02T01:52:39.146081Z, duration: 0, exit-code: 0
git checkout --force origin/main
Note: switching to 'origin/main'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at b902698 chore: tox check

[rtd-command-info] start-time: 2025-08-02T01:52:39.224265Z, end-time: 2025-08-02T01:52:39.256672Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
version: 2
sphinx:
  configuration: docs/conf.py
formats:
  - htmlzip
  - epub
build:
  os: ubuntu-22.04
  tools:
    python: "3.12"
  jobs:
    post_install:
      - python docs/tutorials/convert_tutorials.py
python:
  install:
    - requirements: docs/requirements.txt
    - method: pip
      path: .

# Optionally build your docs in additional formats such as PDF and ePub
# formats:
#    - pdf
#    - epub

[rtd-command-info] start-time: 2025-08-02T01:52:42.966937Z, end-time: 2025-08-02T01:52:43.012457Z, duration: 0, exit-code: 0
asdf global python 3.12.10


[rtd-command-info] start-time: 2025-08-02T01:52:43.319463Z, end-time: 2025-08-02T01:52:44.134710Z, duration: 0, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.12.10.final.0-64 in 536ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0
  activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2025-08-02T01:52:44.217305Z, end-time: 2025-08-02T01:52:52.876682Z, duration: 8, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
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Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (23.1)
Collecting pip
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Collecting setuptools
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Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 67.6.1
    Uninstalling setuptools-67.6.1:
      Successfully uninstalled setuptools-67.6.1
  Attempting uninstall: pip
    Found existing installation: pip 23.1
    Uninstalling pip-23.1:
      Successfully uninstalled pip-23.1
Successfully installed pip-25.2 setuptools-80.9.0

[rtd-command-info] start-time: 2025-08-02T01:52:52.987103Z, end-time: 2025-08-02T01:53:00.705060Z, duration: 7, exit-code: 0
python -m pip install --upgrade --no-cache-dir sphinx
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Installing collected packages: urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, roman-numerals-py, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset_normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx

Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.2 Pygments-2.19.2 alabaster-1.0.0 babel-2.17.0 certifi-2025.7.14 charset_normalizer-3.4.2 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-25.0 requests-2.32.4 roman-numerals-py-3.1.0 snowballstemmer-3.0.1 sphinx-8.2.3 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.5.0

[rtd-command-info] start-time: 2025-08-02T01:53:00.813661Z, end-time: 2025-08-02T01:53:51.934492Z, duration: 51, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
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Installing collected packages: webencodings, wcwidth, pytz, pure-eval, ptyprocess, ply, fastjsonschema, zstandard, xlsxwriter, widgetsnbextension, tzdata, typing-extensions, traitlets, tqdm, tornado, tinycss2, soupsieve, smmap, six, rpds-py, readthedocs-sphinx-search, pyzmq, pyyaml, python-dotenv, pyparsing, pypandoc, psutil, prompt_toolkit, plumbum, platformdirs, pillow, pexpect, parso, pandocfilters, numpy, nest-asyncio, mistune, mdurl, line_profiler, kiwisolver, jupyterlab_widgets, jupyterlab-pygments, jsonpickle, jellyfish, ipython-pygments-lexers, fonttools, executing, et-xmlfile, dill, defusedxml, decorator, debugpy, cycler, comm, bleach, attrs, asttokens, annotated-types, accessible-pygments, typing-inspection, stack_data, scipy, referencing, python-dateutil, pydantic-core, pockets, plantweb, pandoc, openpyxl, multiprocess, memory_profiler, matplotlib-inline, markdown-it-py, jupyter-core, jedi, gitdb, contourpy, beautifulsoup4, sphinxcontrib-napoleon, sphinx-design, sphinx-autodoc-typehints, pydata-sphinx-theme, pydantic, pandas, mdit-py-plugins, matplotlib, jupyter-client, jsonschema-specifications, ipython, gitpython, seaborn, sciris, pydantic-settings, jsonschema, ipywidgets, ipykernel, nbformat, autodoc_pydantic, nbclient, jupytext, nbconvert, nbsphinx

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[rtd-command-info] start-time: 2025-08-02T01:53:52.014360Z, end-time: 2025-08-02T01:54:25.331983Z, duration: 33, exit-code: 0
python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .
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  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/32/d5/f9a850d79b0851d1d4ef6456097579a9005b31fea68726a4ae5f2d82ddd9/threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
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Collecting shellingham>=1.3.0 (from typer>=0.12.0->laser-measles==0.7.2.dev3)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e0/f9/0595336914c5619e5f28a1fb793285925a8cd4b432c9da0a987836c7f822/shellingham-1.5.4-py2.py3-none-any.whl (9.8 kB)
Collecting rich>=10.11.0 (from typer>=0.12.0->laser-measles==0.7.2.dev3)
  Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e3/30/3c4d035596d3cf444529e0b2953ad0466f6049528a879d27534700580395/rich-14.1.0-py3-none-any.whl (243 kB)
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Building wheels for collected packages: laser-measles
  Building wheel for laser-measles (pyproject.toml): started
  Building wheel for laser-measles (pyproject.toml): finished with status 'done'
  Created wheel for laser-measles: filename=laser_measles-0.7.2.dev3-cp312-cp312-linux_x86_64.whl size=146230 sha256=12e59d3b8cb8a7b05e7d7ae37d2ad1dc7cd792c8e1db3086236ef8d705e9c692
  Stored in directory: /tmp/pip-ephem-wheel-cache-f0rim_5a/wheels/62/3a/36/ef67797e01da7b9b6a2f5625cf489f3ab1d1bec0d42e59cb70
Successfully built laser-measles
Installing collected packages: appdirs, threadpoolctl, shellingham, pyshp, pyproj, pycountry, pyarrow, polars, numpy, llvmlite, joblib, graphemeu, diskcache, click, about-time, shapely, rich, pyvd, numba, h5py, alive-progress, typer, scikit-learn, patito, rastertoolkit, laser-core, laser-measles
  Attempting uninstall: numpy
    Found existing installation: numpy 2.3.2
    Uninstalling numpy-2.3.2:
      Successfully uninstalled numpy-2.3.2

Successfully installed about-time-4.2.1 alive-progress-3.3.0 appdirs-1.4.4 click-8.2.1 diskcache-5.6.3 graphemeu-0.7.2 h5py-3.14.0 joblib-1.5.1 laser-core-0.6.0 laser-measles-0.7.2.dev3 llvmlite-0.44.0 numba-0.61.2 numpy-2.2.6 patito-0.8.3 polars-1.32.0 pyarrow-21.0.0 pycountry-24.6.1 pyproj-3.7.1 pyshp-2.3.1 pyvd-1.0.1 rastertoolkit-0.3.12 rich-14.1.0 scikit-learn-1.7.1 shapely-2.1.1 shellingham-1.5.4 threadpoolctl-3.6.0 typer-0.16.0

[rtd-command-info] start-time: 2025-08-02T01:54:25.417181Z, end-time: 2025-08-02T01:54:29.188575Z, duration: 3, exit-code: 0
python docs/tutorials/convert_tutorials.py
[jupytext] Reading tut_spatial_mixing.py in format py
[jupytext] Writing tut_spatial_mixing.ipynb
[jupytext] Reading tut_basic_model.py in format py
[jupytext] Writing tut_basic_model.ipynb
[jupytext] Reading tut_model_structure.py in format py
[jupytext] Writing tut_model_structure.ipynb
[jupytext] Reading tut_traveling_waves.py in format py
[jupytext] Writing tut_traveling_waves.ipynb
[jupytext] Reading tut_scenarios.py in format py
[jupytext] Writing tut_scenarios.ipynb
[jupytext] Reading tut_state_arrays.py in format py
[jupytext] Writing tut_state_arrays.ipynb
[jupytext] Reading tut_creating_component.py in format py
[jupytext] Writing tut_creating_component.ipynb
[jupytext] Reading tut_pydantic_component_parameters.py in format py
[jupytext] Writing tut_pydantic_component_parameters.ipynb
[jupytext] Reading tut_random_numbers.py in format py
[jupytext] Writing tut_random_numbers.ipynb
[jupytext] Reading tut_abm_vital_dynamics.py in format py
[jupytext] Writing tut_abm_vital_dynamics.ipynb
[jupytext] Reading tut_abm_intro.py in format py
[jupytext] Writing tut_abm_intro.ipynb
Converting tut_spatial_mixing.py to notebook...
Successfully converted tut_spatial_mixing.py
Converting tut_basic_model.py to notebook...
Successfully converted tut_basic_model.py
Converting tut_model_structure.py to notebook...
Successfully converted tut_model_structure.py
Converting tut_traveling_waves.py to notebook...
Successfully converted tut_traveling_waves.py
Converting tut_scenarios.py to notebook...
Successfully converted tut_scenarios.py
Converting tut_state_arrays.py to notebook...
Successfully converted tut_state_arrays.py
Converting tut_creating_component.py to notebook...
Successfully converted tut_creating_component.py
Converting tut_pydantic_component_parameters.py to notebook...
Successfully converted tut_pydantic_component_parameters.py
Converting tut_random_numbers.py to notebook...
Successfully converted tut_random_numbers.py
Converting tut_abm_vital_dynamics.py to notebook...
Successfully converted tut_abm_vital_dynamics.py
Converting tut_abm_intro.py to notebook...
Successfully converted tut_abm_intro.py
Successfully converted 11 tutorial files to notebooks

[rtd-command-info] start-time: 2025-08-02T01:54:29.341708Z, end-time: 2025-08-02T01:54:29.378989Z, duration: 0, exit-code: 0
cat docs/conf.py
#
# Configuration file for the Sphinx documentation builder.

import os

import sciris as sc

on_rtd = os.environ.get("READTHEDOCS") == "True"


# -- Project information -----------------------------------------------------

project = "laser-measles"
copyright = f"2024 - {sc.now().year}, Bill & Melinda Gates Foundation. All rights reserved."

# The short X.Y version
version = release = "0.7.2-dev3"


# -- General configuration ---------------------------------------------------

# Add any Sphinx extension module names here
extensions = [
    "sphinx.ext.autodoc",  # Core Sphinx library for auto html doc generation from docstrings
    "sphinx.ext.autosummary",  # Create neat summary tables for modules/classes/methods etc -- causes warnings with Napoleon however
    "sphinx.ext.intersphinx",
    "sphinx.ext.viewcode",  # Add a link to the Python source code for classes, functions etc.
    "sphinx.ext.napoleon",
    "sphinx.ext.autosectionlabel",
    # "sphinx.ext.doctest",  # Enable doctest builder
    "sphinx_autodoc_typehints",  # Automatically document param types (less noise in class signature)
    "sphinx_design",  # Add e.g. grid layout
    "sphinx_search.extension",  # search across multiple docsets in domain
    "nbsphinx",
    "sphinxcontrib.autodoc_pydantic",
]

# Use Google docstrings
napoleon_google_docstring = True

# Configure autosummary
autosummary_generate = True  # Turn on sphinx.ext.autosummary
autosummary_ignore_module_all = False  # Respect __all__
autodoc_member_order = "bysource"  # Keep original ordering
add_module_names = False  # NB, does not work
autodoc_inherit_docstrings = True  # Allow subclasses to inherit docs from parent classes

# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

# Syntax highlighting style
pygments_style = "sphinx"
modindex_common_prefix = ["laser_measles."]

# List of patterns, relative to source directory, to exclude
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints", "tutorials/not_ready/**"]

# Suppress certain warnings
suppress_warnings = ["autosectionlabel.*"]

# Configure pydantic


# -- Options for HTML output -------------------------------------------------

html_theme = "pydata_sphinx_theme"
html_theme_options = {
    "collapse_navigation": False,
    "navigation_depth": 3,
    "show_prev_next": True,
    "icon_links": [
        {"name": "Web", "url": "https://laser-measles.readthedocs.io/en/latest/", "icon": "fas fa-home"},
        {
            "name": "GitHub",
            "url": "https://github.com/InstituteforDiseaseModeling/laser-measles",
            "icon": "fab fa-github-square",
        },
    ],
    "navbar_end": ["theme-switcher", "navbar-icon-links"],
    "secondary_sidebar_items": [],
    "header_links_before_dropdown": 5,
    "footer_start": ["copyright", "footer_start"],
    "footer_end": ["theme-version", "footer_end"],
}
html_sidebars = {
    "**": ["page-toc"],
}
html_logo = "images/idm-logo-transparent.png"
html_favicon = "images/favicon.ico"
html_static_path = ["_static"]
html_baseurl = "https://docs.idmod.org/"
html_context = {
    "rtd_url": "https://docs.idmod.org/",
    "versions_dropdown": {
        "latest": "devel (latest)",
        "stable": "current (stable)",
    },
    "default_mode": "light",
}
# Add any extra paths that contain custom files
if not on_rtd:
    html_extra_path = ["robots.txt"]


# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
html_last_updated_fmt = "%Y-%b-%d"
html_show_sourcelink = True
html_show_sphinx = False
html_copy_source = False
htmlhelp_basename = "laser-measles"


# Add customizations
def setup(app):
    app.add_css_file("theme_overrides.css")


# Modify this to not rerun the Jupyter notebook cells -- usually set by build_docs
nbsphinx_execute = "auto"
nbsphinx_timeout = 600
nbsphinx_allow_errors = True
nbsphinx_execute_arguments = [
    "--InlineBackend.figure_formats={'svg', 'pdf'}",
    "--InlineBackend.rc={'figure.dpi': 96}",
]

# OpenSearch options
html_use_opensearch = "docs.idmod.org/projects/laser-measles/en/latest"

# -- RTD Sphinx search for searching across the entire domain, default child -------------
if os.environ.get("READTHEDOCS") == "True":
    search_project_parent = "institute-for-disease-modeling-idm"
    search_project = os.environ["READTHEDOCS_PROJECT"]
    search_version = os.environ["READTHEDOCS_VERSION"]

    rtd_sphinx_search_default_filter = f"subprojects:{search_project_parent}/{search_version}"

    rtd_sphinx_search_filters = {
        "Search this project": f"project:{search_project}/{search_version}",
        "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}",
    }

# -- Linkcheck configuration -------------------------------------------------
# Configuration for sphinx-build -b linkcheck

# URLs that should be ignored during link checking
linkcheck_ignore = [
    r"https://chatgpt\.com/g/g-674f5fd33aec8191bcdc1a2736fb7c8d-laser-gpt-jenner",  # Requires authentication
    r"https://.*\.idmod\.org/.*",  # Internal IDM links that may require auth
    r"https://.*\.gatesfoundation\.org/.*",  # Gates Foundation internal links
]

# HTTP status codes that should be considered as "working" (not broken)
# 403 = Forbidden (requires authentication)
# 401 = Unauthorized (requires authentication)
linkcheck_allowed_redirects = {
    r"https://.*\.idmod\.org/.*": r".*",
    r"https://.*\.gatesfoundation\.org/.*": r".*",
}

# Timeout for link checking (in seconds)
linkcheck_timeout = 30

# Number of workers for parallel link checking
linkcheck_workers = 5

# Whether to check anchors in links
linkcheck_anchors = False

# Whether to check anchors in relative links
linkcheck_anchors_ignore = [
    r"#.*",  # Ignore all anchor links
]

# Retry count for failed links
linkcheck_retries = 2

[rtd-command-info] start-time: 2025-08-02T01:54:29.470766Z, end-time: 2025-08-02T01:57:31.946141Z, duration: 182, exit-code: 0
python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
Running Sphinx v8.2.3
loading translations [en]... done
making output directory... done
[autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/modules.rst, tutorials.rst, ..., tutorials/tut_basic_model.ipynb, tutorials/tut_creating_component.ipynb, tutorials/tut_model_structure.ipynb, tutorials/tut_pydantic_component_parameters.ipynb, tutorials/tut_random_numbers.ipynb, tutorials/tut_scenarios.ipynb, tutorials/tut_spatial_mixing.ipynb, tutorials/tut_state_arrays.ipynb, tutorials/tut_traveling_waves.ipynb, usage.rst
WARNING: [autosummary] failed to import laser_measles.abm.cli.
Possible hints:
* ImportError: 
* AttributeError: module 'laser_measles.abm' has no attribute 'cli'
* ModuleNotFoundError: No module named 'laser_measles.abm.cli'
WARNING: [autosummary] failed to import laser_measles.pretty_laserframe.
Possible hints:
* ImportError: 
* ModuleNotFoundError: No module named 'laser_measles.pretty_laserframe'
* AttributeError: module 'laser_measles' has no attribute 'pretty_laserframe'
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WARNING: Failed to get a function signature for laser_measles.abm.base: <module 'laser_measles.abm.base' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/abm/base.py'> is not a callable object
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/abm/components/process_infection_seeding.py:docstring of laser_measles.abm.components.process_infection_seeding.InfectionSeedingProcess:30: ERROR: Unexpected indentation. [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/abm/components/process_infection_seeding.py:docstring of laser_measles.abm.components.process_infection_seeding.InfectionSeedingProcess:32: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/abm/components/process_infection_seeding.py:docstring of laser_measles.abm.components.process_infection_seeding.InfectionSeedingProcess:36: ERROR: Unexpected indentation. [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/abm/components/process_infection_seeding.py:docstring of laser_measles.abm.components.process_infection_seeding.InfectionSeedingProcess:38: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
WARNING: Failed to get a function signature for laser_measles.abm.model: <module 'laser_measles.abm.model' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/abm/model.py'> is not a callable object
WARNING: Failed to get a function signature for laser_measles.abm.params: <module 'laser_measles.abm.params' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/abm/params.py'> is not a callable object
WARNING: Failed to get a function signature for laser_measles.abm.utils: <module 'laser_measles.abm.utils' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/abm/utils.py'> is not a callable object
WARNING: Failed to get a function signature for laser_measles.biweekly.base: <module 'laser_measles.biweekly.base' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/base.py'> is not a callable object
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/process_infection.py:docstring of laser_measles.biweekly.components.process_infection.InfectionProcess:9: ERROR: Unexpected indentation. [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/process_infection.py:docstring of laser_measles.biweekly.components.process_infection.InfectionProcess:13: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
WARNING: Failed to get a function signature for laser_measles.biweekly.model: <module 'laser_measles.biweekly.model' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py'> is not a callable object
WARNING: Failed to get a function signature for laser_measles.biweekly.params: <module 'laser_measles.biweekly.params' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/params.py'> is not a callable object
WARNING: Failed to get a function signature for laser_measles.compartmental.base: <module 'laser_measles.compartmental.base' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/compartmental/base.py'> is not a callable object
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/compartmental/components/process_infection.py:docstring of laser_measles.compartmental.components.process_infection.InfectionProcess:9: ERROR: Unexpected indentation. [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/compartmental/components/process_infection.py:docstring of laser_measles.compartmental.components.process_infection.InfectionProcess:13: WARNING: Block quote ends without a blank line; unexpected unindent. [docutils]
WARNING: Failed to get a function signature for laser_measles.compartmental.model: <module 'laser_measles.compartmental.model' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/compartmental/model.py'> is not a callable object
WARNING: Failed to get a function signature for laser_measles.compartmental.params: <module 'laser_measles.compartmental.params' from '/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/compartmental/params.py'> is not a callable object
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst:102: WARNING: autosummary: failed to import cli.
Possible hints:
* AttributeError: module 'laser_measles.abm' has no attribute 'cli'
* KeyError: 'cli'
* ModuleNotFoundError: No module named 'laser_measles.abm.cli'
* ModuleNotFoundError: No module named 'cli'
* ValueError: not enough values to unpack (expected 2, got 1)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst:312: WARNING: autosummary: failed to import pretty_laserframe.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'pretty_laserframe'
* ModuleNotFoundError: No module named 'pretty_laserframe'
* KeyError: 'pretty_laserframe'
* ModuleNotFoundError: No module named 'laser_measles.pretty_laserframe'
* ValueError: not enough values to unpack (expected 2, got 1)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst:342:<autosummary>:1: ERROR: Content block expected for the "raw" directive; none found. [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst:355:<autosummary>:1: ERROR: Content block expected for the "raw" directive; none found. [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/index.rst:16: WARNING: Title underline too short.

Project Information
================== [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/index.rst:16: WARNING: Title underline too short.

Project Information
================== [docutils]
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========================================
Installation and Development Instructions
======================================== [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/installation.rst:19: WARNING: Title underline too short.

Optional Dependencies
==================== [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/installation.rst:38: WARNING: Title underline too short.

Dependency Groups
---------------- [docutils]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/reference/laser_measles.biweekly.rst:12: WARNING: toctree contains reference to nonexisting document 'reference/laser_measles.biweekly.components' [toc.not_readable]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/base.py:docstring of laser_measles.biweekly.base:1: WARNING: duplicate object description of laser_measles.biweekly.base, other instance in api/_autosummary/laser_measles.biweekly.base, use :no-index: for one of them
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/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/_autosummary/laser_measles.biweekly.components.FadeOutTracker.rst: document is referenced in multiple toctrees: ['api/index', 'api/index'], selecting: api/index <- api/_autosummary/laser_measles.biweekly.components.FadeOutTracker
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index
 usage
 tutorials
  tutorials/tut_basic_model
  tutorials/tut_model_structure
  tutorials/tut_abm_intro
  tutorials/tut_scenarios
   tutorials/tut_random_numbers
   tutorials/tut_creating_component
   tutorials/tut_abm_vital_dynamics
   tutorials/tut_spatial_mixing
   tutorials/tut_pydantic_component_parameters
   tutorials/tut_state_arrays
 api/index
  api/_autosummary/laser_measles.components.BaseInitializeEquilibriumStatesProcess
  api/_autosummary/laser_measles.components.BaseVitalDynamicsProcess
  api/_autosummary/laser_measles.components.BaseConstantPopProcess
  api/_autosummary/laser_measles.components.BaseInfectionProcess
   api/_autosummary/laser_measles.components.BaseStateTracker
   api/_autosummary/laser_measles.components.BaseCaseSurveillanceTracker
   api/_autosummary/laser_measles.components.BasePopulationTracker
   api/_autosummary/laser_measles.components.BaseFadeOutTracker
    api/_autosummary/laser_measles.components.component
    api/_autosummary/laser_measles.components.create_component
     api/_autosummary/laser_measles.abm.model
     api/_autosummary/laser_measles.abm.params
     api/_autosummary/laser_measles.abm.base
     api/_autosummary/laser_measles.abm.utils
      api/_autosummary/laser_measles.abm.components.InitializeEquilibriumStatesProcess
      api/_autosummary/laser_measles.abm.components.VitalDynamicsProcess
      api/_autosummary/laser_measles.abm.components.ConstantPopProcess
      api/_autosummary/laser_measles.abm.components.InfectionProcess
      api/_autosummary/laser_measles.abm.components.InfectionSeedingProcess
      api/_autosummary/laser_measles.abm.components.ImportationPressureProcess
      api/_autosummary/laser_measles.abm.components.SIACalendarProcess
       api/_autosummary/laser_measles.abm.components.NoBirthsProcess
       api/_autosummary/laser_measles.abm.components.TransmissionProcess
       api/_autosummary/laser_measles.abm.components.DiseaseProcess
        api/_autosummary/laser_measles.abm.components.StateTracker
        api/_autosummary/laser_measles.abm.components.CaseSurveillanceTracker
        api/_autosummary/laser_measles.abm.components.PopulationTracker
        api/_autosummary/laser_measles.abm.components.FadeOutTracker
         api/_autosummary/laser_measles.compartmental.model
         api/_autosummary/laser_measles.compartmental.params
         api/_autosummary/laser_measles.compartmental.base
          api/_autosummary/laser_measles.compartmental.components.InitializeEquilibriumStatesProcess
          api/_autosummary/laser_measles.compartmental.components.InfectionSeedingProcess
          api/_autosummary/laser_measles.compartmental.components.InfectionProcess
          api/_autosummary/laser_measles.compartmental.components.ImportationPressureProcess
          api/_autosummary/laser_measles.compartmental.components.VitalDynamicsProcess
          api/_autosummary/laser_measles.compartmental.components.ConstantPopProcess
          api/_autosummary/laser_measles.compartmental.components.SIACalendarProcess
           api/_autosummary/laser_measles.compartmental.components.StateTracker
           api/_autosummary/laser_measles.compartmental.components.CaseSurveillanceTracker
           api/_autosummary/laser_measles.compartmental.components.PopulationTracker
           api/_autosummary/laser_measles.compartmental.components.FadeOutTracker
            api/_autosummary/laser_measles.biweekly.model
            api/_autosummary/laser_measles.biweekly.params
            api/_autosummary/laser_measles.biweekly.base
             api/_autosummary/laser_measles.biweekly.components.InitializeEquilibriumStatesProcess
             api/_autosummary/laser_measles.biweekly.components.InfectionSeedingProcess
             api/_autosummary/laser_measles.biweekly.components.InfectionProcess
             api/_autosummary/laser_measles.biweekly.components.VitalDynamicsProcess
             api/_autosummary/laser_measles.biweekly.components.ImportationPressureProcess
             api/_autosummary/laser_measles.biweekly.components.ConstantPopProcess
             api/_autosummary/laser_measles.biweekly.components.SIACalendarProcess
              api/_autosummary/laser_measles.biweekly.components.StateTracker
              api/_autosummary/laser_measles.biweekly.components.CaseSurveillanceTracker
              api/_autosummary/laser_measles.biweekly.components.PopulationTracker
              api/_autosummary/laser_measles.biweekly.components.FadeOutTracker
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                     api/_autosummary/laser_measles.mixing.radiation.RadiationMixing
                     api/_autosummary/laser_measles.mixing.competing_destinations.CompetingDestinationsMixing
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