Read the Docs build information Build id: 3161937 Project: institute-for-disease-modeling-covasim Version: latest Commit: 3c89cd09bf4fd875735431cba5c0c6a3f7952c26 Date: 2025-07-01T05:38:33.115696Z State: cancelled Success: False [rtd-command-info] start-time: 2025-07-01T05:38:33.912026Z, end-time: 2025-07-01T05:38:34.548366Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/InstituteforDiseaseModeling/covasim.git . Cloning into '.'... [rtd-command-info] start-time: 2025-07-01T05:38:34.656791Z, end-time: 2025-07-01T05:38:35.877273Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main From https://github.com/InstituteforDiseaseModeling/covasim * [new tag] v1.4.6 -> v1.4.6 * [new tag] v1.4.7 -> v1.4.7 * [new tag] v1.5.0 -> v1.5.0 * [new tag] v2.1.1 -> v2.1.1 * [new tag] v2.1.2 -> v2.1.2 * [new tag] v3.0.0 -> v3.0.0 * [new tag] v3.0.1 -> v3.0.1 * [new tag] v3.0.2 -> v3.0.2 * [new tag] v3.0.3 -> v3.0.3 * [new tag] v3.0.4 -> v3.0.4 * [new tag] v3.0.5 -> v3.0.5 * [new tag] v3.0.6 -> v3.0.6 * [new tag] v3.0.7 -> v3.0.7 * [new tag] v3.1.0 -> v3.1.0 * [new tag] v3.1.1 -> v3.1.1 * [new tag] v3.1.2 -> v3.1.2 * [new tag] v3.1.3 -> v3.1.3 * [new tag] v3.1.4 -> v3.1.4 * [new tag] v3.1.5 -> v3.1.5 * [new tag] v3.1.6 -> v3.1.6 [rtd-command-info] start-time: 2025-07-01T05:38:36.017539Z, end-time: 2025-07-01T05:38:36.090826Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 3c89cd0 pin scipy version due to https://github.com/statsmodels/statsmodels/issues/9584 [rtd-command-info] start-time: 2025-07-01T05:38:36.240938Z, end-time: 2025-07-01T05:38:36.282420Z, duration: 0, exit-code: 0 cat .readthedocs.yaml # .readthedocs.yaml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-20.04 tools: python: "3.9" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py # If using Sphinx, optionally build your docs in additional formats such as PDF #formats: # - htmlzip # Optionally declare the Python requirements required to build your docs python: install: - requirements: docs/requirements.txt - method: pip path: . [rtd-command-info] start-time: 2025-07-01T05:38:41.897134Z, end-time: 2025-07-01T05:38:42.627402Z, duration: 0, exit-code: 0 asdf global python 3.9.22 [rtd-command-info] start-time: 2025-07-01T05:38:43.197646Z, end-time: 2025-07-01T05:38:44.586445Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.9.22.final.0-64 in 846ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-covasim/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2025-07-01T05:38:44.716381Z, end-time: 2025-07-01T05:38:53.404334Z, duration: 8, exit-code: 0 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webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Downloading tqdm-4.67.1-py3-none-any.whl (78 kB) Downloading wcwidth-0.2.13-py2.py3-none-any.whl (34 kB) Building wheels for collected packages: pandoc DEPRECATION: Building 'pandoc' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pandoc'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for pandoc (setup.py): started Building wheel for pandoc (setup.py): finished with status 'done' Created wheel for pandoc: filename=pandoc-2.4-py3-none-any.whl size=34871 sha256=ea8a7602441e824ea918b74c9082c3387563b437e3e587199bfd29ea92e9d51e Stored in directory: /tmp/pip-ephem-wheel-cache-xluy6lm_/wheels/10/f8/26/ddf077e60385563a3fef3afad369a40b22e59603a700ec23e4 Successfully built pandoc Installing collected packages: webencodings, wcwidth, pytz, pure-eval, ptyprocess, ply, fastjsonschema, tzdata, typing-extensions, traitlets, tqdm, tornado, tinycss2, soupsieve, six, rpds-py, readthedocs-sphinx-search, pyzmq, PyYAML, pyparsing, pypandoc, psutil, prompt-toolkit, plumbum, platformdirs, pillow, pexpect, parso, pandocfilters, numpy, nest-asyncio, Mako, kiwisolver, jupyterlab-pygments, importlib-resources, greenlet, fonttools, executing, defusedxml, decorator, debugpy, cycler, colorlog, bleach, attrs, asttokens, accessible-pygments, stack-data, sqlalchemy, referencing, python-dateutil, plantweb, pandoc, mistune, matplotlib-inline, jupyter-core, jedi, exceptiongroup, contourpy, comm, beautifulsoup4, sphinx-design, sphinx-autodoc-typehints, pydata-sphinx-theme, pandas, matplotlib, jupyter-client, jsonschema-specifications, ipython, alembic, seaborn, optuna, jsonschema, ipykernel, nbformat, nbclient, nbconvert, nbsphinx Successfully installed Mako-1.3.10 PyYAML-6.0.2 accessible-pygments-0.0.5 alembic-1.16.2 asttokens-3.0.0 attrs-25.3.0 beautifulsoup4-4.13.4 bleach-6.2.0 colorlog-6.9.0 comm-0.2.2 contourpy-1.3.0 cycler-0.12.1 debugpy-1.8.14 decorator-5.2.1 defusedxml-0.7.1 exceptiongroup-1.3.0 executing-2.2.0 fastjsonschema-2.21.1 fonttools-4.58.4 greenlet-3.2.3 importlib-resources-6.5.2 ipykernel-6.29.5 ipython-8.18.1 jedi-0.19.2 jsonschema-4.24.0 jsonschema-specifications-2025.4.1 jupyter-client-8.6.3 jupyter-core-5.8.1 jupyterlab-pygments-0.3.0 kiwisolver-1.4.7 matplotlib-3.9.4 matplotlib-inline-0.1.7 mistune-3.1.3 nbclient-0.10.2 nbconvert-7.13.0 nbformat-5.10.4 nbsphinx-0.9.7 nest-asyncio-1.6.0 numpy-2.0.2 optuna-4.4.0 pandas-2.3.0 pandoc-2.4 pandocfilters-1.5.1 parso-0.8.4 pexpect-4.9.0 pillow-11.2.1 plantweb-1.3.0 platformdirs-4.3.8 plumbum-1.9.0 ply-3.11 prompt-toolkit-3.0.51 psutil-7.0.0 ptyprocess-0.7.0 pure-eval-0.2.3 pydata-sphinx-theme-0.16.1 pypandoc-1.15 pyparsing-3.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 pyzmq-27.0.0 readthedocs-sphinx-search-0.3.2 referencing-0.36.2 rpds-py-0.25.1 seaborn-0.13.2 six-1.17.0 soupsieve-2.7 sphinx-autodoc-typehints-2.3.0 sphinx-design-0.6.1 sqlalchemy-2.0.41 stack-data-0.6.3 tinycss2-1.4.0 tornado-6.5.1 tqdm-4.67.1 traitlets-5.14.3 typing-extensions-4.14.0 tzdata-2025.2 wcwidth-0.2.13 webencodings-0.5.1 [rtd-command-info] start-time: None, end-time: None, duration: None, exit-code: None python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir .