Read the Docs build information
Build id: 3104983
Project: institute-for-disease-modeling-laser-measles
Version: latest
Commit: 4e51ef974c0bbf9d26b3e273b0637cab497e4fca
Date: 2025-06-09T15:24:00.822948Z
State: finished
Success: True


[rtd-command-info] start-time: 2025-06-09T15:24:01.646305Z, end-time: 2025-06-09T15:24:02.276916Z, duration: 0, exit-code: 0
git clone --depth 1 https://github.com/InstituteforDiseaseModeling/laser-measles.git .
Cloning into '.'...

[rtd-command-info] start-time: 2025-06-09T15:24:02.332655Z, end-time: 2025-06-09T15:24:03.128588Z, duration: 0, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main
From https://github.com/InstituteforDiseaseModeling/laser-measles
 * [new tag]         v0.5.0     -> v0.5.0

[rtd-command-info] start-time: 2025-06-09T15:24:03.206572Z, end-time: 2025-06-09T15:24:03.275778Z, duration: 0, exit-code: 0
git checkout --force origin/main
Note: switching to 'origin/main'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at 4e51ef9 Bump version: 0.6.0 → 0.6.1

[rtd-command-info] start-time: 2025-06-09T15:24:03.313943Z, end-time: 2025-06-09T15:24:03.352120Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
version: 2
sphinx:
  configuration: docs/conf.py
formats: all
build:
  os: ubuntu-22.04
  tools:
    python: "3.12"
python:
  install:
    - requirements: docs/requirements.txt
    - method: pip
      path: .

# Optionally build your docs in additional formats such as PDF and ePub
# formats:
#    - pdf
#    - epub

[rtd-command-info] start-time: 2025-06-09T15:24:07.932022Z, end-time: 2025-06-09T15:24:07.993541Z, duration: 0, exit-code: 0
asdf global python 3.12.10


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python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.12.10.final.0-64 in 464ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0
  activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2025-06-09T15:24:09.130141Z, end-time: 2025-06-09T15:24:15.113570Z, duration: 5, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
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Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 67.6.1
    Uninstalling setuptools-67.6.1:
      Successfully uninstalled setuptools-67.6.1
  Attempting uninstall: pip
    Found existing installation: pip 23.1
    Uninstalling pip-23.1:
      Successfully uninstalled pip-23.1
Successfully installed pip-25.1.1 setuptools-80.9.0

[rtd-command-info] start-time: 2025-06-09T15:24:15.149814Z, end-time: 2025-06-09T15:24:23.016149Z, duration: 7, exit-code: 0
python -m pip install --upgrade --no-cache-dir sphinx
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Installing collected packages: urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, roman-numerals-py, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx

Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.2 Pygments-2.19.1 alabaster-1.0.0 babel-2.17.0 certifi-2025.4.26 charset-normalizer-3.4.2 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-25.0 requests-2.32.3 roman-numerals-py-3.1.0 snowballstemmer-3.0.1 sphinx-8.2.3 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.4.0

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python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
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Building wheels for collected packages: pandoc
  DEPRECATION: Building 'pandoc' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pandoc'. Discussion can be found at https://github.com/pypa/pip/issues/6334
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Successfully installed accessible-pygments-0.0.5 asttokens-3.0.0 attrs-25.3.0 beautifulsoup4-4.13.4 bleach-6.2.0 comm-0.2.2 contourpy-1.3.2 cycler-0.12.1 debugpy-1.8.14 decorator-5.2.1 defusedxml-0.7.1 dill-0.4.0 et-xmlfile-2.0.0 executing-2.2.0 fastjsonschema-2.21.1 fonttools-4.58.2 gitdb-4.0.12 gitpython-3.1.44 ipykernel-6.29.5 ipython-9.3.0 ipython-pygments-lexers-1.1.1 ipywidgets-8.1.7 jedi-0.19.2 jellyfish-1.2.0 jsonpickle-4.1.1 jsonschema-4.24.0 jsonschema-specifications-2025.4.1 jupyter-client-8.6.3 jupyter-core-5.8.1 jupyterlab-pygments-0.3.0 jupyterlab_widgets-3.0.15 kiwisolver-1.4.8 line_profiler-4.2.0 matplotlib-3.10.3 matplotlib-inline-0.1.7 memory_profiler-0.61.0 mistune-3.1.3 multiprocess-0.70.18 nbclient-0.10.2 nbconvert-7.16.6 nbformat-5.10.4 nbsphinx-0.9.6 nest-asyncio-1.6.0 numpy-2.3.0 openpyxl-3.1.5 pandas-2.3.0 pandoc-2.4 pandocfilters-1.5.1 parso-0.8.4 pexpect-4.9.0 pillow-11.2.1 plantweb-1.3.0 platformdirs-4.3.8 plumbum-1.9.0 ply-3.11 pockets-0.9.1 prompt_toolkit-3.0.51 psutil-7.0.0 ptyprocess-0.7.0 pure-eval-0.2.3 pydata-sphinx-theme-0.16.1 pypandoc-1.15 pyparsing-3.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 pyyaml-6.0.2 pyzmq-26.4.0 readthedocs-sphinx-search-0.3.2 referencing-0.36.2 rpds-py-0.25.1 scipy-1.15.3 sciris-3.2.1 six-1.17.0 smmap-5.0.2 soupsieve-2.7 sphinx-autodoc-typehints-3.2.0 sphinx-design-0.6.1 sphinxcontrib-napoleon-0.7 stack_data-0.6.3 tinycss2-1.4.0 tornado-6.5.1 tqdm-4.67.1 traitlets-5.14.3 typing-extensions-4.14.0 tzdata-2025.2 wcwidth-0.2.13 webencodings-0.5.1 widgetsnbextension-4.0.14 xlsxwriter-3.2.3 zstandard-0.23.0

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Building wheels for collected packages: laser-measles, grapheme
  Building wheel for laser-measles (pyproject.toml): started
  Building wheel for laser-measles (pyproject.toml): finished with status 'done'
  Created wheel for laser-measles: filename=laser_measles-0.6.1-cp312-cp312-linux_x86_64.whl size=4465978 sha256=0bb33d31b47f309722ef55fdfe91f7fa33106c4085e79efbcbcf7e13e7e65472
  Stored in directory: /tmp/pip-ephem-wheel-cache-msa3eqj2/wheels/62/3a/36/ef67797e01da7b9b6a2f5625cf489f3ab1d1bec0d42e59cb70
  DEPRECATION: Building 'grapheme' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'grapheme'. Discussion can be found at https://github.com/pypa/pip/issues/6334
  Building wheel for grapheme (setup.py): started
  Building wheel for grapheme (setup.py): finished with status 'done'
  Created wheel for grapheme: filename=grapheme-0.6.0-py3-none-any.whl size=210136 sha256=2dab55897f9104408fdae09f95b2cb541b236540e2d3fb60415883f4e129a650
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Successfully built laser-measles grapheme
Installing collected packages: grapheme, appdirs, typing-inspection, pydantic-core, pycountry, pyarrow, polars, numpy, llvmlite, diskcache, click, annotated-types, about-time, pydantic, numba, h5py, alive-progress, laser-core, laser-measles
  Attempting uninstall: numpy
    Found existing installation: numpy 2.3.0
    Uninstalling numpy-2.3.0:
      Successfully uninstalled numpy-2.3.0

Successfully installed about-time-4.2.1 alive-progress-3.2.0 annotated-types-0.7.0 appdirs-1.4.4 click-8.2.1 diskcache-5.6.3 grapheme-0.6.0 h5py-3.14.0 laser-core-0.5.1 laser-measles-0.6.1 llvmlite-0.44.0 numba-0.61.2 numpy-2.2.6 polars-1.30.0 pyarrow-20.0.0 pycountry-24.6.1 pydantic-2.11.5 pydantic-core-2.33.2 typing-inspection-0.4.1

[rtd-command-info] start-time: 2025-06-09T15:25:42.740337Z, end-time: 2025-06-09T15:25:42.777208Z, duration: 0, exit-code: 0
cat docs/conf.py
# -*- coding: utf-8 -*-
#
# Configuration file for the Sphinx documentation builder.

import os
import sys
import sciris as sc

on_rtd = os.environ.get('READTHEDOCS') == 'True'


# -- Project information -----------------------------------------------------

project = 'laser-measles'
copyright = f'2024 - {sc.now().year}, Bill & Melinda Gates Foundation. All rights reserved.'

# The short X.Y version
version = release = "0.6.1"


# -- General configuration ---------------------------------------------------

# Add any Sphinx extension module names here
extensions = [
    "sphinx.ext.autodoc",  # Core Sphinx library for auto html doc generation from docstrings
    "sphinx.ext.autosummary",  # Create neat summary tables for modules/classes/methods etc -- causes warnings with Napoleon however
    "sphinx.ext.intersphinx",
    "sphinx.ext.viewcode",  # Add a link to the Python source code for classes, functions etc.
    "sphinx.ext.napoleon",
    "sphinx.ext.autosectionlabel",
    "sphinx.ext.doctest",  # Enable doctest builder
    "sphinx_autodoc_typehints",  # Automatically document param types (less noise in class signature)
    "sphinx_design", # Add e.g. grid layout
    'sphinx_search.extension', # search across multiple docsets in domain
    "nbsphinx",
]

# Use Google docstrings
napoleon_google_docstring = True

# Configure autosummary
autosummary_generate = True  # Turn on sphinx.ext.autosummary
autosummary_ignore_module_all = False # Respect __all__
autodoc_member_order = 'bysource' # Keep original ordering
add_module_names = False  # NB, does not work
autodoc_inherit_docstrings = False # Stops sublcasses from including docs from parent classes

# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

# Syntax highlighting style
pygments_style = "sphinx"
modindex_common_prefix = ["laser_measles."]

# List of patterns, relative to source directory, to exclude
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"]

# Suppress certain warnings
suppress_warnings = ['autosectionlabel.*']


# -- Options for HTML output -------------------------------------------------

html_theme = "pydata_sphinx_theme"
html_theme_options = {
    "collapse_navigation": False,
    "navigation_depth": 3,
    "show_prev_next": True,
    "icon_links": [
        {"name": "Web", "url": "https://starsim.org", "icon": "fas fa-home"},
        {
            "name": "GitHub",
            "url": "https://github.com/InstituteforDiseaseModeling/laser-measles",
            "icon": "fab fa-github-square",
        },
    ],
    "navbar_end": ["theme-switcher", "navbar-icon-links"],
    "secondary_sidebar_items": ["navbar-side"],
    "header_links_before_dropdown": 5,
    "footer_start": ["copyright", "footer_start"],
    "footer_end": ["theme-version", "footer_end"],
}
html_sidebars = {
    "**": ["sidebar-nav-bs", "page-toc"],
}
html_logo = "images/idm-logo-transparent.png"
html_favicon = "images/favicon.ico"
html_static_path = ['_static']
html_baseurl = "https://docs.idmod.org/"
html_context = {
    'rtd_url': 'https://docs.idmod.org/',
    "versions_dropdown": {
        "latest": "devel (latest)",
        "stable": "current (stable)",
    },
    "default_mode": "light",
}
# Add any extra paths that contain custom files
if not on_rtd:
    html_extra_path = ['robots.txt']


# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
html_last_updated_fmt = '%Y-%b-%d'
html_show_sourcelink = True
html_show_sphinx = False
html_copy_source = False
htmlhelp_basename = 'laser-measles'

# Add customizations
def setup(app):
    app.add_css_file("theme_overrides.css")


# Modify this to not rerun the Jupyter notebook cells -- usually set by build_docs
nbsphinx_execute = 'always'
nbsphinx_timeout = 300

# OpenSearch options
html_use_opensearch = 'docs.idmod.org/projects/laser-measles/en/latest'

# -- RTD Sphinx search for searching across the entire domain, default child -------------
if os.environ.get('READTHEDOCS') == 'True':

    search_project_parent = "institute-for-disease-modeling-idm"
    search_project = os.environ["READTHEDOCS_PROJECT"]
    search_version = os.environ["READTHEDOCS_VERSION"]

    rtd_sphinx_search_default_filter = f"subprojects:{search_project}/{search_version}"

    rtd_sphinx_search_filters = {
        "Search this project": f"project:{search_project}/{search_version}",
        "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}",
    }

[rtd-command-info] start-time: 2025-06-09T15:25:42.829936Z, end-time: 2025-06-09T15:26:37.292928Z, duration: 54, exit-code: 0
python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
Running Sphinx v8.2.3
Matplotlib is building the font cache; this may take a moment.
loading translations [en]... done
making output directory... done
[autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst
WARNING: Failed to import laser_measles.biweekly.components.routine_immunization.
Possible hints:
* ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'
* AttributeError: module 'laser_measles.biweekly.components' has no attribute 'routine_immunization'
WARNING: Failed to import laser_measles.demographics.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.admin_shapefile.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.base.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.cache.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.gadm.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.raster_patch.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.shapefiles.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.generic.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'generic'
WARNING: Failed to import laser_measles.generic.metapop.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'generic'
WARNING: Failed to import laser_measles.generic.model.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'generic'
WARNING: Failed to import laser_measles.generic.params.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'generic'
WARNING: Failed to import laser_measles.nigeria.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
WARNING: Failed to import laser_measles.nigeria.lgas.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
WARNING: Failed to import laser_measles.nigeria.metapop.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
WARNING: Failed to import laser_measles.nigeria.model.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
WARNING: Failed to import laser_measles.nigeria.params.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/nbsphinx-code-cells.css
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 15 source files that are out of date
updating environment: [new config] 15 added, 0 changed, 0 removed
reading sources... [  7%] api/index
reading sources... [ 13%] authors
reading sources... [ 20%] changelog
reading sources... [ 27%] contributing
reading sources... [ 33%] index
reading sources... [ 40%] installation
reading sources... [ 47%] readme
reading sources... [ 53%] reference/laser_measles
reading sources... [ 60%] reference/laser_measles.biweekly
reading sources... [ 67%] reference/laser_measles.biweekly.components
reading sources... [ 73%] reference/laser_measles.demographics
reading sources... [ 80%] reference/laser_measles.generic
reading sources... [ 87%] reference/laser_measles.nigeria
reading sources... [ 93%] reference/modules
reading sources... [100%] usage

/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/__init__.py:docstring of laser_measles.Births.initializers:1: WARNING: duplicate object description of laser_measles.Births.initializers, other instance in reference/laser_measles, use :no-index: for one of them
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/__init__.py:docstring of laser_measles.Births.metrics:1: WARNING: duplicate object description of laser_measles.Births.metrics, other instance in reference/laser_measles, use :no-index: for one of them
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/births.py:docstring of laser_measles.births.Births.initializers:1: WARNING: duplicate object description of laser_measles.births.Births.initializers, other instance in reference/laser_measles, use :no-index: for one of them
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/births.py:docstring of laser_measles.births.Births.metrics:1: WARNING: duplicate object description of laser_measles.births.Births.metrics, other instance in reference/laser_measles, use :no-index: for one of them
WARNING: autodoc: failed to import module 'routine_immunization' from module 'laser_measles.biweekly.components'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301\n    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.admin_shapefile' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.base' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.cache' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.gadm' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.raster_patch' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.shapefiles' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.metapop' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.model' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.params' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
looking for now-outdated files... WARNING: autodoc: failed to import module 'nigeria' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.lgas' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.metapop' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.model' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.params' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
none found
pickling environment... done
checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included]
done
preparing documents... done
copying assets... 
copying static files... 
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/language_data.js
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/basic.css
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/documentation_options.js
copying static files: done
copying extra files... 
copying extra files: done
copying assets: done
writing output... [  7%] api/index
writing output... [ 13%] authors
writing output... [ 20%] changelog
writing output... [ 27%] contributing
writing output... [ 33%] index
writing output... [ 40%] installation
writing output... [ 47%] readme
writing output... [ 53%] reference/laser_measles
writing output... [ 60%] reference/laser_measles.biweekly
writing output... [ 67%] reference/laser_measles.biweekly.components
writing output... [ 73%] reference/laser_measles.demographics
writing output... [ 80%] reference/laser_measles.generic
writing output... [ 87%] reference/laser_measles.nigeria
writing output... [ 93%] reference/modules
writing output... [100%] usage

/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/reference/laser_measles.biweekly.rst:37: WARNING: more than one target found for cross-reference 'BiweeklyParams': laser_measles.biweekly.BiweeklyParams, laser_measles.biweekly.params.BiweeklyParams [ref.python]
generating indices... genindex py-modindex done
copying linked files... 
copying notebooks ... 
highlighting module code... [  6%] laser_measles._core
highlighting module code... [ 11%] laser_measles.antibodies
highlighting module code... [ 17%] laser_measles.births
highlighting module code... [ 22%] laser_measles.biweekly.base
highlighting module code... [ 28%] laser_measles.biweekly.components.fadeout_tracker
highlighting module code... [ 33%] laser_measles.biweekly.components.infection
highlighting module code... [ 39%] laser_measles.biweekly.components.vital_dynamics
highlighting module code... [ 44%] laser_measles.biweekly.mixing
highlighting module code... [ 50%] laser_measles.biweekly.model
highlighting module code... [ 56%] laser_measles.biweekly.params
highlighting module code... [ 61%] laser_measles.incubation
highlighting module code... [ 67%] laser_measles.infection
highlighting module code... [ 72%] laser_measles.model
highlighting module code... [ 78%] laser_measles.mortality
highlighting module code... [ 83%] laser_measles.routine
highlighting module code... [ 89%] laser_measles.susceptibility
highlighting module code... [ 94%] laser_measles.transmission
highlighting module code... [100%] laser_measles.utils

writing additional pages... search opensearch done
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dumping object inventory... done
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/js/rtd_search_config.js
build succeeded, 40 warnings.

The HTML pages are in ../_readthedocs/html.

[rtd-command-info] start-time: 2025-06-09T15:26:37.340811Z, end-time: 2025-06-09T15:26:47.721111Z, duration: 10, exit-code: 0
python -m sphinx -T -b singlehtml -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip
Running Sphinx v8.2.3
loading translations [en]... done
making output directory... done
loading pickled environment... The configuration has changed (6 options: 'html_permalinks_icon', 'html_static_path', 'html_theme_options', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path', ...)
done
[autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst
WARNING: Failed to import laser_measles.nigeria.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.lgas.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.metapop.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.model.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.params.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.generic.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'generic'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.generic.metapop.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'generic'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.generic.model.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'generic'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.generic.params.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'generic'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.biweekly.components.routine_immunization.
Possible hints:
* ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'
* AttributeError: module 'laser_measles.biweekly.components' has no attribute 'routine_immunization'
WARNING: Failed to import laser_measles.demographics.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.admin_shapefile.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.base.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.cache.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.gadm.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.raster_patch.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.shapefiles.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/nbsphinx-code-cells.css
building [mo]: targets for 0 po files that are out of date
writing output... 
building [singlehtml]: all documents
updating environment: 0 added, 4 changed, 0 removed
reading sources... [ 25%] reference/laser_measles.biweekly.components
reading sources... [ 50%] reference/laser_measles.demographics
reading sources... [ 75%] reference/laser_measles.generic
reading sources... [100%] reference/laser_measles.nigeria

WARNING: autodoc: failed to import module 'routine_immunization' from module 'laser_measles.biweekly.components'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301\n    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.admin_shapefile' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.base' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.cache' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.gadm' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.raster_patch' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.shapefiles' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.metapop' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.model' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.params' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.lgas' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.metapop' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.model' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.params' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included]
done
preparing documents... done
copying assets... 
copying static files... 
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/language_data.js
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/basic.css
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/documentation_options.js
copying static files: done
copying extra files... 
copying extra files: done
copying assets: done
assembling single document... 
index
 readme
 installation
 usage
 contributing
 authors
 changelog
 reference/modules
  reference/laser_measles
   reference/laser_measles.biweekly
    reference/laser_measles.biweekly.components
   reference/laser_measles.demographics
   reference/laser_measles.generic
   reference/laser_measles.nigeria
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/reference/laser_measles.biweekly.rst:37: WARNING: more than one target found for cross-reference 'BiweeklyParams': laser_measles.biweekly.BiweeklyParams, laser_measles.biweekly.params.BiweeklyParams [ref.python]
assembling single document: done
writing... done
writing additional files...  opensearchdone
copying static files... 
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/language_data.js
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/basic.css
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/documentation_options.js
copying static files: done
copying extra files... 
copying extra files: done
dumping object inventory... done
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/js/rtd_search_config.js
build succeeded, 36 warnings.

The HTML page is in ../_readthedocs/htmlzip.

[rtd-command-info] start-time: 2025-06-09T15:26:48.250650Z, end-time: 2025-06-09T15:26:59.855221Z, duration: 11, exit-code: 0
python -m sphinx -T -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf
Running Sphinx v8.2.3
loading translations [en]... done
making output directory... done
loading pickled environment... The configuration has changed (6 options: 'html_permalinks_icon', 'html_static_path', 'html_theme_options', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path', ...)
done
[autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst
WARNING: Failed to import laser_measles.demographics.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.admin_shapefile.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.base.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.cache.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.gadm.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.raster_patch.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.demographics.shapefiles.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'demographics'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.lgas.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.metapop.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.model.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.nigeria.params.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.generic.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'generic'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.generic.metapop.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'generic'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.generic.model.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'generic'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.generic.params.
Possible hints:
* AttributeError: module 'laser_measles' has no attribute 'generic'
* ModuleNotFoundError: No module named 'shapefile'
WARNING: Failed to import laser_measles.biweekly.components.routine_immunization.
Possible hints:
* AttributeError: module 'laser_measles.biweekly.components' has no attribute 'routine_immunization'
* ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'
building [mo]: targets for 0 po files that are out of date
writing output... 
building [latex]: all documents
updating environment: 0 added, 4 changed, 0 removed
reading sources... [ 25%] reference/laser_measles.biweekly.components
reading sources... [ 50%] reference/laser_measles.demographics
reading sources... [ 75%] reference/laser_measles.generic
reading sources... [100%] reference/laser_measles.nigeria

WARNING: autodoc: failed to import module 'routine_immunization' from module 'laser_measles.biweekly.components'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301\n    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.admin_shapefile' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.base' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.cache' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.gadm' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.raster_patch' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.shapefiles' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.metapop' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.model' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.params' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
looking for now-outdated files... WARNING: autodoc: failed to import module 'nigeria' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.lgas' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.metapop' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.model' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.params' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
none found
pickling environment... done
checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included]
done
preparing documents... done
copying assets... 
copying TeX support files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/latexmkrc
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/Makefile
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/make.bat
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/latexmkjarc
done
copying assets: done
processing laser-measles.tex... 
index
 readme
 installation
 usage
 contributing
 authors
 changelog
 reference/modules
  reference/laser_measles
   reference/laser_measles.biweekly
    reference/laser_measles.biweekly.components
   reference/laser_measles.demographics
   reference/laser_measles.generic
   reference/laser_measles.nigeria

resolving references...
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/reference/laser_measles.biweekly.rst:37: WARNING: more than one target found for cross-reference 'BiweeklyParams': laser_measles.biweekly.BiweeklyParams, laser_measles.biweekly.params.BiweeklyParams [ref.python]
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:16: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://readthedocs.org/projects/laser-measles/badge/?style=flat)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:20: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://github.com/InstituteforDiseaseModeling/laser-measles/actions/workflows/github-actions.yml/badge.svg)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:24: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://codecov.io/gh/InstituteforDiseaseModeling/laser-measles/branch/main/graphs/badge.svg?branch=main)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:28: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/pypi/v/laser-measles.svg)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:32: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/pypi/wheel/laser-measles.svg)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:36: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/pypi/pyversions/laser-measles.svg)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:40: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/pypi/implementation/laser-measles.svg)
/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:44: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/github/commits-since/InstituteforDiseaseModeling/laser-measles/v0.6.1.svg)
processing laser-measles.tex: done
writing... done
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/sphinxmessages.sty
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/_static/js/rtd_search_config.js
build succeeded, 44 warnings.

The LaTeX files are in ../_readthedocs/pdf.
Run 'make' in that directory to run these through (pdf)latex
(use `make latexpdf' here to do that automatically).

[rtd-command-info] start-time: 2025-06-09T15:26:59.908832Z, end-time: 2025-06-09T15:26:59.948416Z, duration: 0, exit-code: 0
cat latexmkrc
$latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S';
$xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S';
$makeindex = 'makeindex -s python.ist %O -o %D %S';
add_cus_dep( "glo", "gls", 0, "makeglo" );
sub makeglo {
 return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" );
}

[rtd-command-info] start-time: 2025-06-09T15:26:59.988226Z, end-time: 2025-06-09T15:27:13.859755Z, duration: 13, exit-code: 0
latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-laser-measles -interaction=nonstopmode
Use of uninitialized value in concatenation (.) or string at (eval 10) line 1.
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Rc files read:
  /etc/LatexMk
  latexmkrc
  latexmkrc
Latexmk: This is Latexmk, John Collins, 20 November 2021, version: 4.76.
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'laser-measles.tex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex   -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-laser-measles"  "laser-measles.tex"'
------------
Latexmk: applying rule 'pdflatex'...
This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex)
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entering extended mode
(./laser-measles.tex
LaTeX2e <2021-11-15> patch level 1
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Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual)
(/usr/share/texlive/texmf-dist/tex/latex/base/report.cls
Document Class: report 2021/10/04 v1.4n Standard LaTeX document class
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(/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty<<t1.cmap>>)
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty
For additional information on amsmath, use the `?' option.
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
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(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty))
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Chapter 1.

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Chapter 2.
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Chapter 3.
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Chapter 4.
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Chapter 5.
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Chapter 6.
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Chapter 7.
[15] [16] [17] [18] [19] [20] [21]

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[24]

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[44]
Chapter 8.
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Chapter 1.

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Chapter 1.

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\T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo
rm-ing to [\T1/qtm/m/it/10 Con-fig-
[29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43]
[44]
Chapter 8.
[45] [46]
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0 ,
[47] (./institute-for-disease-modeling-laser-measles.ind [48]
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[49]
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n mod-ule

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nalAn-ti-bod-ies static

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le
[50]
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 mod-ule

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 mod-ule

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),
[51]) (./institute-for-disease-modeling-laser-measles.aux) )
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Output written on institute-for-disease-modeling-laser-measles.pdf (55 pages, 2
77044 bytes).
Transcript written on institute-for-disease-modeling-laser-measles.log.
Latexmk: Index file 'institute-for-disease-modeling-laser-measles.idx' was written
Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf'
Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'institute-for-disease-modeling-laser-measles.log' for details
Latexmk: Examining 'institute-for-disease-modeling-laser-measles.log'
=== TeX engine is 'pdfTeX'
Latexmk: Errors, in force_mode: so I tried finishing targets

[rtd-command-info] start-time: 2025-06-09T15:27:14.062544Z, end-time: 2025-06-09T15:27:25.757758Z, duration: 11, exit-code: 0
python -m sphinx -T -b epub -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/epub
Running Sphinx v8.2.3
loading translations [en]... done
making output directory... done
loading pickled environment... The configuration has changed (4 options: 'html_static_path', 'latex_documents', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path')
done
[autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst
WARNING: Failed to import laser_measles.biweekly.components.routine_immunization.
Possible hints:
* AttributeError: module 'laser_measles.biweekly.components' has no attribute 'routine_immunization'
* ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'
WARNING: Failed to import laser_measles.generic.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'generic'
WARNING: Failed to import laser_measles.generic.metapop.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'generic'
WARNING: Failed to import laser_measles.generic.model.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'generic'
WARNING: Failed to import laser_measles.generic.params.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'generic'
WARNING: Failed to import laser_measles.demographics.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.admin_shapefile.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.base.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.cache.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.gadm.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.raster_patch.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.demographics.shapefiles.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'demographics'
WARNING: Failed to import laser_measles.nigeria.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
WARNING: Failed to import laser_measles.nigeria.lgas.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
WARNING: Failed to import laser_measles.nigeria.metapop.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
WARNING: Failed to import laser_measles.nigeria.model.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
WARNING: Failed to import laser_measles.nigeria.params.
Possible hints:
* ModuleNotFoundError: No module named 'shapefile'
* AttributeError: module 'laser_measles' has no attribute 'nigeria'
Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/_static/nbsphinx-code-cells.css
building [mo]: targets for 0 po files that are out of date
writing output... 
building [epub]: targets for 15 source files that are out of date
updating environment: 0 added, 4 changed, 0 removed
reading sources... [ 25%] reference/laser_measles.biweekly.components
reading sources... [ 50%] reference/laser_measles.demographics
reading sources... [ 75%] reference/laser_measles.generic
reading sources... [100%] reference/laser_measles.nigeria

WARNING: autodoc: failed to import module 'routine_immunization' from module 'laser_measles.biweekly.components'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 172, in import_module\n    raise ModuleNotFoundError(msg, name=modname)  # NoQA: TRY301\n    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.admin_shapefile' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.base' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.cache' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.gadm' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.raster_patch' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'demographics.shapefiles' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.metapop' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.model' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'generic.params' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.lgas' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.metapop' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.model' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
WARNING: autodoc: failed to import module 'nigeria.params' from module 'laser_measles'; the following exception was raised:
['Traceback (most recent call last):\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n    module = import_module(modname, try_reload=True)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n    module = importlib.import_module(modname)\n             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n    return _bootstrap._gcd_import(name[level:], package, level)\n           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', '  File "<frozen importlib._bootstrap>", line 1387, in _gcd_import\n', '  File "<frozen importlib._bootstrap>", line 1360, in _find_and_load\n', '  File "<frozen importlib._bootstrap>", line 1331, in _find_and_load_unlocked\n', '  File "<frozen importlib._bootstrap>", line 935, in _load_unlocked\n', '  File "<frozen importlib._bootstrap_external>", line 999, in exec_module\n', '  File "<frozen importlib._bootstrap>", line 488, in _call_with_frames_removed\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in <module>\n    from .metapop import get_scenario\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in <module>\n    from laser_measles.demographics import shapefiles\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in <module>\n    from . import base\n', '  File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in <module>\n    from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object]
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