Read the Docs build information Build id: 3102652 Project: institute-for-disease-modeling-laser-measles Version: latest Commit: 62339601baf0863ba564c263b0bcc8450c8cc74c Date: 2025-06-07T06:17:07.320848Z State: finished Success: True [rtd-command-info] start-time: 2025-06-07T06:17:08.127783Z, end-time: 2025-06-07T06:17:08.794041Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/InstituteforDiseaseModeling/laser-measles.git . Cloning into '.'... [rtd-command-info] start-time: 2025-06-07T06:17:08.843303Z, end-time: 2025-06-07T06:17:09.716280Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main From https://github.com/InstituteforDiseaseModeling/laser-measles * [new tag] v0.5.0 -> v0.5.0 [rtd-command-info] start-time: 2025-06-07T06:17:09.799328Z, end-time: 2025-06-07T06:17:09.864257Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 6233960 publish pypi quickfix (#19) [rtd-command-info] start-time: 2025-06-07T06:17:09.905175Z, end-time: 2025-06-07T06:17:09.940402Z, duration: 0, exit-code: 0 cat .readthedocs.yml # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details version: 2 sphinx: configuration: docs/conf.py formats: all build: os: ubuntu-22.04 tools: python: "3.12" python: install: - requirements: docs/requirements.txt - method: pip path: . # Optionally build your docs in additional formats such as PDF and ePub # formats: # - pdf # - epub [rtd-command-info] start-time: 2025-06-07T06:17:14.581846Z, end-time: 2025-06-07T06:17:14.638969Z, duration: 0, exit-code: 0 asdf global python 3.12.10 [rtd-command-info] start-time: 2025-06-07T06:17:14.989402Z, end-time: 2025-06-07T06:17:15.737413Z, duration: 0, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.12.10.final.0-64 in 467ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2025-06-07T06:17:15.795433Z, end-time: 2025-06-07T06:17:22.613580Z, duration: 6, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (23.1) Collecting pip Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/29/a2/d40fb2460e883eca5199c62cfc2463fd261f760556ae6290f88488c362c0/pip-25.1.1-py3-none-any.whl (1.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 11.8 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (67.6.1) Collecting setuptools Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a3/dc/17031897dae0efacfea57dfd3a82fdd2a2aeb58e0ff71b77b87e44edc772/setuptools-80.9.0-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 14.1 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Attempting uninstall: pip Found existing installation: pip 23.1 Uninstalling pip-23.1: Successfully uninstalled pip-23.1 Successfully installed pip-25.1.1 setuptools-80.9.0 [rtd-command-info] start-time: 2025-06-07T06:17:22.659260Z, end-time: 2025-06-07T06:17:31.521365Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir sphinx Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting sphinx Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/31/53/136e9eca6e0b9dc0e1962e2c908fbea2e5ac000c2a2fbd9a35797958c48b/sphinx-8.2.3-py3-none-any.whl (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 13.7 MB/s eta 0:00:00 Collecting sphinxcontrib-applehelp>=1.0.7 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5d/85/9ebeae2f76e9e77b952f4b274c27238156eae7979c5421fba91a28f4970d/sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB) Collecting sphinxcontrib-devhelp>=1.0.6 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/35/7a/987e583882f985fe4d7323774889ec58049171828b58c2217e7f79cdf44e/sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB) Collecting sphinxcontrib-htmlhelp>=2.0.6 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0a/7b/18a8c0bcec9182c05a0b3ec2a776bba4ead82750a55ff798e8d406dae604/sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB) Collecting sphinxcontrib-jsmath>=1.0.1 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c2/42/4c8646762ee83602e3fb3fbe774c2fac12f317deb0b5dbeeedd2d3ba4b77/sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-qthelp>=1.0.6 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/27/83/859ecdd180cacc13b1f7e857abf8582a64552ea7a061057a6c716e790fce/sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB) Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/52/a7/d2782e4e3f77c8450f727ba74a8f12756d5ba823d81b941f1b04da9d033a/sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB) Collecting Jinja2>=3.1 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/62/a1/3d680cbfd5f4b8f15abc1d571870c5fc3e594bb582bc3b64ea099db13e56/jinja2-3.1.6-py3-none-any.whl (134 kB) Collecting Pygments>=2.17 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8a/0b/9fcc47d19c48b59121088dd6da2488a49d5f72dacf8262e2790a1d2c7d15/pygments-2.19.1-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 14.5 MB/s eta 0:00:00 Collecting docutils<0.22,>=0.20 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8f/d7/9322c609343d929e75e7e5e6255e614fcc67572cfd083959cdef3b7aad79/docutils-0.21.2-py3-none-any.whl (587 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 587.4/587.4 kB 16.8 MB/s eta 0:00:00 Collecting snowballstemmer>=2.2 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c8/78/3565d011c61f5a43488987ee32b6f3f656e7f107ac2782dd57bdd7d91d9a/snowballstemmer-3.0.1-py3-none-any.whl (103 kB) Collecting babel>=2.13 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b7/b8/3fe70c75fe32afc4bb507f75563d39bc5642255d1d94f1f23604725780bf/babel-2.17.0-py3-none-any.whl (10.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.2/10.2 MB 13.9 MB/s eta 0:00:00 Collecting alabaster>=0.7.14 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7e/b3/6b4067be973ae96ba0d615946e314c5ae35f9f993eca561b356540bb0c2b/alabaster-1.0.0-py3-none-any.whl (13 kB) Collecting imagesize>=1.3 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ff/62/85c4c919272577931d407be5ba5d71c20f0b616d31a0befe0ae45bb79abd/imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting requests>=2.30.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f9/9b/335f9764261e915ed497fcdeb11df5dfd6f7bf257d4a6a2a686d80da4d54/requests-2.32.3-py3-none-any.whl (64 kB) Collecting roman-numerals-py>=1.0.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/53/97/d2cbbaa10c9b826af0e10fdf836e1bf344d9f0abb873ebc34d1f49642d3f/roman_numerals_py-3.1.0-py3-none-any.whl (7.7 kB) Collecting packaging>=23.0 (from sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl (66 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=3.1->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f3/f0/89e7aadfb3749d0f52234a0c8c7867877876e0a20b60e2188e9850794c17/MarkupSafe-3.0.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.30.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8c/73/6ede2ec59bce19b3edf4209d70004253ec5f4e319f9a2e3f2f15601ed5f7/charset_normalizer-3.4.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (148 kB) Collecting idna<4,>=2.5 (from requests>=2.30.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/76/c6/c88e154df9c4e1a2a66ccf0005a88dfb2650c1dffb6f5ce603dfbd452ce3/idna-3.10-py3-none-any.whl (70 kB) Collecting urllib3<3,>=1.21.1 (from requests>=2.30.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/6b/11/cc635220681e93a0183390e26485430ca2c7b5f9d33b15c74c2861cb8091/urllib3-2.4.0-py3-none-any.whl (128 kB) Collecting certifi>=2017.4.17 (from requests>=2.30.0->sphinx) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4a/7e/3db2bd1b1f9e95f7cddca6d6e75e2f2bd9f51b1246e546d88addca0106bd/certifi-2025.4.26-py3-none-any.whl (159 kB) Installing collected packages: urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, snowballstemmer, roman-numerals-py, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.2 Pygments-2.19.1 alabaster-1.0.0 babel-2.17.0 certifi-2025.4.26 charset-normalizer-3.4.2 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-25.0 requests-2.32.3 roman-numerals-py-3.1.0 snowballstemmer-3.0.1 sphinx-8.2.3 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.4.0 [rtd-command-info] start-time: 2025-06-07T06:17:31.573543Z, end-time: 2025-06-07T06:18:19.642111Z, duration: 48, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting pandoc (from -r docs/requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/10/9a/e3186e760c57ee5f1c27ea5cea577a0ff9abfca51eefcb4d9a4cd39aff2e/pandoc-2.4.tar.gz (34 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pypandoc (from -r docs/requirements.txt (line 2)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/61/06/0763e0ccc81754d3eadb21b2cb86cf21bdedc9b52698c2ad6785db7f0a4e/pypandoc-1.15-py3-none-any.whl (21 kB) Requirement already satisfied: sphinx>=7.3.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from -r docs/requirements.txt (line 3)) (8.2.3) Collecting sphinx-autodoc-typehints (from -r docs/requirements.txt (line 4)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f7/c7/8aab362e86cbf887e58be749a78d20ad743e1eb2c73c2b13d4761f39a104/sphinx_autodoc_typehints-3.2.0-py3-none-any.whl (20 kB) Collecting pydata-sphinx-theme (from -r docs/requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e2/0d/8ba33fa83a7dcde13eb3c1c2a0c1cc29950a048bfed6d9b0d8b6bd710b4c/pydata_sphinx_theme-0.16.1-py3-none-any.whl (6.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.7/6.7 MB 13.1 MB/s eta 0:00:00 Collecting sphinx-design (from -r docs/requirements.txt (line 6)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c6/43/65c0acbd8cc6f50195a3a1fc195c404988b15c67090e73c7a41a9f57d6bd/sphinx_design-0.6.1-py3-none-any.whl (2.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 13.8 MB/s eta 0:00:00 Collecting readthedocs-sphinx-search (from -r docs/requirements.txt (line 7)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/04/3c/41bc9d7d4d936a73e380423f23996bee1691e17598d8a03c062be6aac640/readthedocs_sphinx_search-0.3.2-py3-none-any.whl (21 kB) Collecting sphinxcontrib-napoleon (from -r docs/requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/75/f2/6b7627dfe7b4e418e295e254bb15c3a6455f11f8c0ad0d43113f678049c3/sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Collecting ipykernel (from -r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/94/5c/368ae6c01c7628438358e6d337c19b05425727fbb221d2a3c4303c372f42/ipykernel-6.29.5-py3-none-any.whl (117 kB) Collecting ipywidgets (from -r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/58/6a/9166369a2f092bd286d24e6307de555d63616e8ddb373ebad2b5635ca4cd/ipywidgets-8.1.7-py3-none-any.whl (139 kB) Collecting nbconvert>=7.10.0 (from -r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cc/9a/cd673b2f773a12c992f41309ef81b99da1690426bd2f96957a7ade0d3ed7/nbconvert-7.16.6-py3-none-any.whl (258 kB) Collecting nbsphinx>=0.9.5 (from -r docs/requirements.txt (line 12)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/49/2d/8c8e635bcc6757573d311bb3c5445426382f280da32b8cd6d82d501ef4a4/nbsphinx-0.9.7-py3-none-any.whl (31 kB) Collecting plantweb (from -r docs/requirements.txt (line 13)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/3d/d2d36e503d131d99980db36844679ba6a9edda08b493d86ace8560c02c39/plantweb-1.3.0-py3-none-any.whl (20 kB) Collecting sciris (from -r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/65/83/2fb0bcc3386c0ead53b425ef3ed8768c064d34aaed644ca927fc199c19f8/sciris-3.2.1-py3-none-any.whl (247 kB) Collecting matplotlib (from -r docs/requirements.txt (line 15)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c4/91/ba0ae1ff4b3f30972ad01cd4a8029e70a0ec3b8ea5be04764b128b66f763/matplotlib-3.10.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.6/8.6 MB 13.8 MB/s eta 0:00:00 Collecting scipy (from -r docs/requirements.txt (line 16)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/0b/1f/03f52c282437a168ee2c7c14a1a0d0781a9a4a8962d84ac05c06b4c5b555/scipy-1.15.3-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (37.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.7 MB/s eta 0:00:00 Collecting plumbum (from pandoc->-r docs/requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4f/9d/d03542c93bb3d448406731b80f39c3d5601282f778328c22c77d270f4ed4/plumbum-1.9.0-py3-none-any.whl (127 kB) Collecting ply (from pandoc->-r docs/requirements.txt (line 1)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a3/58/35da89ee790598a0700ea49b2a66594140f44dec458c07e8e3d4979137fc/ply-3.11-py2.py3-none-any.whl (49 kB) Requirement already satisfied: sphinxcontrib-applehelp>=1.0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: sphinxcontrib-devhelp>=1.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.1.0) Requirement already satisfied: sphinxcontrib-jsmath>=1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (1.0.1) Requirement already satisfied: sphinxcontrib-qthelp>=1.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: Jinja2>=3.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.1.6) Requirement already satisfied: Pygments>=2.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.19.1) Requirement already satisfied: docutils<0.22,>=0.20 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (0.21.2) Requirement already satisfied: snowballstemmer>=2.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.0.1) Requirement already satisfied: babel>=2.13 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.17.0) Requirement already satisfied: alabaster>=0.7.14 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (1.0.0) Requirement already satisfied: imagesize>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (1.4.1) Requirement already satisfied: requests>=2.30.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.32.3) Requirement already satisfied: roman-numerals-py>=1.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.1.0) Requirement already satisfied: packaging>=23.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (25.0) Collecting beautifulsoup4 (from pydata-sphinx-theme->-r docs/requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/50/cd/30110dc0ffcf3b131156077b90e9f60ed75711223f306da4db08eff8403b/beautifulsoup4-4.13.4-py3-none-any.whl (187 kB) Collecting accessible-pygments (from pydata-sphinx-theme->-r docs/requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8d/3f/95338030883d8c8b91223b4e21744b04d11b161a3ef117295d8241f50ab4/accessible_pygments-0.0.5-py3-none-any.whl (1.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 14.5 MB/s eta 0:00:00 Collecting typing-extensions (from pydata-sphinx-theme->-r docs/requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/69/e0/552843e0d356fbb5256d21449fa957fa4eff3bbc135a74a691ee70c7c5da/typing_extensions-4.14.0-py3-none-any.whl (43 kB) Collecting six>=1.5.2 (from sphinxcontrib-napoleon->-r docs/requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b7/ce/149a00dd41f10bc29e5921b496af8b574d8413afcd5e30dfa0ed46c2cc5e/six-1.17.0-py2.py3-none-any.whl (11 kB) Collecting pockets>=0.3 (from sphinxcontrib-napoleon->-r docs/requirements.txt (line 8)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e9/2f/a4583c70fbd8cd04910e2884bcc2bdd670e884061f7b4d70bc13e632a993/pockets-0.9.1-py2.py3-none-any.whl (26 kB) Collecting comm>=0.1.1 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e6/75/49e5bfe642f71f272236b5b2d2691cf915a7283cc0ceda56357b61daa538/comm-0.2.2-py3-none-any.whl (7.2 kB) Collecting debugpy>=1.6.5 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/10/53/0a0cb5d79dd9f7039169f8bf94a144ad3efa52cc519940b3b7dde23bcb89/debugpy-1.8.14-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.2/4.2 MB 13.5 MB/s eta 0:00:00 Collecting ipython>=7.23.1 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3c/99/9ed3d52d00f1846679e3aa12e2326ac7044b5e7f90dc822b60115fa533ca/ipython-9.3.0-py3-none-any.whl (605 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 605.3/605.3 kB 17.5 MB/s eta 0:00:00 Collecting jupyter-client>=6.1.12 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/11/85/b0394e0b6fcccd2c1eeefc230978a6f8cb0c5df1e4cd3e7625735a0d7d1e/jupyter_client-8.6.3-py3-none-any.whl (106 kB) Collecting jupyter-core!=5.0.*,>=4.12 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/2f/57/6bffd4b20b88da3800c5d691e0337761576ee688eb01299eae865689d2df/jupyter_core-5.8.1-py3-none-any.whl (28 kB) Collecting matplotlib-inline>=0.1 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8f/8e/9ad090d3553c280a8060fbf6e24dc1c0c29704ee7d1c372f0c174aa59285/matplotlib_inline-0.1.7-py3-none-any.whl (9.9 kB) Collecting nest-asyncio (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a0/c4/c2971a3ba4c6103a3d10c4b0f24f461ddc027f0f09763220cf35ca1401b3/nest_asyncio-1.6.0-py3-none-any.whl (5.2 kB) Collecting psutil (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bf/b9/b0eb3f3cbcb734d930fdf839431606844a825b23eaf9a6ab371edac8162c/psutil-7.0.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (277 kB) Collecting pyzmq>=24 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/81/b1/57db58cfc8af592ce94f40649bd1804369c05b2190e4cbc0a2dad572baeb/pyzmq-26.4.0-cp312-cp312-manylinux_2_28_x86_64.whl (855 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 855.9/855.9 kB 15.4 MB/s eta 0:00:00 Collecting tornado>=6.1 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7d/f7/0c48ba992d875521ac761e6e04b0a1750f8150ae42ea26df1852d6a98942/tornado-6.5.1-cp39-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (443 kB) Collecting traitlets>=5.4.0 (from ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/00/c0/8f5d070730d7836adc9c9b6408dec68c6ced86b304a9b26a14df072a6e8c/traitlets-5.14.3-py3-none-any.whl (85 kB) Collecting widgetsnbextension~=4.0.14 (from ipywidgets->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ca/51/5447876806d1088a0f8f71e16542bf350918128d0a69437df26047c8e46f/widgetsnbextension-4.0.14-py3-none-any.whl (2.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 14.3 MB/s eta 0:00:00 Collecting jupyterlab_widgets~=3.0.15 (from ipywidgets->-r docs/requirements.txt (line 10)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/43/6a/ca128561b22b60bd5a0c4ea26649e68c8556b82bc70a0c396eebc977fe86/jupyterlab_widgets-3.0.15-py3-none-any.whl (216 kB) Collecting bleach!=5.0.0 (from bleach[css]!=5.0.0->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fc/55/96142937f66150805c25c4d0f31ee4132fd33497753400734f9dfdcbdc66/bleach-6.2.0-py3-none-any.whl (163 kB) Collecting defusedxml (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/07/6c/aa3f2f849e01cb6a001cd8554a88d4c77c5c1a31c95bdf1cf9301e6d9ef4/defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Collecting jupyterlab-pygments (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/dd/ead9d8ea85bf202d90cc513b533f9c363121c7792674f78e0d8a854b63b4/jupyterlab_pygments-0.3.0-py3-none-any.whl (15 kB) Requirement already satisfied: markupsafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) (3.0.2) Collecting mistune<4,>=2.0.3 (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/01/4d/23c4e4f09da849e127e9f123241946c23c1e30f45a88366879e064211815/mistune-3.1.3-py3-none-any.whl (53 kB) Collecting nbclient>=0.5.0 (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/34/6d/e7fa07f03a4a7b221d94b4d586edb754a9b0dc3c9e2c93353e9fa4e0d117/nbclient-0.10.2-py3-none-any.whl (25 kB) Collecting nbformat>=5.7 (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a9/82/0340caa499416c78e5d8f5f05947ae4bc3cba53c9f038ab6e9ed964e22f1/nbformat-5.10.4-py3-none-any.whl (78 kB) Collecting pandocfilters>=1.4.1 (from nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ef/af/4fbc8cab944db5d21b7e2a5b8e9211a03a79852b1157e2c102fcc61ac440/pandocfilters-1.5.1-py2.py3-none-any.whl (8.7 kB) INFO: pip is looking at multiple versions of nbsphinx to determine which version is compatible with other requirements. This could take a while. Collecting nbsphinx>=0.9.5 (from -r docs/requirements.txt (line 12)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/6a/8a/5dc4c8794053572a89f5c44437ef4e870f88903a6b6734500af1286f9018/nbsphinx-0.9.6-py3-none-any.whl (31 kB) Collecting numpy (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8c/3d/1e1db36cfd41f895d266b103df00ca5b3cbe965184df824dec5c08c6b803/numpy-2.2.6-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.5/16.5 MB 13.7 MB/s eta 0:00:00 Collecting pandas (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/01/a5/931fc3ad333d9d87b10107d948d757d67ebcfc33b1988d5faccc39c6845c/pandas-2.3.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.0/12.0 MB 13.7 MB/s eta 0:00:00 Collecting openpyxl (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/da/977ded879c29cbd04de313843e76868e6e13408a94ed6b987245dc7c8506/openpyxl-3.1.5-py2.py3-none-any.whl (250 kB) Collecting xlsxwriter (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/37/b1/a252d499f2760b314fcf264d2b36fcc4343a1ecdb25492b210cb0db70a68/XlsxWriter-3.2.3-py3-none-any.whl (169 kB) Collecting dill (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/50/3d/9373ad9c56321fdab5b41197068e1d8c25883b3fea29dd361f9b55116869/dill-0.4.0-py3-none-any.whl (119 kB) Collecting zstandard (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fc/79/edeb217c57fe1bf16d890aa91a1c2c96b28c07b46afed54a5dcf310c3f6f/zstandard-0.23.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.4/5.4 MB 13.9 MB/s eta 0:00:00 Collecting multiprocess (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bf/b6/5f922792be93b82ec6b5f270bbb1ef031fd0622847070bbcf9da816502cc/multiprocess-0.70.18-py312-none-any.whl (150 kB) Collecting jsonpickle (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c1/73/04df8a6fa66d43a9fd45c30f283cc4afff17da671886e451d52af60bdc7e/jsonpickle-4.1.1-py3-none-any.whl (47 kB) Collecting pyyaml (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b9/2b/614b4752f2e127db5cc206abc23a8c19678e92b23c3db30fc86ab731d3bd/PyYAML-6.0.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (767 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 767.5/767.5 kB 17.2 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris->-r docs/requirements.txt (line 14)) (80.9.0) Collecting gitpython (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/1d/9a/4114a9057db2f1462d5c8f8390ab7383925fe1ac012eaa42402ad65c2963/GitPython-3.1.44-py3-none-any.whl (207 kB) Collecting jellyfish (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/25/df/bdeb876920dc26405e90a6abf014eff5a1892652a7875733ed0e91a0e424/jellyfish-1.2.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (355 kB) Collecting tqdm (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d0/30/dc54f88dd4a2b5dc8a0279bdd7270e735851848b762aeb1c1184ed1f6b14/tqdm-4.67.1-py3-none-any.whl (78 kB) Collecting python-dateutil (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ec/57/56b9bcc3c9c6a792fcbaf139543cee77261f3651ca9da0c93f5c1221264b/python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Collecting memory_profiler (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/49/26/aaca612a0634ceede20682e692a6c55e35a94c21ba36b807cc40fe910ae1/memory_profiler-0.61.0-py3-none-any.whl (31 kB) Collecting line_profiler (from sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/28/5a/2aa1c21bf5568f019343a6e8505cba35c70edd9acb0ed863b0b8f928dd15/line_profiler-4.2.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (720 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 720.1/720.1 kB 15.7 MB/s eta 0:00:00 Collecting contourpy>=1.0.1 (from matplotlib->-r docs/requirements.txt (line 15)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a8/32/b8a1c8965e4f72482ff2d1ac2cd670ce0b542f203c8e1d34e7c3e6925da7/contourpy-1.3.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (323 kB) Collecting cycler>=0.10 (from matplotlib->-r docs/requirements.txt (line 15)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e7/05/c19819d5e3d95294a6f5947fb9b9629efb316b96de511b418c53d245aae6/cycler-0.12.1-py3-none-any.whl (8.3 kB) Collecting fonttools>=4.22.0 (from matplotlib->-r docs/requirements.txt (line 15)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/94/33/57c81abad641d6ec9c8b06c99cd28d687cb4849efb6168625b5c6b8f9fa4/fonttools-4.58.2-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.9/4.9 MB 13.7 MB/s eta 0:00:00 Collecting kiwisolver>=1.3.1 (from matplotlib->-r docs/requirements.txt (line 15)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bc/b3/9458adb9472e61a998c8c4d95cfdfec91c73c53a375b30b1428310f923e4/kiwisolver-1.4.8-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 14.0 MB/s eta 0:00:00 Collecting pillow>=8 (from matplotlib->-r docs/requirements.txt (line 15)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fe/7c/d8b1330458e4d2f3f45d9508796d7caf0c0d3764c00c823d10f6f1a3b76d/pillow-11.2.1-cp312-cp312-manylinux_2_28_x86_64.whl (4.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 13.8 MB/s eta 0:00:00 Collecting pyparsing>=2.3.1 (from matplotlib->-r docs/requirements.txt (line 15)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/05/e7/df2285f3d08fee213f2d041540fa4fc9ca6c2d44cf36d3a035bf2a8d2bcc/pyparsing-3.2.3-py3-none-any.whl (111 kB) Collecting webencodings (from bleach!=5.0.0->bleach[css]!=5.0.0->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f4/24/2a3e3df732393fed8b3ebf2ec078f05546de641fe1b667ee316ec1dcf3b7/webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting tinycss2<1.5,>=1.1.0 (from bleach[css]!=5.0.0->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e6/34/ebdc18bae6aa14fbee1a08b63c015c72b64868ff7dae68808ab500c492e2/tinycss2-1.4.0-py3-none-any.whl (26 kB) Collecting decorator (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/4e/8c/f3147f5c4b73e7550fe5f9352eaa956ae838d5c51eb58e7a25b9f3e2643b/decorator-5.2.1-py3-none-any.whl (9.2 kB) Collecting ipython-pygments-lexers (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/d9/33/1f075bf72b0b747cb3288d011319aaf64083cf2efef8354174e3ed4540e2/ipython_pygments_lexers-1.1.1-py3-none-any.whl (8.1 kB) Collecting jedi>=0.16 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c0/5a/9cac0c82afec3d09ccd97c8b6502d48f165f9124db81b4bcb90b4af974ee/jedi-0.19.2-py2.py3-none-any.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 13.7 MB/s eta 0:00:00 Collecting pexpect>4.3 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9e/c3/059298687310d527a58bb01f3b1965787ee3b40dce76752eda8b44e9a2c5/pexpect-4.9.0-py2.py3-none-any.whl (63 kB) Collecting prompt_toolkit<3.1.0,>=3.0.41 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ce/4f/5249960887b1fbe561d9ff265496d170b55a735b76724f10ef19f9e40716/prompt_toolkit-3.0.51-py3-none-any.whl (387 kB) Collecting stack_data (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f1/7b/ce1eafaf1a76852e2ec9b22edecf1daa58175c090266e9f6c64afcd81d91/stack_data-0.6.3-py3-none-any.whl (24 kB) Collecting wcwidth (from prompt_toolkit<3.1.0,>=3.0.41->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fd/84/fd2ba7aafacbad3c4201d395674fc6348826569da3c0937e75505ead3528/wcwidth-0.2.13-py2.py3-none-any.whl (34 kB) Collecting parso<0.9.0,>=0.8.4 (from jedi>=0.16->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c6/ac/dac4a63f978e4dcb3c6d3a78c4d8e0192a113d288502a1216950c41b1027/parso-0.8.4-py2.py3-none-any.whl (103 kB) Collecting platformdirs>=2.5 (from jupyter-core!=5.0.*,>=4.12->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fe/39/979e8e21520d4e47a0bbe349e2713c0aac6f3d853d0e5b34d76206c439aa/platformdirs-4.3.8-py3-none-any.whl (18 kB) Collecting fastjsonschema>=2.15 (from nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/90/2b/0817a2b257fe88725c25589d89aec060581aabf668707a8d03b2e9e0cb2a/fastjsonschema-2.21.1-py3-none-any.whl (23 kB) Collecting jsonschema>=2.6 (from nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a2/3d/023389198f69c722d039351050738d6755376c8fd343e91dc493ea485905/jsonschema-4.24.0-py3-none-any.whl (88 kB) Collecting attrs>=22.2.0 (from jsonschema>=2.6->nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/77/06/bb80f5f86020c4551da315d78b3ab75e8228f89f0162f2c3a819e407941a/attrs-25.3.0-py3-none-any.whl (63 kB) Collecting jsonschema-specifications>=2023.03.6 (from jsonschema>=2.6->nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/01/0e/b27cdbaccf30b890c40ed1da9fd4a3593a5cf94dae54fb34f8a4b74fcd3f/jsonschema_specifications-2025.4.1-py3-none-any.whl (18 kB) Collecting referencing>=0.28.4 (from jsonschema>=2.6->nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c1/b1/3baf80dc6d2b7bc27a95a67752d0208e410351e3feb4eb78de5f77454d8d/referencing-0.36.2-py3-none-any.whl (26 kB) Collecting rpds-py>=0.7.1 (from jsonschema>=2.6->nbformat>=5.7->nbconvert>=7.10.0->-r docs/requirements.txt (line 11)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7a/95/dd6b91cd4560da41df9d7030a038298a67d24f8ca38e150562644c829c48/rpds_py-0.25.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (390 kB) Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/22/a6/858897256d0deac81a172289110f31629fc4cee19b6f01283303e18c8db3/ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.10) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.4.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2025.4.26) Collecting soupsieve>1.2 (from beautifulsoup4->pydata-sphinx-theme->-r docs/requirements.txt (line 5)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/e7/9c/0e6afc12c269578be5c0c1c9f4b49a8d32770a080260c333ac04cc1c832d/soupsieve-2.7-py3-none-any.whl (36 kB) Collecting gitdb<5,>=4.0.1 (from gitpython->sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/a0/61/5c78b91c3143ed5c14207f463aecfc8f9dbb5092fb2869baf37c273b2705/gitdb-4.0.12-py3-none-any.whl (62 kB) Collecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->gitpython->sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/04/be/d09147ad1ec7934636ad912901c5fd7667e1c858e19d355237db0d0cd5e4/smmap-5.0.2-py3-none-any.whl (24 kB) Collecting et-xmlfile (from openpyxl->sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/c1/8b/5fe2cc11fee489817272089c4203e679c63b570a5aaeb18d852ae3cbba6a/et_xmlfile-2.0.0-py3-none-any.whl (18 kB) Collecting pytz>=2020.1 (from pandas->sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/81/c4/34e93fe5f5429d7570ec1fa436f1986fb1f00c3e0f43a589fe2bbcd22c3f/pytz-2025.2-py2.py3-none-any.whl (509 kB) Collecting tzdata>=2022.7 (from pandas->sciris->-r docs/requirements.txt (line 14)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/5c/23/c7abc0ca0a1526a0774eca151daeb8de62ec457e77262b66b359c3c7679e/tzdata-2025.2-py2.py3-none-any.whl (347 kB) Collecting executing>=1.2.0 (from stack_data->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7b/8f/c4d9bafc34ad7ad5d8dc16dd1347ee0e507a52c3adb6bfa8887e1c6a26ba/executing-2.2.0-py2.py3-none-any.whl (26 kB) Collecting asttokens>=2.1.0 (from stack_data->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/25/8a/c46dcc25341b5bce5472c718902eb3d38600a903b14fa6aeecef3f21a46f/asttokens-3.0.0-py3-none-any.whl (26 kB) Collecting pure-eval (from stack_data->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 9)) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/8e/37/efad0257dc6e593a18957422533ff0f87ede7c9c6ea010a2177d738fb82f/pure_eval-0.2.3-py3-none-any.whl (11 kB) Building wheels for collected packages: pandoc DEPRECATION: Building 'pandoc' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'pandoc'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for pandoc (setup.py): started Building wheel for pandoc (setup.py): finished with status 'done' Created wheel for pandoc: filename=pandoc-2.4-py3-none-any.whl size=34871 sha256=d724cf704c8b1680ace396df229e5ea7d7e54556d151441ce1fc8bb48f9c3f00 Stored in directory: /tmp/pip-ephem-wheel-cache-ziqqjscu/wheels/48/c9/1f/4e719eb39abdab7e13324bc447609284c7bb8a5ce5836dc838 Successfully built pandoc Installing collected packages: webencodings, wcwidth, pytz, pure-eval, ptyprocess, ply, fastjsonschema, zstandard, xlsxwriter, widgetsnbextension, tzdata, typing-extensions, traitlets, tqdm, tornado, tinycss2, soupsieve, smmap, six, rpds-py, readthedocs-sphinx-search, pyzmq, pyyaml, pyparsing, pypandoc, psutil, prompt_toolkit, plumbum, platformdirs, pillow, pexpect, parso, pandocfilters, numpy, nest-asyncio, mistune, line_profiler, kiwisolver, jupyterlab_widgets, jupyterlab-pygments, jsonpickle, jellyfish, ipython-pygments-lexers, fonttools, executing, et-xmlfile, dill, defusedxml, decorator, debugpy, cycler, bleach, attrs, asttokens, accessible-pygments, stack_data, scipy, referencing, python-dateutil, pockets, plantweb, pandoc, openpyxl, multiprocess, memory_profiler, matplotlib-inline, jupyter-core, jedi, gitdb, contourpy, comm, beautifulsoup4, sphinxcontrib-napoleon, sphinx-design, sphinx-autodoc-typehints, pydata-sphinx-theme, pandas, matplotlib, jupyter-client, jsonschema-specifications, ipython, gitpython, sciris, jsonschema, ipywidgets, ipykernel, nbformat, nbclient, nbconvert, nbsphinx Successfully installed accessible-pygments-0.0.5 asttokens-3.0.0 attrs-25.3.0 beautifulsoup4-4.13.4 bleach-6.2.0 comm-0.2.2 contourpy-1.3.2 cycler-0.12.1 debugpy-1.8.14 decorator-5.2.1 defusedxml-0.7.1 dill-0.4.0 et-xmlfile-2.0.0 executing-2.2.0 fastjsonschema-2.21.1 fonttools-4.58.2 gitdb-4.0.12 gitpython-3.1.44 ipykernel-6.29.5 ipython-9.3.0 ipython-pygments-lexers-1.1.1 ipywidgets-8.1.7 jedi-0.19.2 jellyfish-1.2.0 jsonpickle-4.1.1 jsonschema-4.24.0 jsonschema-specifications-2025.4.1 jupyter-client-8.6.3 jupyter-core-5.8.1 jupyterlab-pygments-0.3.0 jupyterlab_widgets-3.0.15 kiwisolver-1.4.8 line_profiler-4.2.0 matplotlib-3.10.3 matplotlib-inline-0.1.7 memory_profiler-0.61.0 mistune-3.1.3 multiprocess-0.70.18 nbclient-0.10.2 nbconvert-7.16.6 nbformat-5.10.4 nbsphinx-0.9.6 nest-asyncio-1.6.0 numpy-2.2.6 openpyxl-3.1.5 pandas-2.3.0 pandoc-2.4 pandocfilters-1.5.1 parso-0.8.4 pexpect-4.9.0 pillow-11.2.1 plantweb-1.3.0 platformdirs-4.3.8 plumbum-1.9.0 ply-3.11 pockets-0.9.1 prompt_toolkit-3.0.51 psutil-7.0.0 ptyprocess-0.7.0 pure-eval-0.2.3 pydata-sphinx-theme-0.16.1 pypandoc-1.15 pyparsing-3.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 pyyaml-6.0.2 pyzmq-26.4.0 readthedocs-sphinx-search-0.3.2 referencing-0.36.2 rpds-py-0.25.1 scipy-1.15.3 sciris-3.2.1 six-1.17.0 smmap-5.0.2 soupsieve-2.7 sphinx-autodoc-typehints-3.2.0 sphinx-design-0.6.1 sphinxcontrib-napoleon-0.7 stack_data-0.6.3 tinycss2-1.4.0 tornado-6.5.1 tqdm-4.67.1 traitlets-5.14.3 typing-extensions-4.14.0 tzdata-2025.2 wcwidth-0.2.13 webencodings-0.5.1 widgetsnbextension-4.0.14 xlsxwriter-3.2.3 zstandard-0.23.0 [rtd-command-info] start-time: 2025-06-07T06:18:19.692092Z, end-time: 2025-06-07T06:18:51.392834Z, duration: 31, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir . Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Processing /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting laser-core==0.5.1 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/db/12/9623ec41cdc36cff84e64911a9cd775bc24909aa7fd83e56c9d244df4056/laser_core-0.5.1-cp312-cp312-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (40 kB) Collecting diskcache>=5.6.3 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3f/27/4570e78fc0bf5ea0ca45eb1de3818a23787af9b390c0b0a0033a1b8236f9/diskcache-5.6.3-py3-none-any.whl (45 kB) Collecting appdirs>=1.4.4 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3b/00/2344469e2084fb287c2e0b57b72910309874c3245463acd6cf5e3db69324/appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Collecting pydantic>=2.11.5 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b5/69/831ed22b38ff9b4b64b66569f0e5b7b97cf3638346eb95a2147fdb49ad5f/pydantic-2.11.5-py3-none-any.whl (444 kB) Collecting pycountry>=24.6.1 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b1/ec/1fb891d8a2660716aadb2143235481d15ed1cbfe3ad669194690b0604492/pycountry-24.6.1-py3-none-any.whl (6.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.3/6.3 MB 16.3 MB/s eta 0:00:00 Requirement already satisfied: requests>=2.32.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from laser-measles==0.6.0) (2.32.3) Collecting alive-progress>=3.2.0 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/57/39/cade3a5a97fffa3ae84f298208237b3a9f7112d6b0ed57e8ff4b755e44b4/alive_progress-3.2.0-py3-none-any.whl (77 kB) Requirement already satisfied: sciris>=3.2.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from laser-measles==0.6.0) (3.2.1) Collecting polars>=1.30.0 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/76/20/e018cd87d7cb6f8684355f31f4e193222455a6e8f7b942f4a2934f5969c7/polars-1.30.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (36.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 36.3/36.3 MB 16.3 MB/s eta 0:00:00 Collecting pyarrow>=20.0.0 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bb/1b/2168d6050e52ff1e6cefc61d600723870bf569cbf41d13db939c8cf97a16/pyarrow-20.0.0-cp312-cp312-manylinux_2_28_x86_64.whl (42.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.3/42.3 MB 16.1 MB/s eta 0:00:00 Collecting click (from laser-core==0.5.1->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/85/32/10bb5764d90a8eee674e9dc6f4db6a0ab47c8c4d0d83c27f7c39ac415a4d/click-8.2.1-py3-none-any.whl (102 kB) Requirement already satisfied: numpy in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from laser-core==0.5.1->laser-measles==0.6.0) (2.2.6) Collecting numba (from laser-core==0.5.1->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9a/2d/e518df036feab381c23a624dac47f8445ac55686ec7f11083655eb707da3/numba-0.61.2-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.9/3.9 MB 15.9 MB/s eta 0:00:00 Requirement already satisfied: matplotlib in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from laser-core==0.5.1->laser-measles==0.6.0) (3.10.3) Requirement already satisfied: pandas in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from laser-core==0.5.1->laser-measles==0.6.0) (2.3.0) Collecting h5py (from laser-core==0.5.1->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/86/f9/f00de11c82c88bfc1ef22633557bfba9e271e0cb3189ad704183fc4a2644/h5py-3.14.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.9/4.9 MB 14.1 MB/s eta 0:00:00 Collecting about-time==4.2.1 (from alive-progress>=3.2.0->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fb/cd/7ee00d6aa023b1d0551da0da5fee3bc23c3eeea632fbfc5126d1fec52b7e/about_time-4.2.1-py3-none-any.whl (13 kB) Collecting grapheme==0.6.0 (from alive-progress>=3.2.0->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ce/e7/bbaab0d2a33e07c8278910c1d0d8d4f3781293dfbc70b5c38197159046bf/grapheme-0.6.0.tar.gz (207 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting annotated-types>=0.6.0 (from pydantic>=2.11.5->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/78/b6/6307fbef88d9b5ee7421e68d78a9f162e0da4900bc5f5793f6d3d0e34fb8/annotated_types-0.7.0-py3-none-any.whl (13 kB) Collecting pydantic-core==2.33.2 (from pydantic>=2.11.5->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f9/41/4b043778cf9c4285d59742281a769eac371b9e47e35f98ad321349cc5d61/pydantic_core-2.33.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 16.3 MB/s eta 0:00:00 Requirement already satisfied: typing-extensions>=4.12.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from pydantic>=2.11.5->laser-measles==0.6.0) (4.14.0) Collecting typing-inspection>=0.4.0 (from pydantic>=2.11.5->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/17/69/cd203477f944c353c31bade965f880aa1061fd6bf05ded0726ca845b6ff7/typing_inspection-0.4.1-py3-none-any.whl (14 kB) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from requests>=2.32.3->laser-measles==0.6.0) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from requests>=2.32.3->laser-measles==0.6.0) (3.10) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from requests>=2.32.3->laser-measles==0.6.0) (2.4.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from requests>=2.32.3->laser-measles==0.6.0) (2025.4.26) Requirement already satisfied: openpyxl in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (3.1.5) Requirement already satisfied: xlsxwriter in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (3.2.3) Requirement already satisfied: psutil in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (7.0.0) Requirement already satisfied: dill in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (0.4.0) Requirement already satisfied: zstandard in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (0.23.0) Requirement already satisfied: multiprocess in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (0.70.18) Requirement already satisfied: jsonpickle in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (4.1.1) Requirement already satisfied: pyyaml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (6.0.2) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (25.0) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (80.9.0) Requirement already satisfied: gitpython in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (3.1.44) Requirement already satisfied: jellyfish in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (1.2.0) Requirement already satisfied: tqdm in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (4.67.1) Requirement already satisfied: python-dateutil in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (2.9.0.post0) Requirement already satisfied: memory_profiler in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (0.61.0) Requirement already satisfied: line_profiler in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (4.2.0) Requirement already satisfied: gitdb<5,>=4.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from gitpython->sciris>=3.2.1->laser-measles==0.6.0) (4.0.12) Requirement already satisfied: smmap<6,>=3.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from gitdb<5,>=4.0.1->gitpython->sciris>=3.2.1->laser-measles==0.6.0) (5.0.2) Requirement already satisfied: contourpy>=1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core==0.5.1->laser-measles==0.6.0) (1.3.2) Requirement already satisfied: cycler>=0.10 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core==0.5.1->laser-measles==0.6.0) (0.12.1) Requirement already satisfied: fonttools>=4.22.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core==0.5.1->laser-measles==0.6.0) (4.58.2) Requirement already satisfied: kiwisolver>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core==0.5.1->laser-measles==0.6.0) (1.4.8) Requirement already satisfied: pillow>=8 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core==0.5.1->laser-measles==0.6.0) (11.2.1) Requirement already satisfied: pyparsing>=2.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core==0.5.1->laser-measles==0.6.0) (3.2.3) Requirement already satisfied: six>=1.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from python-dateutil->sciris>=3.2.1->laser-measles==0.6.0) (1.17.0) Collecting llvmlite<0.45,>=0.44.0dev0 (from numba->laser-core==0.5.1->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cb/da/8341fd3056419441286c8e26bf436923021005ece0bff5f41906476ae514/llvmlite-0.44.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (42.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.4/42.4 MB 16.1 MB/s eta 0:00:00 Requirement already satisfied: et-xmlfile in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from openpyxl->sciris>=3.2.1->laser-measles==0.6.0) (2.0.0) Requirement already satisfied: pytz>=2020.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from pandas->laser-core==0.5.1->laser-measles==0.6.0) (2025.2) Requirement already satisfied: tzdata>=2022.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from pandas->laser-core==0.5.1->laser-measles==0.6.0) (2025.2) Building wheels for collected packages: laser-measles, grapheme Building wheel for laser-measles (pyproject.toml): started Building wheel for laser-measles (pyproject.toml): finished with status 'done' Created wheel for laser-measles: filename=laser_measles-0.6.0-cp312-cp312-linux_x86_64.whl size=4466052 sha256=2b396f109d0115358b5a8cf21ab13e1f6db0e334573b9f0cebc15f893b75e37f Stored in directory: /tmp/pip-ephem-wheel-cache-v1elo1g2/wheels/62/3a/36/ef67797e01da7b9b6a2f5625cf489f3ab1d1bec0d42e59cb70 DEPRECATION: Building 'grapheme' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'grapheme'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for grapheme (setup.py): started Building wheel for grapheme (setup.py): finished with status 'done' Created wheel for grapheme: filename=grapheme-0.6.0-py3-none-any.whl size=210136 sha256=84a16274afb748a2958ceba9e761c45de3e0ffd6eb4d9868d515353320673cbb Stored in directory: /tmp/pip-ephem-wheel-cache-v1elo1g2/wheels/79/3e/d7/a2aee5a2aaef471aaf680602ef8734c9eca78ab158ad47a4c7 Successfully built laser-measles grapheme Installing collected packages: grapheme, appdirs, typing-inspection, pydantic-core, pycountry, pyarrow, polars, llvmlite, h5py, diskcache, click, annotated-types, about-time, pydantic, numba, alive-progress, laser-core, laser-measles Successfully installed about-time-4.2.1 alive-progress-3.2.0 annotated-types-0.7.0 appdirs-1.4.4 click-8.2.1 diskcache-5.6.3 grapheme-0.6.0 h5py-3.14.0 laser-core-0.5.1 laser-measles-0.6.0 llvmlite-0.44.0 numba-0.61.2 polars-1.30.0 pyarrow-20.0.0 pycountry-24.6.1 pydantic-2.11.5 pydantic-core-2.33.2 typing-inspection-0.4.1 [rtd-command-info] start-time: 2025-06-07T06:18:51.532739Z, end-time: 2025-06-07T06:18:51.568054Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. import os import sys import sciris as sc on_rtd = os.environ.get('READTHEDOCS') == 'True' # -- Project information ----------------------------------------------------- project = 'laser-measles' copyright = f'2024 - {sc.now().year}, Bill & Melinda Gates Foundation. All rights reserved.' # The short X.Y version version = "0.6.0" # The full version, including alpha/beta/rc tags release = version # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here extensions = [ "sphinx.ext.autodoc", # Core Sphinx library for auto html doc generation from docstrings "sphinx.ext.autosummary", # Create neat summary tables for modules/classes/methods etc -- causes warnings with Napoleon however "sphinx.ext.intersphinx", "sphinx.ext.viewcode", # Add a link to the Python source code for classes, functions etc. "sphinx.ext.napoleon", "sphinx.ext.autosectionlabel", "sphinx.ext.doctest", # Enable doctest builder "sphinx_autodoc_typehints", # Automatically document param types (less noise in class signature) "sphinx_design", # Add e.g. grid layout 'sphinx_search.extension', # search across multiple docsets in domain "nbsphinx", ] # Use Google docstrings napoleon_google_docstring = True # Configure autosummary autosummary_generate = True # Turn on sphinx.ext.autosummary autosummary_ignore_module_all = False # Respect __all__ autodoc_member_order = 'bysource' # Keep original ordering add_module_names = False # NB, does not work autodoc_inherit_docstrings = False # Stops sublcasses from including docs from parent classes # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # Syntax highlighting style pygments_style = "sphinx" modindex_common_prefix = ["laser_measles."] # List of patterns, relative to source directory, to exclude exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"] # Suppress certain warnings suppress_warnings = ['autosectionlabel.*'] # -- Options for HTML output ------------------------------------------------- html_theme = "pydata_sphinx_theme" html_theme_options = { "collapse_navigation": False, "navigation_depth": 3, "show_prev_next": True, "icon_links": [ {"name": "Web", "url": "https://starsim.org", "icon": "fas fa-home"}, { "name": "GitHub", "url": "https://github.com/InstituteforDiseaseModeling/laser-measles", "icon": "fab fa-github-square", }, ], "navbar_end": ["theme-switcher", "navbar-icon-links"], "secondary_sidebar_items": ["navbar-side"], "header_links_before_dropdown": 5, "footer_start": ["copyright", "footer_start"], "footer_end": ["theme-version", "footer_end"], } html_sidebars = { "**": ["sidebar-nav-bs", "page-toc"], } html_logo = "images/idm-logo-transparent.png" html_favicon = "images/favicon.ico" html_static_path = ['_static'] html_baseurl = "https://docs.idmod.org/" html_context = { 'rtd_url': 'https://docs.idmod.org/', "versions_dropdown": { "latest": "devel (latest)", "stable": "current (stable)", }, "default_mode": "light", } # Add any extra paths that contain custom files if not on_rtd: html_extra_path = ['robots.txt'] # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. html_last_updated_fmt = '%Y-%b-%d' html_show_sourcelink = True html_show_sphinx = False html_copy_source = False htmlhelp_basename = 'laser-measles' # Add customizations def setup(app): app.add_css_file("theme_overrides.css") # Modify this to not rerun the Jupyter notebook cells -- usually set by build_docs nbsphinx_execute = 'always' nbsphinx_timeout = 300 # OpenSearch options html_use_opensearch = 'docs.idmod.org/projects/laser-measles/en/latest' # -- RTD Sphinx search for searching across the entire domain, default child ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } [rtd-command-info] start-time: 2025-06-07T06:18:51.605290Z, end-time: 2025-06-07T06:19:56.768391Z, duration: 65, exit-code: 0 python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v8.2.3 Matplotlib is building the font cache; this may take a moment. loading translations [en]... done making output directory... done [autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst WARNING: Failed to import laser_measles.generic. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.generic.metapop. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.generic.model. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.generic.params. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.demographics. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'demographics' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.demographics.admin_shapefile. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'demographics' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.demographics.base. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'demographics' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.demographics.cache. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'demographics' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.demographics.gadm. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'demographics' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.demographics.raster_patch. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'demographics' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.demographics.shapefiles. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'demographics' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.biweekly.components. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.components.routine_immunization. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.components.vital_dynamics. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.nigeria. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.lgas. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.metapop. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.model. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.params. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.biweekly. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.mixing. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.model. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.params. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/nbsphinx-code-cells.css building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 15 source files that are out of date updating environment: [new config] 15 added, 0 changed, 0 removed reading sources... [ 7%] api/index reading sources... [ 13%] authors reading sources... [ 20%] changelog reading sources... [ 27%] contributing reading sources... [ 33%] index reading sources... [ 40%] installation reading sources... [ 47%] readme reading sources... [ 53%] reference/laser_measles reading sources... [ 60%] reference/laser_measles.biweekly reading sources... [ 67%] reference/laser_measles.biweekly.components reading sources... [ 73%] reference/laser_measles.demographics reading sources... [ 80%] reference/laser_measles.generic reading sources... [ 87%] reference/laser_measles.nigeria reading sources... [ 93%] reference/modules reading sources... [100%] usage /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/__init__.py:docstring of laser_measles.Births.initializers:1: WARNING: duplicate object description of laser_measles.Births.initializers, other instance in reference/laser_measles, use :no-index: for one of them /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/__init__.py:docstring of laser_measles.Births.metrics:1: WARNING: duplicate object description of laser_measles.Births.metrics, other instance in reference/laser_measles, use :no-index: for one of them /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/births.py:docstring of laser_measles.births.Births.initializers:1: WARNING: duplicate object description of laser_measles.births.Births.initializers, other instance in reference/laser_measles, use :no-index: for one of them /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/births.py:docstring of laser_measles.births.Births.metrics:1: WARNING: duplicate object description of laser_measles.births.Births.metrics, other instance in reference/laser_measles, use :no-index: for one of them WARNING: autodoc: failed to import module 'biweekly' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.mixing' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.routine_immunization' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.vital_dynamics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.admin_shapefile' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.base' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.cache' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.gadm' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.raster_patch' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.shapefiles' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.metapop' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.lgas' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.metapop' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/documentation_options.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 7%] api/index writing output... [ 13%] authors writing output... [ 20%] changelog writing output... [ 27%] contributing writing output... [ 33%] index writing output... [ 40%] installation writing output... [ 47%] readme writing output... [ 53%] reference/laser_measles writing output... [ 60%] reference/laser_measles.biweekly writing output... [ 67%] reference/laser_measles.biweekly.components writing output... [ 73%] reference/laser_measles.demographics writing output... [ 80%] reference/laser_measles.generic writing output... [ 87%] reference/laser_measles.nigeria writing output... [ 93%] reference/modules writing output... [100%] usage generating indices... genindex py-modindex done copying linked files... copying notebooks ... highlighting module code... [ 7%] laser_measles._core highlighting module code... [ 14%] laser_measles.antibodies highlighting module code... [ 21%] laser_measles.births highlighting module code... [ 29%] laser_measles.biweekly.base highlighting module code... [ 36%] laser_measles.biweekly.components.fadeout_tracker highlighting module code... [ 43%] laser_measles.biweekly.components.infection highlighting module code... [ 50%] laser_measles.incubation highlighting module code... [ 57%] laser_measles.infection highlighting module code... [ 64%] laser_measles.model highlighting module code... [ 71%] laser_measles.mortality highlighting module code... [ 79%] laser_measles.routine highlighting module code... [ 86%] laser_measles.susceptibility highlighting module code... [ 93%] laser_measles.transmission highlighting module code... [100%] laser_measles.utils writing additional pages... search opensearch done dumping search index in English (code: en)... done dumping object inventory... done Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/js/rtd_search_config.js build succeeded, 51 warnings. The HTML pages are in ../_readthedocs/html. [rtd-command-info] start-time: 2025-06-07T06:19:56.861441Z, end-time: 2025-06-07T06:20:07.094271Z, duration: 10, exit-code: 0 python -m sphinx -T -b singlehtml -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v8.2.3 loading translations [en]... done making output directory... done loading pickled environment... The configuration has changed (6 options: 'html_permalinks_icon', 'html_static_path', 'html_theme_options', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path', ...) done [autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst WARNING: Failed to import laser_measles.generic. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.generic.metapop. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.generic.model. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.generic.params. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.nigeria. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.lgas. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'nigeria' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.nigeria.metapop. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'nigeria' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.nigeria.model. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'nigeria' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.nigeria.params. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'nigeria' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.biweekly. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.mixing. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.model. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.params. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.components. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.components.routine_immunization. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.components.vital_dynamics. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.demographics. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.admin_shapefile. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.base. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.cache. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.gadm. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.raster_patch. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.shapefiles. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/nbsphinx-code-cells.css building [mo]: targets for 0 po files that are out of date writing output... building [singlehtml]: all documents updating environment: 0 added, 5 changed, 0 removed reading sources... [ 20%] reference/laser_measles.biweekly reading sources... [ 40%] reference/laser_measles.biweekly.components reading sources... [ 60%] reference/laser_measles.demographics reading sources... [ 80%] reference/laser_measles.generic reading sources... [100%] reference/laser_measles.nigeria WARNING: autodoc: failed to import module 'biweekly' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.mixing' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.routine_immunization' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.vital_dynamics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.admin_shapefile' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.base' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.cache' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.gadm' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.raster_patch' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.shapefiles' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.metapop' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.lgas' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.metapop' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/documentation_options.js copying static files: done copying extra files... copying extra files: done copying assets: done assembling single document... index readme installation usage contributing authors changelog reference/modules reference/laser_measles reference/laser_measles.biweekly reference/laser_measles.biweekly.components reference/laser_measles.demographics reference/laser_measles.generic reference/laser_measles.nigeria assembling single document: done writing... done writing additional files... opensearchdone copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/documentation_options.js copying static files: done copying extra files... copying extra files: done dumping object inventory... done Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/js/rtd_search_config.js build succeeded, 47 warnings. The HTML page is in ../_readthedocs/htmlzip. [rtd-command-info] start-time: 2025-06-07T06:20:07.627327Z, end-time: 2025-06-07T06:20:19.870219Z, duration: 12, exit-code: 0 python -m sphinx -T -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf Running Sphinx v8.2.3 loading translations [en]... done making output directory... done loading pickled environment... The configuration has changed (6 options: 'html_permalinks_icon', 'html_static_path', 'html_theme_options', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path', ...) done [autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst WARNING: Failed to import laser_measles.demographics. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.admin_shapefile. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.base. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.cache. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.gadm. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.raster_patch. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.shapefiles. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.biweekly.components. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.routine_immunization. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.vital_dynamics. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.mixing. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.model. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.params. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.nigeria. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.lgas. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.metapop. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.model. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.params. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.generic. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'generic' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.generic.metapop. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'generic' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.generic.model. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'generic' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.generic.params. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'generic' * ModuleNotFoundError: No module named 'shapefile' building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: 0 added, 5 changed, 0 removed reading sources... [ 20%] reference/laser_measles.biweekly reading sources... [ 40%] reference/laser_measles.biweekly.components reading sources... [ 60%] reference/laser_measles.demographics reading sources... [ 80%] reference/laser_measles.generic reading sources... [100%] reference/laser_measles.nigeria WARNING: autodoc: failed to import module 'biweekly' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.mixing' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.routine_immunization' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.vital_dynamics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.admin_shapefile' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.base' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.cache' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.gadm' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.raster_patch' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.shapefiles' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.metapop' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.lgas' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.metapop' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying TeX support files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/latexmkrc Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/Makefile Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/make.bat Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/latexmkjarc done copying assets: done processing laser-measles.tex... index readme installation usage contributing authors changelog reference/modules reference/laser_measles reference/laser_measles.biweekly reference/laser_measles.biweekly.components reference/laser_measles.demographics reference/laser_measles.generic reference/laser_measles.nigeria resolving references... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:16: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://readthedocs.org/projects/laser-measles/badge/?style=flat) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:20: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://github.com/InstituteforDiseaseModeling/laser-measles/actions/workflows/github-actions.yml/badge.svg) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:24: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://codecov.io/gh/InstituteforDiseaseModeling/laser-measles/branch/main/graphs/badge.svg?branch=main) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:28: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/pypi/v/laser-measles.svg) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:32: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/pypi/wheel/laser-measles.svg) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:36: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/pypi/pyversions/laser-measles.svg) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:40: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/pypi/implementation/laser-measles.svg) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/README.rst:44: WARNING: a suitable image for latex builder not found: ['image/svg+xml'] (https://img.shields.io/github/commits-since/InstituteforDiseaseModeling/laser-measles/v0.6.0.svg) processing laser-measles.tex: done writing... done Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/sphinxmessages.sty Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/pdf/_static/js/rtd_search_config.js build succeeded, 55 warnings. The LaTeX files are in ../_readthedocs/pdf. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2025-06-07T06:20:19.920424Z, end-time: 2025-06-07T06:20:19.957967Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2025-06-07T06:20:20.001159Z, end-time: 2025-06-07T06:20:34.009587Z, duration: 14, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-laser-measles -interaction=nonstopmode Use of uninitialized value in concatenation (.) or string at (eval 10) line 1. Use of uninitialized value in concatenation (.) or string at (eval 10) line 2. Use of uninitialized value in concatenation (.) or string at (eval 10) line 3. Use of uninitialized value in concatenation (.) or string at (eval 10) line 4. Subroutine makeglo redefined at (eval 11) line 7. Use of uninitialized value in concatenation (.) or string at (eval 11) line 1. Use of uninitialized value in concatenation (.) or string at (eval 11) line 2. Use of uninitialized value in concatenation (.) or string at (eval 11) line 3. Use of uninitialized value in concatenation (.) or string at (eval 11) line 4. Rc files read: /etc/LatexMk latexmkrc latexmkrc Latexmk: This is Latexmk, John Collins, 20 November 2021, version: 4.76. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'laser-measles.tex' ------------ Run number 1 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-laser-measles" "laser-measles.tex"' ------------ This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./laser-measles.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty (/usr/share/texlive/texmf-dist/tex/latex/pict2e/pict2e.sty (/usr/share/texlive/texmf-dist/tex/latex/pict2e/pict2e.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pict2e/p2e-pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/ellipse/ellipse.sty)) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (./sphinxpackagefootnote.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (./nbsphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-laser-measles.idx (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./institute-for-disease-modeling-laser-measles.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty) (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5-generic-help er.sty (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5-mapping.def) )) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] Chapter 1. ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) Underfull \hbox (badness 10000) in paragraph at lines 174--176 []|\T1/qhv/m/n/10 Win- [1] [2] Chapter 2. [3] [4] Chapter 3. [5] [6] Chapter 4. [7] [8] Chapter 5. [9] [10] Chapter 6. [11] [12] Chapter 7. [13] [14] [15] [16] [17] [18] [19] LaTeX Warning: Hyper reference `reference/laser_measles.biweekly:laser_measles. biweekly.base.BaseComponent' on page 20 undefined on input line 1663. LaTeX Warning: Hyper reference `reference/laser_measles.biweekly:laser_measles. biweekly.base.BaseComponent' on page 20 undefined on input line 1696. [20] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] Chapter 8. [37] [38] LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.antibodi es' on page 39 undefined on input line 4054. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.births' on page 39 undefined on input line 4057. LaTeX Warning: Reference `reference/laser_measles.biweekly:module-laser_measles .biweekly.base' on page 39 undefined on input line 4058. LaTeX Warning: Reference `reference/laser_measles.biweekly.components:module-la ser_measles.biweekly.components.fadeout_tracker' on page 39 undefined on input line 4059. Overfull \hbox (29.87175pt too wide) in paragraph at lines 4059--4060 []\T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker\T1/qtm/m/n/ 10 , LaTeX Warning: Reference `reference/laser_measles.biweekly.components:module-la ser_measles.biweekly.components.infection' on page 39 undefined on input line 4 060. Underfull \hbox (badness 10000) in paragraph at lines 4060--4061 []\T1/txtt/m/n/10 laser_measles.biweekly.components.infection\T1/qtm/m/n/10 , LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.cli' on page 39 undefined on input line 4063. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.core' on page 39 undefined on input line 4064. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.incubati on' on page 39 undefined on input line 4067. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.infectio n' on page 39 undefined on input line 4068. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles' on page 39 undefined on input line 4071. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.model' o n page 39 undefined on input line 4074. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.mortalit y' on page 39 undefined on input line 4075. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.routine' on page 39 undefined on input line 4078. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.suscepti bility' on page 39 undefined on input line 4081. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.transmis sion' on page 39 undefined on input line 4084. LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.utils' o n page 39 undefined on input line 4087. [39] No file institute-for-disease-modeling-laser-measles.ind. (./institute-for-disease-modeling-laser-measles.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `institute-for-disease-modeling-laser-meas les.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ts1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xtt.pfb> Output written on institute-for-disease-modeling-laser-measles.pdf (43 pages, 2 40631 bytes). Transcript written on institute-for-disease-modeling-laser-measles.log. Latexmk: Index file 'institute-for-disease-modeling-laser-measles.idx' was written Latexmk: Missing input file 'institute-for-disease-modeling-laser-measles.ind' (or dependence on it) from following: 'No file institute-for-disease-modeling-laser-measles.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Latexmk: List of undefined refs and citations: Reference `reference/laser_measles.biweekly.components:module-laser_measles.biweekly.components.fadeout_tracker' on page 39 undefined on input line 4059 Reference `reference/laser_measles.biweekly.components:module-laser_measles.biweekly.components.infection' on page 39 undefined on input line 4060 Reference `reference/laser_measles.biweekly:module-laser_measles.biweekly.base' on page 39 undefined on input line 4058 Reference `reference/laser_measles:module-laser_measles' on page 39 undefined on input line 4071 Reference `reference/laser_measles:module-laser_measles.antibodies' on page 39 undefined on input line 4054 Reference `reference/laser_measles:module-laser_measles.births' on page 39 undefined on input line 4057 Reference `reference/laser_measles:module-laser_measles.cli' on page 39 undefined on input line 4063 Reference `reference/laser_measles:module-laser_measles.core' on page 39 undefined on input line 4064 Reference `reference/laser_measles:module-laser_measles.incubation' on page 39 undefined on input line 4067 Reference `reference/laser_measles:module-laser_measles.infection' on page 39 undefined on input line 4068 Reference `reference/laser_measles:module-laser_measles.model' on page 39 undefined on input line 4074 Reference `reference/laser_measles:module-laser_measles.mortality' on page 39 undefined on input line 4075 Reference `reference/laser_measles:module-laser_measles.routine' on page 39 undefined on input line 4078 Reference `reference/laser_measles:module-laser_measles.susceptibility' on page 39 undefined on input line 4081 Reference `reference/laser_measles:module-laser_measles.transmission' on page 39 undefined on input line 4084 Reference `reference/laser_measles:module-laser_measles.utils' on page 39 undefined on input line 4087 Rule 'makeindex institute-for-disease-modeling-laser-measles.idx': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-laser-measles.idx' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-laser-measles.idx' ------------ ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-laser-measles.ind" "institute-for-disease-modeling-laser-measles.idx"' ------------ Latexmk: Examining 'institute-for-disease-modeling-laser-measles.log' === TeX engine is 'pdfTeX' Latexmk: applying rule 'makeindex institute-for-disease-modeling-laser-measles.idx'... This is makeindex, version 2.15 [TeX Live 2022/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-laser-measles.idx....done (152 entries accepted, 0 rejected). Sorting entries....done (1202 comparisons). Generating output file institute-for-disease-modeling-laser-measles.ind....done (200 lines written, 0 warnings). Output written in institute-for-disease-modeling-laser-measles.ind. Transcript written in institute-for-disease-modeling-laser-measles.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-laser-measles.aux' 'institute-for-disease-modeling-laser-measles.ind' 'institute-for-disease-modeling-laser-measles.out' ------------ Run number 2 of rule 'pdflatex' ------------ Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-laser-measles" "laser-measles.tex"' ------------ This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./laser-measles.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty (/usr/share/texlive/texmf-dist/tex/latex/pict2e/pict2e.sty (/usr/share/texlive/texmf-dist/tex/latex/pict2e/pict2e.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pict2e/p2e-pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/ellipse/ellipse.sty)) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (./sphinxpackagefootnote.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (./nbsphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-laser-measles.idx (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./institute-for-disease-modeling-laser-measles.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty) (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5-generic-help er.sty (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5-mapping.def) )) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./institute-for-disease-modeling-laser-measles.out) (./institute-for-disease-modeling-laser-measles.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-laser-measles.toc) [1] [2] Chapter 1. ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) Underfull \hbox (badness 10000) in paragraph at lines 174--176 []|\T1/qhv/m/n/10 Win- [1] [2] Chapter 2. [3] [4] Chapter 3. [5] [6] Chapter 4. [7] [8] Chapter 5. [9] [10] Chapter 6. [11] [12] Chapter 7. [13] [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] Chapter 8. [37] [38] Overfull \hbox (29.87175pt too wide) in paragraph at lines 4059--4060 []\T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker\T1/qtm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 4060--4061 []\T1/txtt/m/n/10 laser_measles.biweekly.components.infection\T1/qtm/m/n/10 , [39] (./institute-for-disease-modeling-laser-measles.ind [40] Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/txtt/m/n/10 BaseScenarioSchema \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/txtt/m/n/10 cast_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 25--27 \T1/qtm/m/it/10 laser_measles.biweekly.components.infection\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/txtt/m/n/10 FadeOutTracker \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (25.91248pt too wide) in paragraph at lines 33--35 \T1/qtm/m/it/10 laser_measles.biweekly.components.fadeout_tracker\T1/qtm/m/n/10 ), Overfull \hbox (40.39233pt too wide) in paragraph at lines 42--44 []\T1/txtt/m/n/10 Infection \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in laser_meas les.biweekly.components.infection\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 58--59 []\T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker Underfull \hbox (badness 10000) in paragraph at lines 88--89 []\T1/txtt/m/n/10 MaternalAntibodies \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in [41] Overfull \hbox (49.87175pt too wide) in paragraph at lines 104--105 []| \T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker\T1/qtm/m/ n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 105--106 []| \T1/txtt/m/n/10 laser_measles.biweekly.components.infection\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 121--123 []\T1/txtt/m/n/10 nb_initialize_susceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 Sus-cep-ti-bil-ity Underfull \hbox (badness 10000) in paragraph at lines 123--124 []\T1/txtt/m/n/10 nb_set_etimers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 nb_set_susceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 Sus-c ep-ti-bil-ity static Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/txtt/m/n/10 nb_transmission_update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 Tran s-mis-sion static Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/txtt/m/n/10 nb_update_exposure_timers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/txtt/m/n/10 nb_update_exposure_timers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 I n-cu-ba-tion static Underfull \hbox (badness 5878) in paragraph at lines 136--138 []\T1/txtt/m/n/10 nb_update_ma_timers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 Ma-ter- nalAn-ti-bod-ies static Underfull \hbox (badness 10000) in paragraph at lines 175--177 []\T1/txtt/m/n/10 seed_infections_in_patch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 177--179 []\T1/txtt/m/n/10 seed_infections_randomly() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [42]) (./institute-for-disease-modeling-laser-measles.aux) Package rerunfilecheck Warning: File `institute-for-disease-modeling-laser-meas les.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ts1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xtt.pfb> Output written on institute-for-disease-modeling-laser-measles.pdf (46 pages, 2 60460 bytes). Transcript written on institute-for-disease-modeling-laser-measles.log. Latexmk: Index file 'institute-for-disease-modeling-laser-measles.idx' was written Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-laser-measles.aux' 'institute-for-disease-modeling-laser-measles.out' 'institute-for-disease-modeling-laser-measles.toc' ------------ Run number 3 of rule 'pdflatex' ------------ Latexmk: Examining 'institute-for-disease-modeling-laser-measles.log' === TeX engine is 'pdfTeX' Latexmk: applying rule 'pdflatex'... ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-laser-measles" "laser-measles.tex"' ------------ This is pdfTeX, Version 3.141592653-2.6-1.40.22 (TeX Live 2022/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./laser-measles.tex LaTeX2e <2021-11-15> patch level 1 L3 programming layer <2022-01-21> (./sphinxmanual.cls Document Class: sphinxmanual 2019/12/01 v2.3.0 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2021/10/04 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf)) (/usr/share/texmf/tex/latex/tex-gyre/tgtermes.sty (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty))) (/usr/share/texmf/tex/latex/tex-gyre/tgheros.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def)) (./sphinxoptionshyperref.sty) (./sphinxoptionsgeometry.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/multicol.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (./sphinxlatexgraphics.sty) (./sphinxpackageboxes.sty (/usr/share/texlive/texmf-dist/tex/latex/pict2e/pict2e.sty (/usr/share/texlive/texmf-dist/tex/latex/pict2e/pict2e.cfg) (/usr/share/texlive/texmf-dist/tex/latex/pict2e/p2e-pdftex.def)) (/usr/share/texlive/texmf-dist/tex/latex/ellipse/ellipse.sty)) (./sphinxlatexadmonitions.sty (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (./sphinxpackagefootnote.sty)) (./sphinxlatexliterals.sty (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty)) (./sphinxlatexshadowbox.sty) (./sphinxlatexcontainers.sty) (./sphinxhighlight.sty) (./sphinxlatextables.sty (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty) (/usr/share/texlive/texmf-dist/tex/latex/booktabs/booktabs.sty)) (./sphinxlatexnumfig.sty) (./sphinxlatexlists.sty) (./sphinxlatexindbibtoc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty)) (./sphinxlatexstylepage.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty)) (./sphinxlatexstyleheadings.sty (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty)) (./sphinxlatexstyletext.sty) (./sphinxlatexobjects.sty)) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/ifvtex.sty (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty))) (./nbsphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref-langpatches.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty))) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) (./sphinxmessages.sty) Writing index file institute-for-disease-modeling-laser-measles.idx (/usr/share/texmf/tex/latex/tex-gyre/t1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./institute-for-disease-modeling-laser-measles.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/epstopdf-pkg/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3packages/l3keys2e/l3keys2e.sty) (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty) (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5-generic-help er.sty (/usr/share/texlive/texmf-dist/tex/latex/fontawesome5/fontawesome5-mapping.def) )) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./institute-for-disease-modeling-laser-measles.out) (./institute-for-disease-modeling-laser-measles.out) (/usr/share/texmf/tex/latex/tex-gyre/t1qhv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./institute-for-disease-modeling-laser-measles.toc) [1] [2] Chapter 1. ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) Underfull \hbox (badness 10000) in paragraph at lines 174--176 []|\T1/qhv/m/n/10 Win- [1] [2] Chapter 2. [3] [4] Chapter 3. [5] [6] Chapter 4. [7] [8] Chapter 5. [9] [10] Chapter 6. [11] [12] Chapter 7. [13] [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [21] [22] [23] [24] [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] Chapter 8. [37] [38] Overfull \hbox (29.87175pt too wide) in paragraph at lines 4059--4060 []\T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker\T1/qtm/m/n/ 10 , Underfull \hbox (badness 10000) in paragraph at lines 4060--4061 []\T1/txtt/m/n/10 laser_measles.biweekly.components.infection\T1/qtm/m/n/10 , [39] (./institute-for-disease-modeling-laser-measles.ind [40] Underfull \hbox (badness 10000) in paragraph at lines 16--18 []\T1/txtt/m/n/10 BaseScenarioSchema \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 25--27 []\T1/txtt/m/n/10 cast_type() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 25--27 \T1/qtm/m/it/10 laser_measles.biweekly.components.infection\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 33--35 []\T1/txtt/m/n/10 FadeOutTracker \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (25.91248pt too wide) in paragraph at lines 33--35 \T1/qtm/m/it/10 laser_measles.biweekly.components.fadeout_tracker\T1/qtm/m/n/10 ), Overfull \hbox (40.39233pt too wide) in paragraph at lines 42--44 []\T1/txtt/m/n/10 Infection \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in laser_meas les.biweekly.components.infection\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 58--59 []\T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker Underfull \hbox (badness 10000) in paragraph at lines 88--89 []\T1/txtt/m/n/10 MaternalAntibodies \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in [41] Overfull \hbox (49.87175pt too wide) in paragraph at lines 104--105 []| \T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker\T1/qtm/m/ n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 105--106 []| \T1/txtt/m/n/10 laser_measles.biweekly.components.infection\T1/qtm/m/n/10 , Underfull \hbox (badness 10000) in paragraph at lines 121--123 []\T1/txtt/m/n/10 nb_initialize_susceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/1 0 Sus-cep-ti-bil-ity Underfull \hbox (badness 10000) in paragraph at lines 123--124 []\T1/txtt/m/n/10 nb_set_etimers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 128--130 []\T1/txtt/m/n/10 nb_set_susceptibility() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 Sus-c ep-ti-bil-ity static Underfull \hbox (badness 10000) in paragraph at lines 130--132 []\T1/txtt/m/n/10 nb_transmission_update() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 Tran s-mis-sion static Underfull \hbox (badness 10000) in paragraph at lines 132--134 []\T1/txtt/m/n/10 nb_update_exposure_timers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 i n mod-ule Underfull \hbox (badness 10000) in paragraph at lines 134--136 []\T1/txtt/m/n/10 nb_update_exposure_timers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 I n-cu-ba-tion static Underfull \hbox (badness 5878) in paragraph at lines 136--138 []\T1/txtt/m/n/10 nb_update_ma_timers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 Ma-ter- nalAn-ti-bod-ies static Underfull \hbox (badness 10000) in paragraph at lines 175--177 []\T1/txtt/m/n/10 seed_infections_in_patch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 177--179 []\T1/txtt/m/n/10 seed_infections_randomly() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [42]) (./institute-for-disease-modeling-laser-measles.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ts1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xtt.pfb> Output written on institute-for-disease-modeling-laser-measles.pdf (46 pages, 2 60480 bytes). Transcript written on institute-for-disease-modeling-laser-measles.log. Latexmk: Index file 'institute-for-disease-modeling-laser-measles.idx' was written Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 1 Refer to 'institute-for-disease-modeling-laser-measles.log' for details Latexmk: Examining 'institute-for-disease-modeling-laser-measles.log' === TeX engine is 'pdfTeX' Latexmk: Errors, in force_mode: so I tried finishing targets [rtd-command-info] start-time: 2025-06-07T06:20:34.220605Z, end-time: 2025-06-07T06:20:45.770473Z, duration: 11, exit-code: 0 python -m sphinx -T -b epub -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/epub Running Sphinx v8.2.3 loading translations [en]... done making output directory... done loading pickled environment... The configuration has changed (4 options: 'html_static_path', 'latex_documents', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path') done [autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst WARNING: Failed to import laser_measles.demographics. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.admin_shapefile. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.base. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.cache. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.gadm. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.raster_patch. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.demographics.shapefiles. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'demographics' WARNING: Failed to import laser_measles.generic. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'generic' * ModuleNotFoundError: No module named 'shapefile' WARNING: Failed to import laser_measles.generic.metapop. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.generic.model. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.generic.params. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'generic' WARNING: Failed to import laser_measles.biweekly.components. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.routine_immunization. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.vital_dynamics. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.mixing. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.model. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.params. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.nigeria. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.lgas. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.metapop. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.model. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' WARNING: Failed to import laser_measles.nigeria.params. Possible hints: * ModuleNotFoundError: No module named 'shapefile' * AttributeError: module 'laser_measles' has no attribute 'nigeria' Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/_static/nbsphinx-code-cells.css building [mo]: targets for 0 po files that are out of date writing output... building [epub]: targets for 15 source files that are out of date updating environment: 0 added, 5 changed, 0 removed reading sources... [ 20%] reference/laser_measles.biweekly reading sources... [ 40%] reference/laser_measles.biweekly.components reading sources... [ 60%] reference/laser_measles.demographics reading sources... [ 80%] reference/laser_measles.generic reading sources... [100%] reference/laser_measles.nigeria WARNING: autodoc: failed to import module 'biweekly' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.mixing' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.routine_immunization' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.vital_dynamics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.admin_shapefile' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.base' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.cache' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.gadm' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.raster_patch' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'demographics.shapefiles' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.metapop' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'generic.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/generic/metapop.py", line 25, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.lgas' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.metapop' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'nigeria.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/__init__.py", line 1, in \n from .metapop import get_scenario\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/nigeria/metapop.py", line 37, in \n from laser_measles.demographics import shapefiles\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/__init__.py", line 1, in \n from . import base\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/demographics/base.py", line 8, in \n from shapefile import Reader\n', "ModuleNotFoundError: No module named 'shapefile'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/_static/documentation_options.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/_static/epub.css copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 7%] api/index writing output... [ 13%] authors writing output... [ 20%] changelog writing output... [ 27%] contributing writing output... [ 33%] index writing output... [ 40%] installation writing output... [ 47%] readme writing output... [ 53%] reference/laser_measles writing output... [ 60%] reference/laser_measles.biweekly writing output... [ 67%] reference/laser_measles.biweekly.components writing output... [ 73%] reference/laser_measles.demographics writing output... [ 80%] reference/laser_measles.generic writing output... [ 87%] reference/laser_measles.nigeria writing output... [ 93%] reference/modules writing output... [100%] usage generating indices... genindex py-modindex done copying linked files... copying notebooks ... writing additional pages... done copying images... [ 12%] https://readthedocs.org/projects/laser-measles/badge/?style=flat copying images... [ 25%] https://github.com/InstituteforDiseaseModeling/laser-measles/actions/workflows/github-actions.yml/badge.svg copying images... [ 38%] https://codecov.io/gh/InstituteforDiseaseModeling/laser-measles/branch/main/graphs/badge.svg?branch=main copying images... [ 50%] https://img.shields.io/pypi/v/laser-measles.svg copying images... [ 62%] https://img.shields.io/pypi/wheel/laser-measles.svg copying images... [ 75%] https://img.shields.io/pypi/pyversions/laser-measles.svg copying images... [ 88%] https://img.shields.io/pypi/implementation/laser-measles.svg copying images... [100%] https://img.shields.io/github/commits-since/InstituteforDiseaseModeling/laser-measles/v0.6.0.svg writing mimetype file... writing META-INF/container.xml file... writing content.opf file... WARNING: unknown mimetype for _static/favicon.ico, ignoring [epub.unknown_project_files] Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/content.opf writing nav.xhtml file... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/nav.xhtml writing toc.ncx file... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/toc.ncx writing laser-measles.epub file... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/_static/js/rtd_search_config.js build succeeded, 48 warnings. The ePub file is in ../_readthedocs/epub.