Read the Docs build information Build id: 3102519 Project: institute-for-disease-modeling-laser-measles Version: latest Commit: b2603b17796f13f19115311f0bd024e6f10c85ec Date: 2025-06-07T01:39:59.723926Z State: finished Success: True [rtd-command-info] start-time: 2025-06-07T01:40:00.756330Z, end-time: 2025-06-07T01:40:01.289513Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/InstituteforDiseaseModeling/laser-measles.git . Cloning into '.'... [rtd-command-info] start-time: 2025-06-07T01:40:01.338215Z, end-time: 2025-06-07T01:40:02.230415Z, duration: 0, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main From https://github.com/InstituteforDiseaseModeling/laser-measles * [new tag] v0.5.0 -> v0.5.0 [rtd-command-info] start-time: 2025-06-07T01:40:02.303113Z, end-time: 2025-06-07T01:40:02.371546Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at b2603b1 Biweekly model (#18) [rtd-command-info] start-time: 2025-06-07T01:40:02.421283Z, end-time: 2025-06-07T01:40:02.456601Z, duration: 0, exit-code: 0 cat .readthedocs.yml # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details version: 2 sphinx: configuration: docs/conf.py formats: all build: os: ubuntu-22.04 tools: python: "3.12" python: install: - requirements: docs/requirements.txt - method: pip path: . # Optionally build your docs in additional formats such as PDF and ePub # formats: # - pdf # - epub [rtd-command-info] start-time: 2025-06-07T01:40:07.168787Z, end-time: 2025-06-07T01:40:07.226635Z, duration: 0, exit-code: 0 asdf global python 3.12.10 [rtd-command-info] start-time: 2025-06-07T01:40:07.576213Z, end-time: 2025-06-07T01:40:08.391136Z, duration: 0, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.12.10.final.0-64 in 564ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2025-06-07T01:40:08.452661Z, end-time: 2025-06-07T01:40:14.665299Z, duration: 6, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Requirement already satisfied: pip in 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alabaster, requests, Jinja2, sphinx Successfully installed Jinja2-3.1.6 MarkupSafe-3.0.2 Pygments-2.19.1 alabaster-1.0.0 babel-2.17.0 certifi-2025.4.26 charset-normalizer-3.4.2 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-25.0 requests-2.32.3 roman-numerals-py-3.1.0 snowballstemmer-3.0.1 sphinx-8.2.3 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.4.0 [rtd-command-info] start-time: 2025-06-07T01:40:22.571950Z, end-time: 2025-06-07T01:41:09.950683Z, duration: 47, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Collecting pandoc (from -r docs/requirements.txt (line 1)) Downloading 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Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for pandoc (setup.py): started Building wheel for pandoc (setup.py): finished with status 'done' Created wheel for pandoc: filename=pandoc-2.4-py3-none-any.whl size=34871 sha256=1e1b5e20f0a501d95377ec6ffcc8ef507ea64f5ab017ba3f28ce048b7d8e2e8a Stored in directory: /tmp/pip-ephem-wheel-cache-r5r5opye/wheels/48/c9/1f/4e719eb39abdab7e13324bc447609284c7bb8a5ce5836dc838 Successfully built pandoc Installing collected packages: webencodings, wcwidth, pytz, pure-eval, ptyprocess, ply, fastjsonschema, zstandard, xlsxwriter, widgetsnbextension, tzdata, typing-extensions, traitlets, tqdm, tornado, tinycss2, soupsieve, smmap, six, rpds-py, readthedocs-sphinx-search, pyzmq, pyyaml, pyparsing, pypandoc, psutil, prompt_toolkit, plumbum, platformdirs, pillow, pexpect, parso, pandocfilters, numpy, nest-asyncio, mistune, line_profiler, kiwisolver, jupyterlab_widgets, jupyterlab-pygments, jsonpickle, jellyfish, ipython-pygments-lexers, fonttools, executing, et-xmlfile, dill, defusedxml, decorator, debugpy, cycler, bleach, attrs, asttokens, accessible-pygments, stack_data, scipy, referencing, python-dateutil, pockets, plantweb, pandoc, openpyxl, multiprocess, memory_profiler, matplotlib-inline, jupyter-core, jedi, gitdb, contourpy, comm, beautifulsoup4, sphinxcontrib-napoleon, sphinx-design, sphinx-autodoc-typehints, pydata-sphinx-theme, pandas, matplotlib, jupyter-client, jsonschema-specifications, ipython, gitpython, sciris, jsonschema, ipywidgets, ipykernel, nbformat, nbclient, nbconvert, nbsphinx Successfully installed accessible-pygments-0.0.5 asttokens-3.0.0 attrs-25.3.0 beautifulsoup4-4.13.4 bleach-6.2.0 comm-0.2.2 contourpy-1.3.2 cycler-0.12.1 debugpy-1.8.14 decorator-5.2.1 defusedxml-0.7.1 dill-0.4.0 et-xmlfile-2.0.0 executing-2.2.0 fastjsonschema-2.21.1 fonttools-4.58.2 gitdb-4.0.12 gitpython-3.1.44 ipykernel-6.29.5 ipython-9.3.0 ipython-pygments-lexers-1.1.1 ipywidgets-8.1.7 jedi-0.19.2 jellyfish-1.2.0 jsonpickle-4.1.1 jsonschema-4.24.0 jsonschema-specifications-2025.4.1 jupyter-client-8.6.3 jupyter-core-5.8.1 jupyterlab-pygments-0.3.0 jupyterlab_widgets-3.0.15 kiwisolver-1.4.8 line_profiler-4.2.0 matplotlib-3.10.3 matplotlib-inline-0.1.7 memory_profiler-0.61.0 mistune-3.1.3 multiprocess-0.70.18 nbclient-0.10.2 nbconvert-7.16.6 nbformat-5.10.4 nbsphinx-0.9.6 nest-asyncio-1.6.0 numpy-2.2.6 openpyxl-3.1.5 pandas-2.3.0 pandoc-2.4 pandocfilters-1.5.1 parso-0.8.4 pexpect-4.9.0 pillow-11.2.1 plantweb-1.3.0 platformdirs-4.3.8 plumbum-1.9.0 ply-3.11 pockets-0.9.1 prompt_toolkit-3.0.51 psutil-7.0.0 ptyprocess-0.7.0 pure-eval-0.2.3 pydata-sphinx-theme-0.16.1 pypandoc-1.15 pyparsing-3.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 pyyaml-6.0.2 pyzmq-26.4.0 readthedocs-sphinx-search-0.3.2 referencing-0.36.2 rpds-py-0.25.1 scipy-1.15.3 sciris-3.2.1 six-1.17.0 smmap-5.0.2 soupsieve-2.7 sphinx-autodoc-typehints-3.2.0 sphinx-design-0.6.1 sphinxcontrib-napoleon-0.7 stack_data-0.6.3 tinycss2-1.4.0 tornado-6.5.1 tqdm-4.67.1 traitlets-5.14.3 typing-extensions-4.14.0 tzdata-2025.2 wcwidth-0.2.13 webencodings-0.5.1 widgetsnbextension-4.0.14 xlsxwriter-3.2.3 zstandard-0.23.0 [rtd-command-info] start-time: 2025-06-07T01:41:09.991350Z, end-time: 2025-06-07T01:41:57.489628Z, duration: 47, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir . Looking in indexes: https://pypi.org/simple, https://packages.idmod.org/api/pypi/pypi-production/simple Processing /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1 (from laser-measles==0.6.0) Cloning https://github.com/InstituteforDiseaseModeling/laser.git (to revision v0.5.1) to /tmp/pip-install-6fb3o93e/laser-core_3e5f86fc7eb6439fa95a09c52a4046be Running command git clone --filter=blob:none --quiet https://github.com/InstituteforDiseaseModeling/laser.git /tmp/pip-install-6fb3o93e/laser-core_3e5f86fc7eb6439fa95a09c52a4046be Resolved https://github.com/InstituteforDiseaseModeling/laser.git to commit 82078a966e33510ba0c5291bffeee522d231b09d Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting rastertoolkit@ git+https://github.com/InstituteforDiseaseModeling/RasterToolkit.git (from laser-measles==0.6.0) Cloning https://github.com/InstituteforDiseaseModeling/RasterToolkit.git to /tmp/pip-install-6fb3o93e/rastertoolkit_cafb71e83744463a930434e3371991e8 Running command git clone --filter=blob:none --quiet https://github.com/InstituteforDiseaseModeling/RasterToolkit.git /tmp/pip-install-6fb3o93e/rastertoolkit_cafb71e83744463a930434e3371991e8 Resolved https://github.com/InstituteforDiseaseModeling/RasterToolkit.git to commit d7fb5bb8d6eb57fa9e990bc3572649b5e7923de8 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting diskcache>=5.6.3 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3f/27/4570e78fc0bf5ea0ca45eb1de3818a23787af9b390c0b0a0033a1b8236f9/diskcache-5.6.3-py3-none-any.whl (45 kB) Collecting appdirs>=1.4.4 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/3b/00/2344469e2084fb287c2e0b57b72910309874c3245463acd6cf5e3db69324/appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Collecting pydantic>=2.11.5 (from laser-measles==0.6.0) Downloading 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satisfied: sciris>=3.2.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from laser-measles==0.6.0) (3.2.1) Collecting polars>=1.30.0 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/76/20/e018cd87d7cb6f8684355f31f4e193222455a6e8f7b942f4a2934f5969c7/polars-1.30.0-cp39-abi3-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (36.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 36.3/36.3 MB 14.0 MB/s eta 0:00:00 Collecting pyarrow>=20.0.0 (from laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/bb/1b/2168d6050e52ff1e6cefc61d600723870bf569cbf41d13db939c8cf97a16/pyarrow-20.0.0-cp312-cp312-manylinux_2_28_x86_64.whl (42.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.3/42.3 MB 14.0 MB/s eta 0:00:00 Collecting click (from laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/85/32/10bb5764d90a8eee674e9dc6f4db6a0ab47c8c4d0d83c27f7c39ac415a4d/click-8.2.1-py3-none-any.whl (102 kB) Requirement already satisfied: numpy in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (2.2.6) Collecting numba (from laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/9a/2d/e518df036feab381c23a624dac47f8445ac55686ec7f11083655eb707da3/numba-0.61.2-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.9/3.9 MB 13.8 MB/s eta 0:00:00 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14.2 MB/s eta 0:00:00 Collecting pyshp~=2.3 (from rastertoolkit@ git+https://github.com/InstituteforDiseaseModeling/RasterToolkit.git->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/98/2f/68116db5b36b895c0450e3072b8cb6c2fac0359279b182ea97014d3c8ac0/pyshp-2.3.1-py2.py3-none-any.whl (46 kB) Collecting pyproj~=3.6 (from rastertoolkit@ git+https://github.com/InstituteforDiseaseModeling/RasterToolkit.git->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/b3/a3/448f05b15e318bd6bea9a32cfaf11e886c4ae61fa3eee6e09ed5c3b74bb2/pyproj-3.7.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.6/9.6 MB 13.9 MB/s eta 0:00:00 Collecting scikit-learn~=1.5 (from rastertoolkit@ git+https://github.com/InstituteforDiseaseModeling/RasterToolkit.git->laser-measles==0.6.0) Downloading 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git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (1.3.2) Requirement already satisfied: cycler>=0.10 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (0.12.1) Requirement already satisfied: fonttools>=4.22.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (4.58.2) Requirement already satisfied: kiwisolver>=1.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (1.4.8) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (25.0) Requirement already satisfied: pillow>=8 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (11.2.1) Requirement already satisfied: pyparsing>=2.3.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from matplotlib->laser-core@ 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git+https://github.com/InstituteforDiseaseModeling/RasterToolkit.git->laser-measles==0.6.0) (1.15.3) Collecting joblib>=1.2.0 (from scikit-learn~=1.5->rastertoolkit@ git+https://github.com/InstituteforDiseaseModeling/RasterToolkit.git->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/7d/4f/1195bbac8e0c2acc5f740661631d8d750dc38d4a32b23ee5df3cde6f4e0d/joblib-1.5.1-py3-none-any.whl (307 kB) Collecting threadpoolctl>=3.1.0 (from scikit-learn~=1.5->rastertoolkit@ git+https://github.com/InstituteforDiseaseModeling/RasterToolkit.git->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/32/d5/f9a850d79b0851d1d4ef6456097579a9005b31fea68726a4ae5f2d82ddd9/threadpoolctl-3.6.0-py3-none-any.whl (18 kB) Collecting about-time==4.2.1 (from alive-progress>=3.2.0->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/fb/cd/7ee00d6aa023b1d0551da0da5fee3bc23c3eeea632fbfc5126d1fec52b7e/about_time-4.2.1-py3-none-any.whl (13 kB) Collecting grapheme==0.6.0 (from alive-progress>=3.2.0->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/ce/e7/bbaab0d2a33e07c8278910c1d0d8d4f3781293dfbc70b5c38197159046bf/grapheme-0.6.0.tar.gz (207 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting annotated-types>=0.6.0 (from pydantic>=2.11.5->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/78/b6/6307fbef88d9b5ee7421e68d78a9f162e0da4900bc5f5793f6d3d0e34fb8/annotated_types-0.7.0-py3-none-any.whl (13 kB) Collecting pydantic-core==2.33.2 (from pydantic>=2.11.5->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/f9/41/4b043778cf9c4285d59742281a769eac371b9e47e35f98ad321349cc5d61/pydantic_core-2.33.2-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.0 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.0/2.0 MB 14.3 MB/s eta 0:00:00 Requirement already satisfied: typing-extensions>=4.12.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from pydantic>=2.11.5->laser-measles==0.6.0) (4.14.0) Collecting typing-inspection>=0.4.0 (from pydantic>=2.11.5->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/17/69/cd203477f944c353c31bade965f880aa1061fd6bf05ded0726ca845b6ff7/typing_inspection-0.4.1-py3-none-any.whl (14 kB) Requirement already satisfied: six>=1.5 in 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requests>=2.32.3->laser-measles==0.6.0) (2.4.0) Requirement already satisfied: openpyxl in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (3.1.5) Requirement already satisfied: xlsxwriter in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (3.2.3) Requirement already satisfied: psutil in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (7.0.0) Requirement already satisfied: dill in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (0.4.0) Requirement already satisfied: zstandard 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/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (80.9.0) Requirement already satisfied: gitpython in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (3.1.44) Requirement already satisfied: jellyfish in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (1.2.0) Requirement already satisfied: tqdm in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (4.67.1) Requirement already satisfied: memory_profiler in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (0.61.0) Requirement already satisfied: line_profiler in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from sciris>=3.2.1->laser-measles==0.6.0) (4.2.0) Requirement already satisfied: gitdb<5,>=4.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from gitpython->sciris>=3.2.1->laser-measles==0.6.0) (4.0.12) Requirement already satisfied: smmap<6,>=3.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from gitdb<5,>=4.0.1->gitpython->sciris>=3.2.1->laser-measles==0.6.0) (5.0.2) Collecting llvmlite<0.45,>=0.44.0dev0 (from numba->laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) Downloading https://packages.idmod.org/api/pypi/pypi-production/packages/packages/cb/da/8341fd3056419441286c8e26bf436923021005ece0bff5f41906476ae514/llvmlite-0.44.0-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (42.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.4/42.4 MB 13.8 MB/s eta 0:00:00 Requirement already satisfied: et-xmlfile in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from openpyxl->sciris>=3.2.1->laser-measles==0.6.0) (2.0.0) Requirement already satisfied: pytz>=2020.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from pandas->laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (2025.2) Requirement already satisfied: tzdata>=2022.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages (from pandas->laser-core@ git+https://github.com/InstituteforDiseaseModeling/laser.git@v0.5.1->laser-measles==0.6.0) (2025.2) Building wheels for collected packages: laser-measles, laser-core, rastertoolkit, grapheme Building wheel for laser-measles (pyproject.toml): started Building wheel for laser-measles (pyproject.toml): finished with status 'done' Created wheel for laser-measles: filename=laser_measles-0.6.0-cp312-cp312-linux_x86_64.whl size=4466084 sha256=19d32d00d687b6c32d3243a94c725cb7f60bb253bc35c61f706bc390d6d62854 Stored in directory: /tmp/pip-ephem-wheel-cache-cdf6fxof/wheels/62/3a/36/ef67797e01da7b9b6a2f5625cf489f3ab1d1bec0d42e59cb70 Building wheel for laser-core (pyproject.toml): started Building wheel for laser-core (pyproject.toml): finished with status 'done' Created wheel for laser-core: filename=laser_core-0.5.1-cp312-cp312-linux_x86_64.whl size=40024 sha256=ea60ff99c5483eb83ef1a6d401bd7e07a4bf7ff02c78b0cc5239e4b6975fb1f6 Stored in directory: /tmp/pip-ephem-wheel-cache-cdf6fxof/wheels/77/1d/47/fcd6fb7b025637edcbb39576bb29d079076d26c8c1e5662f95 Building wheel for rastertoolkit (pyproject.toml): started Building wheel for rastertoolkit (pyproject.toml): finished with status 'done' Created wheel for rastertoolkit: filename=rastertoolkit-0.3.8-py3-none-any.whl size=15322 sha256=351f2829f649225480b25cd0a0ca83da789bebb5bb563e936ccf40820b5aefe4 Stored in directory: /tmp/pip-ephem-wheel-cache-cdf6fxof/wheels/a6/2f/0c/0c094ea1270ee3f98d53e13c38b8044564f7466195b3d99db0 DEPRECATION: Building 'grapheme' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'grapheme'. Discussion can be found at https://github.com/pypa/pip/issues/6334 Building wheel for grapheme (setup.py): started Building wheel for grapheme (setup.py): finished with status 'done' Created wheel for grapheme: filename=grapheme-0.6.0-py3-none-any.whl size=210136 sha256=1c92476b75b1abd286b0b2fb4bcb28d76fe7829d2f541e2cb1ccd4710464fc4e Stored in directory: /tmp/pip-ephem-wheel-cache-cdf6fxof/wheels/79/3e/d7/a2aee5a2aaef471aaf680602ef8734c9eca78ab158ad47a4c7 Successfully built laser-measles laser-core rastertoolkit grapheme Installing collected packages: grapheme, appdirs, typing-inspection, threadpoolctl, shapely, pyshp, pyproj, pydantic-core, pycountry, pyarrow, polars, llvmlite, joblib, h5py, diskcache, click, annotated-types, about-time, scikit-learn, pydantic, numba, alive-progress, rastertoolkit, laser-core, laser-measles Successfully installed about-time-4.2.1 alive-progress-3.2.0 annotated-types-0.7.0 appdirs-1.4.4 click-8.2.1 diskcache-5.6.3 grapheme-0.6.0 h5py-3.14.0 joblib-1.5.1 laser-core-0.5.1 laser-measles-0.6.0 llvmlite-0.44.0 numba-0.61.2 polars-1.30.0 pyarrow-20.0.0 pycountry-24.6.1 pydantic-2.11.5 pydantic-core-2.33.2 pyproj-3.7.1 pyshp-2.3.1 rastertoolkit-0.3.8 scikit-learn-1.7.0 shapely-2.1.1 threadpoolctl-3.6.0 typing-inspection-0.4.1 [rtd-command-info] start-time: 2025-06-07T01:41:57.613015Z, end-time: 2025-06-07T01:41:57.649556Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. import os import sys import sciris as sc on_rtd = os.environ.get('READTHEDOCS') == 'True' # -- Project information ----------------------------------------------------- project = 'laser-measles' copyright = f'2024 - {sc.now().year}, Bill & Melinda Gates Foundation. All rights reserved.' # The short X.Y version version = "0.6.0" # The full version, including alpha/beta/rc tags release = version # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here extensions = [ "sphinx.ext.autodoc", # Core Sphinx library for auto html doc generation from docstrings "sphinx.ext.autosummary", # Create neat summary tables for modules/classes/methods etc -- causes warnings with Napoleon however "sphinx.ext.intersphinx", "sphinx.ext.viewcode", # Add a link to the Python source code for classes, functions etc. "sphinx.ext.napoleon", "sphinx.ext.autosectionlabel", "sphinx.ext.doctest", # Enable doctest builder "sphinx_autodoc_typehints", # Automatically document param types (less noise in class signature) "sphinx_design", # Add e.g. grid layout 'sphinx_search.extension', # search across multiple docsets in domain "nbsphinx", ] # Use Google docstrings napoleon_google_docstring = True # Configure autosummary autosummary_generate = True # Turn on sphinx.ext.autosummary autosummary_ignore_module_all = False # Respect __all__ autodoc_member_order = 'bysource' # Keep original ordering add_module_names = False # NB, does not work autodoc_inherit_docstrings = False # Stops sublcasses from including docs from parent classes # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # Syntax highlighting style pygments_style = "sphinx" modindex_common_prefix = ["laser_measles."] # List of patterns, relative to source directory, to exclude exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"] # Suppress certain warnings suppress_warnings = ['autosectionlabel.*'] # -- Options for HTML output ------------------------------------------------- html_theme = "pydata_sphinx_theme" html_theme_options = { "collapse_navigation": False, "navigation_depth": 3, "show_prev_next": True, "icon_links": [ {"name": "Web", "url": "https://starsim.org", "icon": "fas fa-home"}, { "name": "GitHub", "url": "https://github.com/InstituteforDiseaseModeling/laser-measles", "icon": "fab fa-github-square", }, ], "navbar_end": ["theme-switcher", "navbar-icon-links"], "secondary_sidebar_items": ["navbar-side"], "header_links_before_dropdown": 5, "footer_start": ["copyright", "footer_start"], "footer_end": ["theme-version", "footer_end"], } html_sidebars = { "**": ["sidebar-nav-bs", "page-toc"], } html_logo = "images/idm-logo-transparent.png" html_favicon = "images/favicon.ico" html_static_path = ['_static'] html_baseurl = "https://docs.idmod.org/" html_context = { 'rtd_url': 'https://docs.idmod.org/', "versions_dropdown": { "latest": "devel (latest)", "stable": "current (stable)", }, "default_mode": "light", } # Add any extra paths that contain custom files if not on_rtd: html_extra_path = ['robots.txt'] # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. html_last_updated_fmt = '%Y-%b-%d' html_show_sourcelink = True html_show_sphinx = False html_copy_source = False htmlhelp_basename = 'laser-measles' # Add customizations def setup(app): app.add_css_file("theme_overrides.css") # Modify this to not rerun the Jupyter notebook cells -- usually set by build_docs nbsphinx_execute = 'always' nbsphinx_timeout = 300 # OpenSearch options html_use_opensearch = 'docs.idmod.org/projects/laser-measles/en/latest' # -- RTD Sphinx search for searching across the entire domain, default child ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } [rtd-command-info] start-time: 2025-06-07T01:41:57.693577Z, end-time: 2025-06-07T01:43:03.009908Z, duration: 65, exit-code: 0 python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v8.2.3 Matplotlib is building the font cache; this may take a moment. loading translations [en]... done making output directory... done [autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst WARNING: Failed to import laser_measles.biweekly.components. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.routine_immunization. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.vital_dynamics. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.mixing. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.model. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.params. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/nbsphinx-code-cells.css building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 15 source files that are out of date updating environment: [new config] 15 added, 0 changed, 0 removed reading sources... [ 7%] api/index reading sources... [ 13%] authors reading sources... [ 20%] changelog reading sources... [ 27%] contributing reading sources... [ 33%] index reading sources... [ 40%] installation reading sources... [ 47%] readme reading sources... [ 53%] reference/laser_measles reading sources... [ 60%] reference/laser_measles.biweekly reading sources... [ 67%] reference/laser_measles.biweekly.components reading sources... [ 73%] reference/laser_measles.demographics reading sources... [ 80%] reference/laser_measles.generic reading sources... [ 87%] reference/laser_measles.nigeria reading sources... [ 93%] reference/modules reading sources... [100%] usage /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/__init__.py:docstring of laser_measles.Births.initializers:1: WARNING: duplicate object description of laser_measles.Births.initializers, other instance in reference/laser_measles, use :no-index: for one of them /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/__init__.py:docstring of laser_measles.Births.metrics:1: WARNING: duplicate object description of laser_measles.Births.metrics, other instance in reference/laser_measles, use :no-index: for one of them /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/births.py:docstring of laser_measles.births.Births.initializers:1: WARNING: duplicate object description of laser_measles.births.Births.initializers, other instance in reference/laser_measles, use :no-index: for one of them /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/births.py:docstring of laser_measles.births.Births.metrics:1: WARNING: duplicate object description of laser_measles.births.Births.metrics, other instance in reference/laser_measles, use :no-index: for one of them WARNING: autodoc: failed to import module 'biweekly' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.mixing' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.routine_immunization' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.vital_dynamics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/documentation_options.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 7%] api/index writing output... [ 13%] authors writing output... [ 20%] changelog writing output... [ 27%] contributing writing output... [ 33%] index writing output... [ 40%] installation writing output... [ 47%] readme writing output... [ 53%] reference/laser_measles writing output... [ 60%] reference/laser_measles.biweekly writing output... [ 67%] reference/laser_measles.biweekly.components writing output... [ 73%] reference/laser_measles.demographics writing output... [ 80%] reference/laser_measles.generic writing output... [ 87%] reference/laser_measles.nigeria writing output... [ 93%] reference/modules writing output... [100%] usage generating indices... genindex py-modindex done copying linked files... copying notebooks ... highlighting module code... [ 4%] laser_measles._core highlighting module code... [ 8%] laser_measles.antibodies highlighting module code... [ 12%] laser_measles.births highlighting module code... [ 17%] laser_measles.biweekly.base highlighting module code... [ 21%] laser_measles.biweekly.components.fadeout_tracker highlighting module code... [ 25%] laser_measles.biweekly.components.infection highlighting module code... [ 29%] laser_measles.demographics.admin_shapefile highlighting module code... 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[ 96%] laser_measles.transmission highlighting module code... [100%] laser_measles.utils writing additional pages... search opensearch done dumping search index in English (code: en)... done dumping object inventory... done Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/html/_static/js/rtd_search_config.js build succeeded, 19 warnings. The HTML pages are in ../_readthedocs/html. [rtd-command-info] start-time: 2025-06-07T01:43:03.057234Z, end-time: 2025-06-07T01:43:14.089077Z, duration: 11, exit-code: 0 python -m sphinx -T -b singlehtml -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/htmlzip Running Sphinx v8.2.3 loading translations [en]... done making output directory... done loading pickled environment... The configuration has changed (6 options: 'html_permalinks_icon', 'html_static_path', 'html_theme_options', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path', ...) done [autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst WARNING: Failed to import laser_measles.biweekly.components. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.components.routine_immunization. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.components.vital_dynamics. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.mixing. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.model. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' WARNING: Failed to import laser_measles.biweekly.params. Possible hints: * AttributeError: module 'laser_measles' has no attribute 'biweekly' * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/nbsphinx-code-cells.css building [mo]: targets for 0 po files that are out of date writing output... building [singlehtml]: all documents updating environment: 0 added, 2 changed, 0 removed reading sources... [ 50%] reference/laser_measles.biweekly reading sources... [100%] reference/laser_measles.biweekly.components WARNING: autodoc: failed to import module 'biweekly' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.mixing' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.routine_immunization' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.vital_dynamics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/documentation_options.js copying static files: done copying extra files... copying extra files: done copying assets: done assembling single document... index readme installation usage contributing authors changelog reference/modules reference/laser_measles reference/laser_measles.biweekly reference/laser_measles.biweekly.components reference/laser_measles.demographics reference/laser_measles.generic reference/laser_measles.nigeria assembling single document: done writing... done writing additional files... opensearchdone copying static files... Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/language_data.js Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/basic.css Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/documentation_options.js copying static files: done copying extra files... copying extra files: done dumping object inventory... done Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/htmlzip/_static/js/rtd_search_config.js build succeeded, 15 warnings. The HTML page is in ../_readthedocs/htmlzip. [rtd-command-info] start-time: 2025-06-07T01:43:14.624561Z, end-time: 2025-06-07T01:43:28.115306Z, duration: 13, exit-code: 0 python -m sphinx -T -b latex -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/pdf Running Sphinx v8.2.3 loading translations [en]... done making output directory... done loading pickled environment... The configuration has changed (6 options: 'html_permalinks_icon', 'html_static_path', 'html_theme_options', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path', ...) done [autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst WARNING: Failed to import laser_measles.biweekly.components. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.routine_immunization. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.vital_dynamics. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.mixing. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.model. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.params. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' building [mo]: targets for 0 po files that are out of date writing output... building [latex]: all documents updating environment: 0 added, 2 changed, 0 removed reading sources... [ 50%] reference/laser_measles.biweekly reading sources... [100%] reference/laser_measles.biweekly.components WARNING: autodoc: failed to import module 'biweekly' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] looking for now-outdated files... none found WARNING: autodoc: failed to import module 'biweekly.mixing' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.routine_immunization' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.vital_dynamics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying TeX support files... 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The LaTeX files are in ../_readthedocs/pdf. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). [rtd-command-info] start-time: 2025-06-07T01:43:28.164565Z, end-time: 2025-06-07T01:43:28.207509Z, duration: 0, exit-code: 0 cat latexmkrc $latex = 'latex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $pdflatex = 'pdflatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $lualatex = 'lualatex ' . $ENV{'LATEXOPTS'} . ' %O %S'; $xelatex = 'xelatex --no-pdf ' . $ENV{'LATEXOPTS'} . ' %O %S'; $makeindex = 'makeindex -s python.ist %O -o %D %S'; add_cus_dep( "glo", "gls", 0, "makeglo" ); sub makeglo { return system( "makeindex -s gglo.ist -o '$_[0].gls' '$_[0].glo'" ); } [rtd-command-info] start-time: 2025-06-07T01:43:28.243174Z, end-time: 2025-06-07T01:43:43.318226Z, duration: 15, exit-code: 0 latexmk -r latexmkrc -pdf -f -dvi- -ps- -jobname=institute-for-disease-modeling-laser-measles -interaction=nonstopmode Use of uninitialized value in concatenation (.) or string at (eval 10) line 1. Use of uninitialized value in concatenation (.) or string at (eval 10) line 2. Use of uninitialized value in concatenation (.) or string at (eval 10) line 3. Use of uninitialized value in concatenation (.) or string at (eval 10) line 4. Subroutine makeglo redefined at (eval 11) line 7. Use of uninitialized value in concatenation (.) or string at (eval 11) line 1. Use of uninitialized value in concatenation (.) or string at (eval 11) line 2. 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LaTeX Warning: Reference `reference/laser_measles:module-laser_measles.utils' o n page 49 undefined on input line 5725. [49] No file institute-for-disease-modeling-laser-measles.ind. (./institute-for-disease-modeling-laser-measles.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `institute-for-disease-modeling-laser-meas les.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ts1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xtt.pfb> Output written on institute-for-disease-modeling-laser-measles.pdf (53 pages, 2 64559 bytes). Transcript written on institute-for-disease-modeling-laser-measles.log. Latexmk: Index file 'institute-for-disease-modeling-laser-measles.idx' was written Latexmk: Missing input file 'institute-for-disease-modeling-laser-measles.ind' (or dependence on it) from following: 'No file institute-for-disease-modeling-laser-measles.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Latexmk: List of undefined refs and citations: Reference `reference/laser_measles.biweekly.components:module-laser_measles.biweekly.components.fadeout_tracker' on page 49 undefined on input line 5675 Reference `reference/laser_measles.biweekly.components:module-laser_measles.biweekly.components.infection' on page 49 undefined on input line 5676 Reference `reference/laser_measles.biweekly:module-laser_measles.biweekly.base' on page 49 undefined on input line 5674 Reference `reference/laser_measles.demographics:module-laser_measles.demographics' on page 49 undefined on input line 5683 Reference `reference/laser_measles.demographics:module-laser_measles.demographics.admin_shapefile' on page 49 undefined on input line 5684 Reference `reference/laser_measles.demographics:module-laser_measles.demographics.base' on page 49 undefined on input line 5685 Reference `reference/laser_measles.demographics:module-laser_measles.demographics.cache' on page 49 undefined on input line 5686 Reference `reference/laser_measles.demographics:module-laser_measles.demographics.gadm' on page 49 undefined on input line 5687 Reference `reference/laser_measles.demographics:module-laser_measles.demographics.raster_patch' on page 49 undefined on input line 5688 Reference `reference/laser_measles.demographics:module-laser_measles.demographics.shapefiles' on page 49 undefined on input line 5689 Reference `reference/laser_measles.generic:module-laser_measles.generic' on page 49 undefined on input line 5692 Reference `reference/laser_measles.generic:module-laser_measles.generic.metapop' on page 49 undefined on input line 5693 Reference `reference/laser_measles.generic:module-laser_measles.generic.model' on page 49 undefined on input line 5694 Reference `reference/laser_measles.generic:module-laser_measles.generic.params' on page 49 undefined on input line 5695 Reference `reference/laser_measles.nigeria:module-laser_measles.nigeria' on page 49 undefined on input line 5709 Reference `reference/laser_measles.nigeria:module-laser_measles.nigeria.lgas' on page 49 undefined on input line 5710 Reference `reference/laser_measles.nigeria:module-laser_measles.nigeria.metapop' on page 49 undefined on input line 5711 Reference `reference/laser_measles.nigeria:module-laser_measles.nigeria.model' on page 49 undefined on input line 5712 Reference `reference/laser_measles.nigeria:module-laser_measles.nigeria.params' on page 49 undefined on input line 5713 Reference `reference/laser_measles:module-laser_measles' on page 49 undefined on input line 5702 Reference `reference/laser_measles:module-laser_measles.antibodies' on page 49 undefined on input line 5670 Reference `reference/laser_measles:module-laser_measles.births' on page 49 undefined on input line 5673 Reference `reference/laser_measles:module-laser_measles.cli' on page 49 undefined on input line 5679 Reference `reference/laser_measles:module-laser_measles.core' on page 49 undefined on input line 5680 Reference `reference/laser_measles:module-laser_measles.incubation' on page 49 undefined on input line 5698 Reference `reference/laser_measles:module-laser_measles.infection' on page 49 undefined on input line 5699 Reference `reference/laser_measles:module-laser_measles.model' on page 49 undefined on input line 5705 Reference `reference/laser_measles:module-laser_measles.mortality' on page 49 undefined on input line 5706 Reference `reference/laser_measles:module-laser_measles.routine' on page 49 undefined on input line 5716 Reference `reference/laser_measles:module-laser_measles.susceptibility' on page 49 undefined on input line 5719 Reference `reference/laser_measles:module-laser_measles.transmission' on page 49 undefined on input line 5722 Reference `reference/laser_measles:module-laser_measles.utils' on page 49 undefined on input line 5725 Rule 'makeindex institute-for-disease-modeling-laser-measles.idx': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-laser-measles.idx' ------------ Run number 1 of rule 'makeindex institute-for-disease-modeling-laser-measles.idx' ------------ Latexmk: Examining 'institute-for-disease-modeling-laser-measles.log' === TeX engine is 'pdfTeX' Latexmk: applying rule 'makeindex institute-for-disease-modeling-laser-measles.idx'... ------------ Running 'makeindex -s python.ist -o "institute-for-disease-modeling-laser-measles.ind" "institute-for-disease-modeling-laser-measles.idx"' ------------ This is makeindex, version 2.15 [TeX Live 2022/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file institute-for-disease-modeling-laser-measles.idx....done (245 entries accepted, 0 rejected). Sorting entries.....done (2022 comparisons). Generating output file institute-for-disease-modeling-laser-measles.ind....done (347 lines written, 0 warnings). Output written in institute-for-disease-modeling-laser-measles.ind. Transcript written in institute-for-disease-modeling-laser-measles.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'institute-for-disease-modeling-laser-measles.aux' 'institute-for-disease-modeling-laser-measles.ind' 'institute-for-disease-modeling-laser-measles.out' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -interaction=nonstopmode -recorder --jobname="institute-for-disease-modeling-laser-measles" "laser-measles.tex"' ------------ Latexmk: applying rule 'pdflatex'... 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See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) Underfull \hbox (badness 10000) in paragraph at lines 174--176 []|\T1/qhv/m/n/10 Win- [1] [2] Chapter 2. [3] [4] Chapter 3. [5] [6] Chapter 4. [7] [8] Chapter 5. [9] [10] Chapter 6. [11] [12] Chapter 7. [13] [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [21] Underfull \hbox (badness 10000) in paragraph at lines 1977--1980 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [22] Underfull \hbox (badness 10000) in paragraph at lines 2241--2244 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [23] Underfull \hbox (badness 10000) in paragraph at lines 2477--2480 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [24] Underfull \hbox (badness 10000) in paragraph at lines 2584--2587 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Chapter 8. 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(rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ts1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xtt.pfb> Output written on institute-for-disease-modeling-laser-measles.pdf (58 pages, 2 90991 bytes). Transcript written on institute-for-disease-modeling-laser-measles.log. Latexmk: Index file 'institute-for-disease-modeling-laser-measles.idx' was written Latexmk: References changed. 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See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} ! LaTeX Error: Unknown graphics extension: .svg. See the LaTeX manual or LaTeX Companion for explanation. Type H for immediate help. ... l.121 \end{tabulary} (/usr/share/texmf/tex/latex/tex-gyre/ts1qtm.fd) (/usr/share/texlive/texmf-dist/tex/latex/txfonts/t1txtt.fd) Underfull \hbox (badness 10000) in paragraph at lines 174--176 []|\T1/qhv/m/n/10 Win- [1] [2] Chapter 2. [3] [4] Chapter 3. [5] [6] Chapter 4. [7] [8] Chapter 5. [9] [10] Chapter 6. [11] [12] Chapter 7. [13] [14] [15] [16] [17] [18] [19] [20] Underfull \hbox (badness 10000) in paragraph at lines 1820--1823 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [21] Underfull \hbox (badness 10000) in paragraph at lines 1977--1980 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [22] Underfull \hbox (badness 10000) in paragraph at lines 2241--2244 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [23] Underfull \hbox (badness 10000) in paragraph at lines 2477--2480 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [24] Underfull \hbox (badness 10000) in paragraph at lines 2584--2587 \T1/qtm/m/n/10 Con-fig-u-ra-tion for the model, should be a dic-tio-nary con-fo rm-ing to [\T1/qtm/m/it/10 Con-fig- [25] [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42] [43] [44] [45] [46] Chapter 8. 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too wide) in paragraph at lines 113--115 []\T1/txtt/m/n/10 Infection \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in laser_meas les.biweekly.components.infection\T1/qtm/m/n/10 ), Overfull \hbox (27.37175pt too wide) in paragraph at lines 129--130 []\T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker Underfull \hbox (badness 10000) in paragraph at lines 186--188 []\T1/txtt/m/n/10 load_cache() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule [52] Underfull \hbox (badness 10000) in paragraph at lines 193--194 []\T1/txtt/m/n/10 MaternalAntibodies \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Overfull \hbox (49.87175pt too wide) in paragraph at lines 215--216 []| \T1/txtt/m/n/10 laser_measles.biweekly.components.fadeout_tracker\T1/qtm/m/ n/10 , Overfull \hbox (18.37184pt too wide) in paragraph at lines 216--217 []| \T1/txtt/m/n/10 laser_measles.biweekly.components.infection\T1/qtm/m/n/10 , Overfull \hbox (13.12186pt too wide) in paragraph at lines 220--221 []| \T1/txtt/m/n/10 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(badness 10000) in paragraph at lines 261--263 []\T1/txtt/m/n/10 nb_update_exposure_timers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 I n-cu-ba-tion static Underfull \hbox (badness 5878) in paragraph at lines 263--265 []\T1/txtt/m/n/10 nb_update_ma_timers() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 Ma-ter- nalAn-ti-bod-ies static Underfull \hbox (badness 10000) in paragraph at lines 292--294 []\T1/txtt/m/n/10 plot_dataframe() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 292--294 \T1/qtm/m/it/10 laser_measles.demographics.shapefiles\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 295--296 []\T1/txtt/m/n/10 population_raster_path \T1/qtm/m/n/10 (\T1/qtm/m/it/10 Raster -Patch-Con-fig at- [53] Underfull \hbox (badness 10000) in paragraph at lines 299--301 []\T1/txtt/m/n/10 RasterPatchConfig \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 299--301 \T1/qtm/m/it/10 laser_measles.demographics.raster_patch\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 301--303 []\T1/txtt/m/n/10 RasterPatchGenerator \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in Underfull \hbox (badness 10000) in paragraph at lines 301--303 \T1/qtm/m/it/10 laser_measles.demographics.raster_patch\T1/qtm/m/n/10 ), Underfull \hbox (badness 10000) in paragraph at lines 310--312 []\T1/txtt/m/n/10 seed_infections_in_patch() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 312--314 []\T1/txtt/m/n/10 seed_infections_randomly() \T1/qtm/m/n/10 (\T1/qtm/m/it/10 in mod-ule Underfull \hbox (badness 10000) in paragraph at lines 321--323 []\T1/txtt/m/n/10 ShapefileProtocol \T1/qtm/m/n/10 (\T1/qtm/m/it/10 class in [54]) (./institute-for-disease-modeling-laser-measles.aux) ) (see the transcript file for additional information){/usr/share/texmf/fonts/enc /dvips/tex-gyre/q-ts1.enc}{/usr/share/texmf/fonts/enc/dvips/tex-gyre/q-ec.enc}< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmsy10.pfb>< /usr/share/texlive/texmf-dist/fonts/type1/public/txfonts/t1xtt.pfb> Output written on institute-for-disease-modeling-laser-measles.pdf (58 pages, 2 91036 bytes). Transcript written on institute-for-disease-modeling-laser-measles.log. Latexmk: Index file 'institute-for-disease-modeling-laser-measles.idx' was written Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Latexmk: Log file says output to 'institute-for-disease-modeling-laser-measles.pdf' Collected error summary (may duplicate other messages): pdflatex: Command for 'pdflatex' gave return code 1 Refer to 'institute-for-disease-modeling-laser-measles.log' for details Latexmk: Examining 'institute-for-disease-modeling-laser-measles.log' === TeX engine is 'pdfTeX' Latexmk: Errors, in force_mode: so I tried finishing targets [rtd-command-info] start-time: 2025-06-07T01:43:43.535279Z, end-time: 2025-06-07T01:43:55.961324Z, duration: 12, exit-code: 0 python -m sphinx -T -b epub -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/epub Running Sphinx v8.2.3 loading translations [en]... done making output directory... done loading pickled environment... The configuration has changed (4 options: 'html_static_path', 'latex_documents', 'nbsphinx_requirejs_options', 'nbsphinx_requirejs_path') done [autosummary] generating autosummary for: api/index.rst, authors.rst, changelog.rst, contributing.rst, index.rst, installation.rst, readme.rst, reference/laser_measles.biweekly.components.rst, reference/laser_measles.biweekly.rst, reference/laser_measles.demographics.rst, reference/laser_measles.generic.rst, reference/laser_measles.nigeria.rst, reference/laser_measles.rst, reference/modules.rst, usage.rst WARNING: Failed to import laser_measles.biweekly.components. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.routine_immunization. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.components.vital_dynamics. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.mixing. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.model. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' WARNING: Failed to import laser_measles.biweekly.params. Possible hints: * ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization' * AttributeError: module 'laser_measles' has no attribute 'biweekly' Writing evaluated template result to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/_readthedocs/epub/_static/nbsphinx-code-cells.css building [mo]: targets for 0 po files that are out of date writing output... building [epub]: targets for 15 source files that are out of date updating environment: 0 added, 2 changed, 0 removed reading sources... [ 50%] reference/laser_measles.biweekly reading sources... [100%] reference/laser_measles.biweekly.components WARNING: autodoc: failed to import module 'biweekly' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.mixing' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.model' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.params' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.routine_immunization' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] WARNING: autodoc: failed to import module 'biweekly.components.vital_dynamics' from module 'laser_measles'; the following exception was raised: ['Traceback (most recent call last):\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 269, in import_object\n module = import_module(modname, try_reload=True)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/sphinx/ext/autodoc/importer.py", line 175, in import_module\n module = importlib.import_module(modname)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "/home/docs/.asdf/installs/python/3.12.10/lib/python3.12/importlib/__init__.py", line 90, in import_module\n return _bootstrap._gcd_import(name[level:], package, level)\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n', ' File "", line 1387, in _gcd_import\n', ' File "", line 1360, in _find_and_load\n', ' File "", line 1331, in _find_and_load_unlocked\n', ' File "", line 935, in _load_unlocked\n', ' File "", line 999, in exec_module\n', ' File "", line 488, in _call_with_frames_removed\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/__init__.py", line 2, in \n from .model import BiweeklyModel\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/model.py", line 43, in \n from laser_measles.biweekly.components import Infection\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/__init__.py", line 3, in \n from .vital_dynamics import VitalDynamics\n', ' File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/envs/latest/lib/python3.12/site-packages/laser_measles/biweekly/components/vital_dynamics.py", line 4, in \n from laser_measles.biweekly.components.routine_immunization import RoutineImmunization\n', "ModuleNotFoundError: No module named 'laser_measles.biweekly.components.routine_immunization'\n"] [autodoc.import_object] looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-laser-measles/checkouts/latest/docs/api/index.rst: WARNING: document isn't included in any toctree [toc.not_included] done preparing documents... done copying assets... copying static files... 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