Read the Docs build information Build id: 2823062 Project: institute-for-disease-modeling-synthpops-test Version: latest Commit: 610c18fe5ebac4d967eab329c61db54c75568919 Date: 2025-02-20T16:44:52.217783Z State: finished Success: False [rtd-command-info] start-time: 2025-02-20T16:44:53.288103Z, end-time: 2025-02-20T16:44:53.997041Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/InstituteforDiseaseModeling/synthpops.git . Cloning into '.'... [rtd-command-info] start-time: 2025-02-20T16:44:54.068935Z, end-time: 2025-02-20T16:44:55.343302Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main From https://github.com/InstituteforDiseaseModeling/synthpops * [new tag] v1.6.0 -> v1.6.0 * [new tag] v1.6.1 -> v1.6.1 * [new tag] v1.7.5 -> v1.7.5 * [new tag] v1.7.6 -> v1.7.6 * [new tag] v1.7.7 -> v1.7.7 * [new tag] v1.8.0 -> v1.8.0 * [new tag] v1.8.1 -> v1.8.1 * [new tag] v1.8.2 -> v1.8.2 * [new tag] v1.8.3 -> v1.8.3 * [new tag] v1.8.4 -> v1.8.4 * [new tag] v1.9.0 -> v1.9.0 [rtd-command-info] start-time: 2025-02-20T16:44:55.464736Z, end-time: 2025-02-20T16:44:55.542477Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 610c18f Merge pull request #544 from amath-idm/fix-docs-build2 [rtd-command-info] start-time: 2025-02-20T16:44:55.603378Z, end-time: 2025-02-20T16:44:55.650628Z, duration: 0, exit-code: 0 cat .readthedocs.yml # .readthedocs.yaml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-22.04 tools: python: "3.11" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py # If using Sphinx, optionally build your docs in additional formats such as PDF #formats: # - htmlzip # Optionally declare the Python requirements required to build your docs python: install: - requirements: docs/requirements.txt - method: pip path: . [rtd-command-info] start-time: 2025-02-20T16:45:00.231628Z, end-time: 2025-02-20T16:45:00.294275Z, duration: 0, exit-code: 0 asdf global python 3.11.10 [rtd-command-info] start-time: 2025-02-20T16:45:00.614653Z, end-time: 2025-02-20T16:45:01.454540Z, duration: 0, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.11.10.final.0-64 in 559ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2025-02-20T16:45:01.518724Z, end-time: 2025-02-20T16:45:09.862483Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (23.1) Collecting pip Downloading pip-25.0.1-py3-none-any.whl (1.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 10.4 MB/s eta 0:00:00 Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (67.6.1) Collecting setuptools Downloading setuptools-75.8.0-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 22.5 MB/s eta 0:00:00 Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 67.6.1 Uninstalling setuptools-67.6.1: Successfully uninstalled setuptools-67.6.1 Attempting uninstall: pip Found existing installation: pip 23.1 Uninstalling pip-23.1: Successfully uninstalled pip-23.1 Successfully installed pip-25.0.1 setuptools-75.8.0 [rtd-command-info] start-time: 2025-02-20T16:45:09.966193Z, end-time: 2025-02-20T16:45:14.840317Z, duration: 4, exit-code: 0 python -m pip install --upgrade --no-cache-dir sphinx Collecting sphinx Downloading sphinx-8.2.0-py3-none-any.whl.metadata (7.0 kB) Collecting sphinxcontrib-applehelp>=1.0.7 (from sphinx) Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-devhelp>=1.0.6 (from sphinx) Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-htmlhelp>=2.0.6 (from sphinx) Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-jsmath>=1.0.1 (from sphinx) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting sphinxcontrib-qthelp>=1.0.6 (from sphinx) Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx) Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl.metadata (2.4 kB) Collecting Jinja2>=3.1 (from sphinx) Downloading jinja2-3.1.5-py3-none-any.whl.metadata (2.6 kB) Collecting Pygments>=2.17 (from sphinx) Downloading pygments-2.19.1-py3-none-any.whl.metadata (2.5 kB) Collecting docutils<0.22,>=0.20 (from sphinx) Downloading docutils-0.21.2-py3-none-any.whl.metadata (2.8 kB) Collecting snowballstemmer>=2.2 (from sphinx) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl.metadata (6.5 kB) Collecting babel>=2.13 (from sphinx) Downloading babel-2.17.0-py3-none-any.whl.metadata (2.0 kB) Collecting alabaster>=0.7.14 (from sphinx) Downloading alabaster-1.0.0-py3-none-any.whl.metadata (2.8 kB) Collecting imagesize>=1.3 (from sphinx) Downloading imagesize-1.4.1-py2.py3-none-any.whl.metadata (1.5 kB) Collecting requests>=2.30.0 (from sphinx) Downloading requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) Collecting roman-numerals-py>=1.0.0 (from sphinx) Downloading roman_numerals_py-3.0.0-py3-none-any.whl.metadata (3.6 kB) Collecting packaging>=23.0 (from sphinx) Downloading packaging-24.2-py3-none-any.whl.metadata (3.2 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=3.1->sphinx) Downloading MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.30.0->sphinx) Downloading charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Collecting idna<4,>=2.5 (from requests>=2.30.0->sphinx) Downloading idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting urllib3<3,>=1.21.1 (from requests>=2.30.0->sphinx) Downloading urllib3-2.3.0-py3-none-any.whl.metadata (6.5 kB) Collecting certifi>=2017.4.17 (from requests>=2.30.0->sphinx) Downloading certifi-2025.1.31-py3-none-any.whl.metadata (2.5 kB) Downloading sphinx-8.2.0-py3-none-any.whl (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 124.3 MB/s eta 0:00:00 Downloading alabaster-1.0.0-py3-none-any.whl (13 kB) Downloading babel-2.17.0-py3-none-any.whl (10.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.2/10.2 MB 220.5 MB/s eta 0:00:00 Downloading docutils-0.21.2-py3-none-any.whl (587 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 587.4/587.4 kB 472.2 MB/s eta 0:00:00 Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Downloading jinja2-3.1.5-py3-none-any.whl (134 kB) Downloading packaging-24.2-py3-none-any.whl (65 kB) Downloading pygments-2.19.1-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 507.2 MB/s eta 0:00:00 Downloading requests-2.32.3-py3-none-any.whl (64 kB) Downloading roman_numerals_py-3.0.0-py3-none-any.whl (4.4 kB) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) Downloading sphinxcontrib_applehelp-2.0.0-py3-none-any.whl (119 kB) Downloading sphinxcontrib_devhelp-2.0.0-py3-none-any.whl (82 kB) Downloading sphinxcontrib_htmlhelp-2.1.0-py3-none-any.whl (98 kB) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Downloading sphinxcontrib_qthelp-2.0.0-py3-none-any.whl (88 kB) Downloading sphinxcontrib_serializinghtml-2.0.0-py3-none-any.whl (92 kB) Downloading certifi-2025.1.31-py3-none-any.whl (166 kB) Downloading charset_normalizer-3.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (143 kB) Downloading idna-3.10-py3-none-any.whl (70 kB) Downloading MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Downloading urllib3-2.3.0-py3-none-any.whl (128 kB) Installing collected packages: snowballstemmer, urllib3, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, roman-numerals-py, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, sphinx Successfully installed Jinja2-3.1.5 MarkupSafe-3.0.2 Pygments-2.19.1 alabaster-1.0.0 babel-2.17.0 certifi-2025.1.31 charset-normalizer-3.4.1 docutils-0.21.2 idna-3.10 imagesize-1.4.1 packaging-24.2 requests-2.32.3 roman-numerals-py-3.0.0 snowballstemmer-2.2.0 sphinx-8.2.0 sphinxcontrib-applehelp-2.0.0 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.1.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 urllib3-2.3.0 [rtd-command-info] start-time: 2025-02-20T16:45:14.912638Z, end-time: 2025-02-20T16:45:17.317248Z, duration: 2, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting pandoc (from -r docs/requirements.txt (line 1)) Downloading pandoc-2.4.tar.gz (34 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pypandoc (from -r docs/requirements.txt (line 2)) Downloading pypandoc-1.15-py3-none-any.whl.metadata (16 kB) Requirement already satisfied: sphinx>=7.3.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from -r docs/requirements.txt (line 3)) (8.2.0) Collecting sphinx-autodoc-typehints (from -r docs/requirements.txt (line 4)) Downloading sphinx_autodoc_typehints-3.1.0-py3-none-any.whl.metadata (7.9 kB) Collecting pydata-sphinx-theme (from -r docs/requirements.txt (line 5)) Downloading pydata_sphinx_theme-0.16.1-py3-none-any.whl.metadata (7.5 kB) Collecting sphinx-design (from -r docs/requirements.txt (line 6)) Downloading sphinx_design-0.6.1-py3-none-any.whl.metadata (5.5 kB) Collecting readthedocs-sphinx-search (from -r docs/requirements.txt (line 7)) Downloading readthedocs_sphinx_search-0.3.2-py3-none-any.whl.metadata (2.4 kB) Collecting sphinxcontrib-napoleon (from -r docs/requirements.txt (line 8)) Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl.metadata (6.2 kB) Collecting plantweb (from -r docs/requirements.txt (line 9)) Downloading plantweb-1.3.0-py3-none-any.whl.metadata (4.1 kB) Collecting plumbum (from pandoc->-r docs/requirements.txt (line 1)) Downloading plumbum-1.9.0-py3-none-any.whl.metadata (10 kB) Collecting ply (from pandoc->-r docs/requirements.txt (line 1)) Downloading ply-3.11-py2.py3-none-any.whl.metadata (844 bytes) Requirement already satisfied: sphinxcontrib-applehelp>=1.0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: sphinxcontrib-devhelp>=1.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.1.0) Requirement already satisfied: sphinxcontrib-jsmath>=1.0.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (1.0.1) Requirement already satisfied: sphinxcontrib-qthelp>=1.0.6 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.0.0) Requirement already satisfied: Jinja2>=3.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.1.5) Requirement already satisfied: Pygments>=2.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.19.1) Requirement already satisfied: docutils<0.22,>=0.20 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (0.21.2) Requirement already satisfied: snowballstemmer>=2.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.2.0) Requirement already satisfied: babel>=2.13 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.17.0) Requirement already satisfied: alabaster>=0.7.14 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (1.0.0) Requirement already satisfied: imagesize>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (1.4.1) Requirement already satisfied: requests>=2.30.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.32.3) Requirement already satisfied: roman-numerals-py>=1.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.0.0) Requirement already satisfied: packaging>=23.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (24.2) Collecting beautifulsoup4 (from pydata-sphinx-theme->-r docs/requirements.txt (line 5)) Downloading beautifulsoup4-4.13.3-py3-none-any.whl.metadata (3.8 kB) Collecting accessible-pygments (from pydata-sphinx-theme->-r docs/requirements.txt (line 5)) Downloading accessible_pygments-0.0.5-py3-none-any.whl.metadata (10 kB) Collecting typing-extensions (from pydata-sphinx-theme->-r docs/requirements.txt (line 5)) Downloading typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) Collecting six>=1.5.2 (from sphinxcontrib-napoleon->-r docs/requirements.txt (line 8)) Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting pockets>=0.3 (from sphinxcontrib-napoleon->-r docs/requirements.txt (line 8)) Downloading pockets-0.9.1-py2.py3-none-any.whl.metadata (4.4 kB) Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from Jinja2>=3.1->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.0.2) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.4.1) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (3.10) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2.3.0) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from requests>=2.30.0->sphinx>=7.3.7->-r docs/requirements.txt (line 3)) (2025.1.31) Collecting soupsieve>1.2 (from beautifulsoup4->pydata-sphinx-theme->-r docs/requirements.txt (line 5)) Downloading soupsieve-2.6-py3-none-any.whl.metadata (4.6 kB) Downloading pypandoc-1.15-py3-none-any.whl (21 kB) Downloading sphinx_autodoc_typehints-3.1.0-py3-none-any.whl (20 kB) Downloading pydata_sphinx_theme-0.16.1-py3-none-any.whl (6.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.7/6.7 MB 144.1 MB/s eta 0:00:00 Downloading sphinx_design-0.6.1-py3-none-any.whl (2.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.2/2.2 MB 264.3 MB/s eta 0:00:00 Downloading readthedocs_sphinx_search-0.3.2-py3-none-any.whl (21 kB) Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Downloading plantweb-1.3.0-py3-none-any.whl (20 kB) Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Downloading six-1.17.0-py2.py3-none-any.whl (11 kB) Downloading accessible_pygments-0.0.5-py3-none-any.whl (1.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 566.7 MB/s eta 0:00:00 Downloading beautifulsoup4-4.13.3-py3-none-any.whl (186 kB) Downloading typing_extensions-4.12.2-py3-none-any.whl (37 kB) Downloading plumbum-1.9.0-py3-none-any.whl (127 kB) Downloading ply-3.11-py2.py3-none-any.whl (49 kB) Downloading soupsieve-2.6-py3-none-any.whl (36 kB) Building wheels for collected packages: pandoc Building wheel for pandoc (setup.py): started Building wheel for pandoc (setup.py): finished with status 'done' Created wheel for pandoc: filename=pandoc-2.4-py3-none-any.whl size=34843 sha256=7bbe90f5b447dc8cdfae6082e328a96a74f2b7cb5d43c1ef104c3781f6de6d1f Stored in directory: /tmp/pip-ephem-wheel-cache-iwm09via/wheels/4f/d7/32/c6c9b7b05e852e920fd72174487be3a0f18e633a7adcc303be Successfully built pandoc Installing collected packages: ply, typing-extensions, soupsieve, six, readthedocs-sphinx-search, pypandoc, plumbum, accessible-pygments, pockets, plantweb, pandoc, beautifulsoup4, sphinxcontrib-napoleon, sphinx-design, sphinx-autodoc-typehints, pydata-sphinx-theme Successfully installed accessible-pygments-0.0.5 beautifulsoup4-4.13.3 pandoc-2.4 plantweb-1.3.0 plumbum-1.9.0 ply-3.11 pockets-0.9.1 pydata-sphinx-theme-0.16.1 pypandoc-1.15 readthedocs-sphinx-search-0.3.2 six-1.17.0 soupsieve-2.6 sphinx-autodoc-typehints-3.1.0 sphinx-design-0.6.1 sphinxcontrib-napoleon-0.7 typing-extensions-4.12.2 [rtd-command-info] start-time: 2025-02-20T16:45:17.379315Z, end-time: 2025-02-20T16:45:57.183619Z, duration: 39, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir . Processing /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/checkouts/latest Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting sciris>=1.1.1 (from synthpops==1.10.5) Downloading sciris-3.2.0-py3-none-any.whl.metadata (3.6 kB) Collecting matplotlib>=3.3.0 (from synthpops==1.10.5) Downloading matplotlib-3.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) Collecting numpy (from synthpops==1.10.5) Downloading numpy-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB) Collecting scipy (from synthpops==1.10.5) Downloading scipy-1.15.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) Collecting pandas>=1.2.3 (from synthpops==1.10.5) Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) Collecting numba (from synthpops==1.10.5) Downloading numba-0.61.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.8 kB) Collecting networkx>=2.3 (from synthpops==1.10.5) Downloading networkx-3.4.2-py3-none-any.whl.metadata (6.3 kB) Collecting cmocean (from synthpops==1.10.5) Downloading cmocean-4.0.3-py3-none-any.whl.metadata (4.2 kB) Collecting cmasher (from synthpops==1.10.5) Downloading cmasher-1.9.2-py3-none-any.whl.metadata (7.9 kB) Collecting seaborn (from synthpops==1.10.5) Downloading seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB) Collecting graphviz (from synthpops==1.10.5) Downloading graphviz-0.20.3-py3-none-any.whl.metadata (12 kB) Collecting pydot (from synthpops==1.10.5) Downloading pydot-3.0.4-py3-none-any.whl.metadata (10 kB) Collecting jsonobject (from synthpops==1.10.5) Downloading jsonobject-2.2.0.tar.gz (405 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting jsbeautifier (from synthpops==1.10.5) Downloading jsbeautifier-1.15.3-py3-none-any.whl.metadata (374 bytes) Collecting contourpy>=1.0.1 (from matplotlib>=3.3.0->synthpops==1.10.5) Downloading contourpy-1.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.4 kB) Collecting cycler>=0.10 (from matplotlib>=3.3.0->synthpops==1.10.5) Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib>=3.3.0->synthpops==1.10.5) Downloading fonttools-4.56.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (101 kB) Collecting kiwisolver>=1.3.1 (from matplotlib>=3.3.0->synthpops==1.10.5) Downloading kiwisolver-1.4.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.2 kB) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from matplotlib>=3.3.0->synthpops==1.10.5) (24.2) Collecting pillow>=8 (from matplotlib>=3.3.0->synthpops==1.10.5) Downloading pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (9.1 kB) Collecting pyparsing>=2.3.1 (from matplotlib>=3.3.0->synthpops==1.10.5) Downloading pyparsing-3.2.1-py3-none-any.whl.metadata (5.0 kB) Collecting python-dateutil>=2.7 (from matplotlib>=3.3.0->synthpops==1.10.5) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pytz>=2020.1 (from pandas>=1.2.3->synthpops==1.10.5) Downloading pytz-2025.1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas>=1.2.3->synthpops==1.10.5) Downloading tzdata-2025.1-py2.py3-none-any.whl.metadata (1.4 kB) Collecting openpyxl (from sciris>=1.1.1->synthpops==1.10.5) Downloading openpyxl-3.1.5-py2.py3-none-any.whl.metadata (2.5 kB) Collecting xlsxwriter (from sciris>=1.1.1->synthpops==1.10.5) Downloading XlsxWriter-3.2.2-py3-none-any.whl.metadata (2.8 kB) Collecting psutil (from sciris>=1.1.1->synthpops==1.10.5) Downloading psutil-7.0.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (22 kB) Collecting dill (from sciris>=1.1.1->synthpops==1.10.5) Downloading dill-0.3.9-py3-none-any.whl.metadata (10 kB) Collecting zstandard (from sciris>=1.1.1->synthpops==1.10.5) Downloading zstandard-0.23.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Collecting multiprocess (from sciris>=1.1.1->synthpops==1.10.5) Downloading multiprocess-0.70.17-py311-none-any.whl.metadata (7.2 kB) Collecting jsonpickle (from sciris>=1.1.1->synthpops==1.10.5) Downloading jsonpickle-4.0.2-py3-none-any.whl.metadata (8.2 kB) Collecting pyyaml (from sciris>=1.1.1->synthpops==1.10.5) Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from sciris>=1.1.1->synthpops==1.10.5) (75.8.0) Collecting gitpython (from sciris>=1.1.1->synthpops==1.10.5) Downloading GitPython-3.1.44-py3-none-any.whl.metadata (13 kB) Collecting jellyfish (from sciris>=1.1.1->synthpops==1.10.5) Downloading jellyfish-1.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.6 kB) Collecting tqdm (from sciris>=1.1.1->synthpops==1.10.5) Downloading tqdm-4.67.1-py3-none-any.whl.metadata (57 kB) Collecting memory-profiler (from sciris>=1.1.1->synthpops==1.10.5) Downloading memory_profiler-0.61.0-py3-none-any.whl.metadata (20 kB) Collecting line-profiler (from sciris>=1.1.1->synthpops==1.10.5) Downloading line_profiler-4.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (34 kB) Collecting colorspacious>=1.1.0 (from cmasher->synthpops==1.10.5) Downloading colorspacious-1.1.2-py2.py3-none-any.whl.metadata (3.6 kB) Requirement already satisfied: six>=1.13.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages (from jsbeautifier->synthpops==1.10.5) (1.17.0) Collecting editorconfig>=0.12.2 (from jsbeautifier->synthpops==1.10.5) Downloading EditorConfig-0.17.0-py3-none-any.whl.metadata (3.8 kB) Collecting llvmlite<0.45,>=0.44.0dev0 (from numba->synthpops==1.10.5) Downloading llvmlite-0.44.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.8 kB) Collecting numpy (from synthpops==1.10.5) Downloading numpy-2.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (62 kB) Collecting gitdb<5,>=4.0.1 (from gitpython->sciris>=1.1.1->synthpops==1.10.5) Downloading gitdb-4.0.12-py3-none-any.whl.metadata (1.2 kB) Collecting et-xmlfile (from openpyxl->sciris>=1.1.1->synthpops==1.10.5) Downloading et_xmlfile-2.0.0-py3-none-any.whl.metadata (2.7 kB) Collecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->gitpython->sciris>=1.1.1->synthpops==1.10.5) Downloading smmap-5.0.2-py3-none-any.whl.metadata (4.3 kB) Downloading matplotlib-3.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.6/8.6 MB 169.0 MB/s eta 0:00:00 Downloading networkx-3.4.2-py3-none-any.whl (1.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 219.3 MB/s eta 0:00:00 Downloading pandas-2.2.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.1/13.1 MB 171.8 MB/s eta 0:00:00 Downloading sciris-3.2.0-py3-none-any.whl (244 kB) Downloading cmasher-1.9.2-py3-none-any.whl (506 kB) Downloading cmocean-4.0.3-py3-none-any.whl (421 kB) Downloading graphviz-0.20.3-py3-none-any.whl (47 kB) Downloading jsbeautifier-1.15.3-py3-none-any.whl (94 kB) Downloading numba-0.61.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.8/3.8 MB 144.9 MB/s eta 0:00:00 Downloading numpy-2.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.3/16.3 MB 197.0 MB/s eta 0:00:00 Downloading pydot-3.0.4-py3-none-any.whl (35 kB) Downloading scipy-1.15.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (37.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.6/37.6 MB 198.6 MB/s eta 0:00:00 Downloading seaborn-0.13.2-py3-none-any.whl (294 kB) Downloading colorspacious-1.1.2-py2.py3-none-any.whl (37 kB) Downloading contourpy-1.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (326 kB) Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB) Downloading EditorConfig-0.17.0-py3-none-any.whl (16 kB) Downloading fonttools-4.56.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.9/4.9 MB 203.8 MB/s eta 0:00:00 Downloading kiwisolver-1.4.8-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 320.4 MB/s eta 0:00:00 Downloading llvmlite-0.44.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (42.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.4/42.4 MB 187.8 MB/s eta 0:00:00 Downloading pillow-11.1.0-cp311-cp311-manylinux_2_28_x86_64.whl (4.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 207.1 MB/s eta 0:00:00 Downloading pyparsing-3.2.1-py3-none-any.whl (107 kB) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Downloading pytz-2025.1-py2.py3-none-any.whl (507 kB) Downloading tzdata-2025.1-py2.py3-none-any.whl (346 kB) Downloading dill-0.3.9-py3-none-any.whl (119 kB) Downloading GitPython-3.1.44-py3-none-any.whl (207 kB) Downloading jellyfish-1.1.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (347 kB) Downloading jsonpickle-4.0.2-py3-none-any.whl (46 kB) Downloading line_profiler-4.2.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (750 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 750.2/750.2 kB 336.0 MB/s eta 0:00:00 Downloading memory_profiler-0.61.0-py3-none-any.whl (31 kB) Downloading multiprocess-0.70.17-py311-none-any.whl (144 kB) Downloading openpyxl-3.1.5-py2.py3-none-any.whl (250 kB) Downloading psutil-7.0.0-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (277 kB) Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 763.0/763.0 kB 889.6 MB/s eta 0:00:00 Downloading tqdm-4.67.1-py3-none-any.whl (78 kB) Downloading XlsxWriter-3.2.2-py3-none-any.whl (165 kB) Downloading zstandard-0.23.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.4/5.4 MB 207.3 MB/s eta 0:00:00 Downloading gitdb-4.0.12-py3-none-any.whl (62 kB) Downloading et_xmlfile-2.0.0-py3-none-any.whl (18 kB) Downloading smmap-5.0.2-py3-none-any.whl (24 kB) Building wheels for collected packages: synthpops, jsonobject Building wheel for synthpops (setup.py): started Building wheel for synthpops (setup.py): finished with status 'done' Created wheel for synthpops: filename=synthpops-1.10.5-py3-none-any.whl size=1526980 sha256=6e250b64023881e2e5602c656e606853e91599a3b696136f7501825c759bbf55 Stored in directory: /tmp/pip-ephem-wheel-cache-56_zid8t/wheels/55/96/a1/ff11c0227cb951974ca9d276ac81d2620b7907a3b2a1712829 Building wheel for jsonobject (setup.py): started Building wheel for jsonobject (setup.py): finished with status 'done' Created wheel for jsonobject: filename=jsonobject-2.2.0-cp311-cp311-linux_x86_64.whl size=1842198 sha256=1d2c250f7f3bf20847c8f301940f6724ca21126d5910ce8398c544aa2c8d9caa Stored in directory: /tmp/pip-ephem-wheel-cache-56_zid8t/wheels/a4/a1/47/6c325aee0ec8b0352ef0ff9a5bbd72a3e6ba6da43cd8646661 Successfully built synthpops jsonobject Installing collected packages: pytz, jsonobject, editorconfig, zstandard, xlsxwriter, tzdata, tqdm, smmap, pyyaml, python-dateutil, pyparsing, psutil, pillow, numpy, networkx, llvmlite, line-profiler, kiwisolver, jsonpickle, jsbeautifier, jellyfish, graphviz, fonttools, et-xmlfile, dill, cycler, scipy, pydot, pandas, openpyxl, numba, multiprocess, memory-profiler, gitdb, contourpy, colorspacious, matplotlib, gitpython, seaborn, sciris, cmocean, cmasher, synthpops Successfully installed cmasher-1.9.2 cmocean-4.0.3 colorspacious-1.1.2 contourpy-1.3.1 cycler-0.12.1 dill-0.3.9 editorconfig-0.17.0 et-xmlfile-2.0.0 fonttools-4.56.0 gitdb-4.0.12 gitpython-3.1.44 graphviz-0.20.3 jellyfish-1.1.3 jsbeautifier-1.15.3 jsonobject-2.2.0 jsonpickle-4.0.2 kiwisolver-1.4.8 line-profiler-4.2.0 llvmlite-0.44.0 matplotlib-3.10.0 memory-profiler-0.61.0 multiprocess-0.70.17 networkx-3.4.2 numba-0.61.0 numpy-2.1.3 openpyxl-3.1.5 pandas-2.2.3 pillow-11.1.0 psutil-7.0.0 pydot-3.0.4 pyparsing-3.2.1 python-dateutil-2.9.0.post0 pytz-2025.1 pyyaml-6.0.2 scipy-1.15.2 sciris-3.2.0 seaborn-0.13.2 smmap-5.0.2 synthpops-1.10.5 tqdm-4.67.1 tzdata-2025.1 xlsxwriter-3.2.2 zstandard-0.23.0 [rtd-command-info] start-time: 2025-02-20T16:45:57.366423Z, end-time: 2025-02-20T16:45:57.415478Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. # # This file does only contain a selection of the most common options. For a # full list see the documentation: # http://www.sphinx-doc.org/en/master/config # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import sys import synthpops as sp on_rtd = os.environ.get('READTHEDOCS') == 'True' # -- Project information ----------------------------------------------------- project = 'SynthPops' copyright = f'2020 - 2021, Institute for Disease Modeling. All rights reserved.\nThese docs were built for SynthPops version {sp.__version__}.\n' author = 'Institute for Disease Modeling' # The short X.Y version version = sp.__version__ # The full version, including alpha/beta/rc tags release = sp.__version__ # Rename "synthpops package" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration ------------------------------------------------ # If your documentation needs a minimal Sphinx version, state it here. # needs_sphinx = '1.0' # Add any Sphinx extension module names here extensions = [ "sphinx.ext.autodoc", # Core Sphinx library for auto html doc generation from docstrings "sphinx.ext.autosummary", # Create neat summary tables for modules/classes/methods etc -- causes warnings with Napoleon however "sphinx.ext.intersphinx", "sphinx.ext.viewcode", # Add a link to the Python source code for classes, functions etc. "sphinx.ext.napoleon", "sphinx.ext.autosectionlabel", "sphinx_autodoc_typehints", # Automatically document param types (less noise in class signature) "sphinx_design", # Add e.g. grid layout 'sphinx_search.extension', # search across multiple docsets in domain ] # Use Google docstrings napoleon_google_docstring = True # Configure autosummary autosummary_generate = True # Turn on sphinx.ext.autosummary autosummary_ignore_module_all = False # Respect __all__ autodoc_member_order = 'bysource' # Keep original ordering add_module_names = False # NB, does not work autodoc_inherit_docstrings = False # Stops sublcasses from including docs from parent classes # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # Syntax highlighting style pygments_style = "sphinx" modindex_common_prefix = ["synthpops."] # List of patterns, relative to source directory, to exclude exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"] # Suppress certain warnings suppress_warnings = ['autosectionlabel.*'] # Add variable substitutions rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ------------------------------------------------- html_theme = "pydata_sphinx_theme" html_theme_options = { "collapse_navigation": False, "navigation_depth": 3, "show_prev_next": True, "icon_links": [ {"name": "Web", "url": "https://starsim.org", "icon": "fas fa-home"}, { "name": "GitHub", "url": "https://github.com/starsimhub/starsim", "icon": "fab fa-github-square", }, ], "navbar_end": ["theme-switcher", "navbar-icon-links"], "secondary_sidebar_items": ["navbar-side"], "header_links_before_dropdown": 5, "footer_start": ["copyright", "footer_start"], "footer_end": ["theme-version", "footer_end"], } html_sidebars = { "**": ["sidebar-nav-bs", "page-toc"], } html_logo = "images/IDM_white.png" html_favicon = "images/favicon.ico" html_static_path = ['_static'] html_context = { 'rtd_url': 'https://docs.idmod.org/projects/synthpops/en/latest', "versions_dropdown": { "latest": "devel (latest)", "stable": "current (stable)", }, "default_mode": "light", } # Add any extra paths that contain custom files if not on_rtd: html_extra_path = ['robots.txt'] # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. html_last_updated_fmt = '%Y-%b-%d' html_show_sourcelink = True html_show_sphinx = False html_copy_source = False htmlhelp_basename = 'SynthPops' # Add customizations def setup(app): app.add_css_file("theme_overrides.css") # OpenSearch options html_use_opensearch = 'docs.idmod.org/projects/synthpops/en/latest' # -- RTD Sphinx search for searching across the entire domain, default child ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } [rtd-command-info] start-time: 2025-02-20T16:45:57.478682Z, end-time: 2025-02-20T16:46:02.627806Z, duration: 5, exit-code: 2 python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v8.2.0 Configuration error! Versions ======== * Platform: linux; (Linux-5.19.0-1028-aws-x86_64-with-glibc2.35) * Python version: 3.11.10 (CPython) * Sphinx version: 8.2.0 * Docutils version: 0.21.2 * Jinja2 version: 3.1.5 * Pygments version: 2.19.1 Last Messages ============= None. Loaded Extensions ================= None. Traceback ========= Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages/sphinx/config.py", line 601, in eval_config_file exec(code, namespace) # NoQA: S102 ^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/checkouts/latest/docs/conf.py", line 34, in with open(filename) as f: # Read existing file ^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: 'modules.rst' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages/sphinx/cmd/build.py", line 414, in build_main app = Sphinx( ^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages/sphinx/application.py", line 266, in __init__ self.config = Config.read(self.confdir, confoverrides or {}, self.tags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages/sphinx/config.py", line 357, in read namespace = eval_config_file(filename, tags) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages/sphinx/config.py", line 616, in eval_config_file raise ConfigError(msg % traceback.format_exc()) from exc sphinx.errors.ConfigError: There is a programmable error in your configuration file: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/envs/latest/lib/python3.11/site-packages/sphinx/config.py", line 601, in eval_config_file exec(code, namespace) # NoQA: S102 ^^^^^^^^^^^^^^^^^^^^^ File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-synthpops-test/checkouts/latest/docs/conf.py", line 34, in with open(filename) as f: # Read existing file ^^^^^^^^^^^^^^ FileNotFoundError: [Errno 2] No such file or directory: 'modules.rst' The full traceback has been saved in: /tmp/sphinx-err-kz_ezuu2.log To report this error to the developers, please open an issue at . Thanks! Please also report this if it was a user error, so that a better error message can be provided next time.