Read the Docs build information Build id: 2239402 Project: institute-for-disease-modeling-fpsim Version: latest Commit: 25d504773a71b148c3e8fb1bbf55a14509b57102 Date: 2024-05-24T21:07:16.626857Z State: finished Success: True [rtd-command-info] start-time: 2024-05-24T21:07:17.838856Z, end-time: 2024-05-24T21:07:18.499744Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/fpsim/fpsim.git . Cloning into '.'... [rtd-command-info] start-time: 2024-05-24T21:07:18.598240Z, end-time: 2024-05-24T21:07:20.134980Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main From https://github.com/fpsim/fpsim * [new tag] v0.22.0 -> v0.22.0 * [new tag] v0.22.1 -> v0.22.1 * [new tag] v0.23.0 -> v0.23.0 * [new tag] v0.24.0 -> v0.24.0 * [new tag] v0.28.1 -> v0.28.1 [rtd-command-info] start-time: 2024-05-24T21:07:20.279638Z, end-time: 2024-05-24T21:07:20.383928Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 25d5047 Merge pull request #333 from fpsim/refactor/cleanup-todos-empowerment [rtd-command-info] start-time: 2024-05-24T21:07:20.456623Z, end-time: 2024-05-24T21:07:20.520021Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2024-05-24T21:07:20.587675Z, end-time: 2024-05-24T21:07:20.649403Z, duration: 0, exit-code: 0 cat .readthedocs.yaml # .readthedocs.yaml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-20.04 tools: python: "3.9" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py # If using Sphinx, optionally build your docs in additional formats such as PDF # formats: # Optionally declare the Python requirements required to build your docs python: install: - requirements: docs/requirements.txt - method: pip path: . [rtd-command-info] start-time: 2024-05-24T21:07:26.007012Z, end-time: 2024-05-24T21:07:26.086412Z, duration: 0, exit-code: 0 asdf global python 3.9.18 [rtd-command-info] start-time: 2024-05-24T21:07:26.500939Z, end-time: 2024-05-24T21:07:27.716694Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.9.18.final.0-64 in 898ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0 activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2024-05-24T21:07:27.791377Z, end-time: 2024-05-24T21:07:37.980481Z, duration: 10, exit-code: 0 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[rtd-command-info] start-time: 2024-05-24T21:07:44.516276Z, end-time: 2024-05-24T21:08:03.441538Z, duration: 18, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting pandoc (from -r docs/requirements.txt (line 1)) Downloading pandoc-2.3.tar.gz (33 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pypandoc (from -r docs/requirements.txt (line 2)) Downloading pypandoc-1.13-py3-none-any.whl.metadata (16 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from -r docs/requirements.txt (line 3)) (7.3.7) Collecting sphinx-autodoc-typehints (from -r docs/requirements.txt (line 4)) Downloading sphinx_autodoc_typehints-2.1.0-py3-none-any.whl.metadata (8.0 kB) Collecting pydata-sphinx-theme (from -r docs/requirements.txt (line 5)) Downloading 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for pandoc: filename=pandoc-2.3-py3-none-any.whl size=33262 sha256=5f67487a3dabe1aad5397f76a4fcf006101084909cf1f57ac157ab05c3838767 Stored in directory: /tmp/pip-ephem-wheel-cache-z3mp9t7o/wheels/69/e6/a1/1daa96d919c9e09a71473649b717b8da286f3f8d7719d1cfc5 Successfully built pandoc Installing collected packages: webencodings, wcwidth, pure-eval, ptyprocess, ply, fastjsonschema, typing-extensions, traitlets, tqdm, tornado, tinycss2, soupsieve, six, rpds-py, readthedocs-sphinx-search, pyzmq, PyYAML, pypandoc, psutil, prompt-toolkit, plumbum, platformdirs, pexpect, parso, pandocfilters, numpy, nest-asyncio, mistune, Mako, jupyterlab-pygments, greenlet, executing, exceptiongroup, defusedxml, decorator, debugpy, colorlog, attrs, accessible-pygments, sqlalchemy, referencing, python-dateutil, plantweb, pandoc, matplotlib-inline, jupyter-core, jedi, comm, bleach, beautifulsoup4, asttokens, stack-data, sphinx-design, sphinx-autodoc-typehints, pydata-sphinx-theme, jupyter-client, jsonschema-specifications, alembic, optuna, jsonschema, ipython, nbformat, ipykernel, nbclient, nbconvert, nbsphinx Successfully installed Mako-1.3.5 PyYAML-6.0.1 accessible-pygments-0.0.5 alembic-1.13.1 asttokens-2.4.1 attrs-23.2.0 beautifulsoup4-4.12.3 bleach-6.1.0 colorlog-6.8.2 comm-0.2.2 debugpy-1.8.1 decorator-5.1.1 defusedxml-0.7.1 exceptiongroup-1.2.1 executing-2.0.1 fastjsonschema-2.19.1 greenlet-3.0.3 ipykernel-6.29.4 ipython-8.18.1 jedi-0.19.1 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-client-8.6.2 jupyter-core-5.7.2 jupyterlab-pygments-0.3.0 matplotlib-inline-0.1.7 mistune-3.0.2 nbclient-0.10.0 nbconvert-7.13.0 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 numpy-1.26.4 optuna-3.6.1 pandoc-2.3 pandocfilters-1.5.1 parso-0.8.4 pexpect-4.9.0 plantweb-1.2.1 platformdirs-4.2.2 plumbum-1.8.3 ply-3.11 prompt-toolkit-3.0.43 psutil-5.9.8 ptyprocess-0.7.0 pure-eval-0.2.2 pydata-sphinx-theme-0.15.2 pypandoc-1.13 python-dateutil-2.9.0.post0 pyzmq-26.0.3 readthedocs-sphinx-search-0.3.2 referencing-0.35.1 rpds-py-0.18.1 six-1.16.0 soupsieve-2.5 sphinx-autodoc-typehints-2.1.0 sphinx-design-0.6.0 sqlalchemy-2.0.30 stack-data-0.6.3 tinycss2-1.3.0 tornado-6.4 tqdm-4.66.4 traitlets-5.14.3 typing-extensions-4.12.0 wcwidth-0.2.13 webencodings-0.5.1 [rtd-command-info] start-time: 2024-05-24T21:08:03.550462Z, end-time: 2024-05-24T21:08:35.267279Z, duration: 31, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir . 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Installing collected packages: pytz, zstandard, xlsxwriter, tzdata, smmap, scipy, pyparsing, pyarrow, pillow, patsy, memory-profiler, llvmlite, line-profiler, kiwisolver, jsonpickle, jellyfish, importlib-resources, fonttools, et-xmlfile, dill, cycler, contourpy, pandas, openpyxl, numba, multiprocess, matplotlib, gitdb, statsmodels, seaborn, mizani, gitpython, sciris, plotnine, fpsim Successfully installed contourpy-1.2.1 cycler-0.12.1 dill-0.3.8 et-xmlfile-1.1.0 fonttools-4.52.1 fpsim-0.28.3 gitdb-4.0.11 gitpython-3.1.43 importlib-resources-6.4.0 jellyfish-1.0.3 jsonpickle-3.0.4 kiwisolver-1.4.5 line-profiler-4.1.3 llvmlite-0.42.0 matplotlib-3.9.0 memory-profiler-0.61.0 mizani-0.11.4 multiprocess-0.70.16 numba-0.59.1 openpyxl-3.1.2 pandas-2.2.2 patsy-0.5.6 pillow-10.3.0 plotnine-0.13.6 pyarrow-16.1.0 pyparsing-3.1.2 pytz-2024.1 scipy-1.13.1 sciris-3.1.6 seaborn-0.13.2 smmap-5.0.1 statsmodels-0.14.2 tzdata-2024.1 xlsxwriter-3.2.0 zstandard-0.22.0 [rtd-command-info] start-time: 2024-05-24T21:08:35.824434Z, end-time: 2024-05-24T21:08:35.886266Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. import os import sys import sciris as sc import fpsim as fp # Set environment os.environ['SPHINX_BUILD'] = 'True' # This is used so fp.options.set('jupyter') doesn't reset the Matplotlib renderer os.environ['FPSIM_WARNINGS'] = 'error' # Don't let warnings pass in the tutorials on_rtd = os.environ.get('READTHEDOCS') == 'True' # -- Project information ----------------------------------------------------- project = 'FPsim' copyright = f'2019 - {sc.now().year}, Bill & Melinda Gates Foundation. All rights reserved.\nThese docs were built for FPsim version {fp.__version__}\n' author = 'Institute for Disease Modeling' # The short X.Y version version = fp.__version__ # The full version, including alpha/beta/rc tags release = fp.__version__ # -- General configuration --------------------------------------------------- # Add any Sphinx extension module names here extensions = [ "sphinx.ext.autodoc", # Core Sphinx library for auto html doc generation from docstrings "sphinx.ext.autosummary", # Create neat summary tables for modules/classes/methods etc -- causes warnings with Napoleon however "sphinx.ext.intersphinx", "sphinx.ext.viewcode", # Add a link to the Python source code for classes, functions etc. "sphinx.ext.napoleon", "sphinx.ext.autosectionlabel", "sphinx_autodoc_typehints", # Automatically document param types (less noise in class signature) "sphinx_design", # Add e.g. grid layout 'sphinx_search.extension', # search across multiple docsets in domain "nbsphinx", ] # Use Google docstrings napoleon_google_docstring = True # Configure autosummary autosummary_generate = True # Turn on sphinx.ext.autosummary autosummary_ignore_module_all = False # Respect __all__ autodoc_member_order = 'bysource' # Keep original ordering add_module_names = False # NB, does not work autodoc_inherit_docstrings = False # Stops sublcasses from including docs from parent classes # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] # Syntax highlighting style pygments_style = "sphinx" modindex_common_prefix = ["fpsim."] # List of patterns, relative to source directory, to exclude exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"] # Suppress certain warnings suppress_warnings = ['autosectionlabel.*'] # -- Options for HTML output ------------------------------------------------- html_theme = "pydata_sphinx_theme" html_theme_options = { "collapse_navigation": False, "navigation_depth": 3, "show_prev_next": True, "icon_links": [ {"name": "Web", "url": "https://fpsim.org", "icon": "fas fa-home"}, { "name": "GitHub", "url": "https://github.com/fpsim/fpsim", "icon": "fab fa-github-square", }, ], "navbar_end": ["theme-switcher", "navbar-icon-links"], "secondary_sidebar_items": ["navbar-side"], "header_links_before_dropdown": 5, "footer_start": ["copyright", "footer_start"], "footer_end": ["theme-version", "footer_end"], } html_sidebars = { "**": ["sidebar-nav-bs", "page-toc"], } html_logo = "images/idm-logo-transparent.png" html_favicon = "images/favicon.ico" html_static_path = ['_static'] html_baseurl = "https://docs.idmod.org/projects/fpsim/en/latest" html_context = { 'rtd_url': 'https://docs.idmod.org/projects/fpsim/en/latest', "versions_dropdown": { "latest": "devel (latest)", "stable": "current (stable)", }, "default_mode": "light", } # Add any extra paths that contain custom files if not on_rtd: html_extra_path = ['robots.txt'] # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. html_last_updated_fmt = '%Y-%b-%d' html_show_sourcelink = True html_show_sphinx = False html_copy_source = False htmlhelp_basename = 'FPsim' # Add customizations def setup(app): app.add_css_file("theme_overrides.css") # Modify this to not rerun the Jupyter notebook cells -- usually set by build_docs nb_ex_default = ['auto', 'never'][0] nb_ex = os.getenv('NBSPHINX_EXECUTE') if not nb_ex: nb_ex = nb_ex_default print(f'\n\nBuilding Jupyter notebooks with build option: {nb_ex}\n\n') nbsphinx_execute = nb_ex # OpenSearch options html_use_opensearch = 'docs.idmod.org/projects/fpsim/en/latest' # -- RTD Sphinx search for searching across the entire domain, default child ------------- if os.environ.get('READTHEDOCS') == 'True': search_project_parent = "institute-for-disease-modeling-idm" search_project = os.environ["READTHEDOCS_PROJECT"] search_version = os.environ["READTHEDOCS_VERSION"] rtd_sphinx_search_default_filter = f"subprojects:{search_project}/{search_version}" rtd_sphinx_search_filters = { "Search this project": f"project:{search_project}/{search_version}", "Search all IDM docs": f"subprojects:{search_project_parent}/{search_version}", } ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Define this variable in case it's not defined by the user. # It defaults to `alabaster` which is the default from Sphinx. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_theme html_theme = globals().get('html_theme', 'alabaster') #Add project information to the template context. context = { 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v0.28.1", "/en/v0.28.1/"), ("v0.24.0", "/en/v0.24.0/"), ("v0.23.0", "/en/v0.23.0/"), ("v0.22.1", "/en/v0.22.1/"), ("v0.22.0", "/en/v0.22.0/"), ("v0.19.2", "/en/v0.19.2/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-fpsim', 'name': u'fpsim', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': '', 'analytics_code': 'None', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'fpsim', 'proxied_api_host': '/_', 'github_repo': 'fpsim', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': '', 'global_analytics_code': 'UA-17997319-2', 'commit': '25d50477', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-fpsim/builds/2239402/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2024-05-24T21:08:35.954692Z, end-time: 2024-05-24T21:09:53.098885Z, duration: 77, exit-code: 0 python -m sphinx -T -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v7.3.7 Building Jupyter notebooks with build option: auto making output directory... done [autosummary] generating autosummary for: api/index.rst, index.rst, overview.rst, tutorials.rst, tutorials/README.rst, tutorials/T1_intro.ipynb, tutorials/T2_scenarios.ipynb, tutorials/T3_scenarios_plotting.ipynb, tutorials/T4_subnational.ipynb, whatsnew.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.analyzers.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.base.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.calibration.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.defaults.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.experiment.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.interventions.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.locations.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.parameters.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.scenarios.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.settings.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.sim.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.rst [autosummary] generating autosummary for: /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.analyzers.Analyzer.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.analyzers.age_pyramids.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.analyzers.education_recorder.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.analyzers.empowerment_recorder.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.analyzers.snapshot.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.base.BasePeople.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.base.BaseSim.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.base.ParsObj.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.base.ndict.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.calibration.Calibration.rst, ..., /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.sim.Sim.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.sim.parallel.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.DuplicateNameException.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.bc.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.bt.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.match_ages.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.mt.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.rbt.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.sample.rst, /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/api/_autosummary/fpsim.utils.set_seed.rst The default value for `navigation_with_keys` will change to `False` in the next release. If you wish to preserve the old behavior for your site, set `navigation_with_keys=True` in the `html_theme_options` dict in your `conf.py` file. Be aware that `navigation_with_keys = True` has negative accessibility implications: https://github.com/pydata/pydata-sphinx-theme/issues/1492 building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 10 source files that are out of date updating environment: [new config] 56 added, 0 changed, 0 removed reading sources... [ 2%] api/_autosummary/fpsim.analyzers reading sources... [ 4%] api/_autosummary/fpsim.analyzers.Analyzer reading sources... [ 5%] api/_autosummary/fpsim.analyzers.age_pyramids reading sources... [ 7%] api/_autosummary/fpsim.analyzers.education_recorder reading sources... [ 9%] api/_autosummary/fpsim.analyzers.empowerment_recorder reading sources... [ 11%] api/_autosummary/fpsim.analyzers.snapshot reading sources... [ 12%] api/_autosummary/fpsim.base reading sources... [ 14%] api/_autosummary/fpsim.base.BasePeople reading sources... [ 16%] api/_autosummary/fpsim.base.BaseSim reading sources... [ 18%] api/_autosummary/fpsim.base.ParsObj reading sources... [ 20%] api/_autosummary/fpsim.base.ndict reading sources... [ 21%] api/_autosummary/fpsim.calibration reading sources... [ 23%] api/_autosummary/fpsim.calibration.Calibration reading sources... [ 25%] api/_autosummary/fpsim.defaults reading sources... [ 27%] api/_autosummary/fpsim.defaults.State reading sources... [ 29%] api/_autosummary/fpsim.experiment reading sources... [ 30%] api/_autosummary/fpsim.experiment.Experiment reading sources... [ 32%] api/_autosummary/fpsim.experiment.Fit reading sources... [ 34%] api/_autosummary/fpsim.experiment.compute_gof reading sources... [ 36%] api/_autosummary/fpsim.experiment.diff_summaries reading sources... [ 38%] api/_autosummary/fpsim.interventions reading sources... [ 39%] api/_autosummary/fpsim.interventions.Intervention reading sources... [ 41%] api/_autosummary/fpsim.interventions.change_par reading sources... [ 43%] api/_autosummary/fpsim.interventions.update_methods reading sources... [ 45%] api/_autosummary/fpsim.locations reading sources... [ 46%] api/_autosummary/fpsim.parameters reading sources... [ 48%] api/_autosummary/fpsim.parameters.Pars reading sources... [ 50%] api/_autosummary/fpsim.parameters.pars reading sources... [ 52%] api/_autosummary/fpsim.scenarios reading sources... [ 54%] api/_autosummary/fpsim.scenarios.Scenario reading sources... [ 55%] api/_autosummary/fpsim.scenarios.Scenarios reading sources... [ 57%] api/_autosummary/fpsim.scenarios.make_scen reading sources... [ 59%] api/_autosummary/fpsim.settings reading sources... [ 61%] api/_autosummary/fpsim.sim reading sources... [ 62%] api/_autosummary/fpsim.sim.MultiSim reading sources... [ 64%] api/_autosummary/fpsim.sim.Sim reading sources... [ 66%] api/_autosummary/fpsim.sim.parallel reading sources... [ 68%] api/_autosummary/fpsim.utils reading sources... [ 70%] api/_autosummary/fpsim.utils.DuplicateNameException reading sources... [ 71%] api/_autosummary/fpsim.utils.bc reading sources... [ 73%] api/_autosummary/fpsim.utils.bt reading sources... [ 75%] api/_autosummary/fpsim.utils.match_ages reading sources... [ 77%] api/_autosummary/fpsim.utils.mt reading sources... [ 79%] api/_autosummary/fpsim.utils.rbt reading sources... [ 80%] api/_autosummary/fpsim.utils.sample reading sources... [ 82%] api/_autosummary/fpsim.utils.set_seed reading sources... [ 84%] api/index reading sources... [ 86%] index reading sources... [ 88%] overview reading sources... [ 89%] tutorials reading sources... [ 91%] tutorials/README reading sources... [ 93%] tutorials/T1_intro /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages/jupyter_client/localinterfaces.py:56: UserWarning: Unexpected error discovering local network interfaces: encoding with 'idna' codec failed (UnicodeError: label too long) ret = f(**kwargs) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages/jupyter_client/localinterfaces.py:56: UserWarning: Unexpected error discovering local network interfaces: encoding with 'idna' codec failed (UnicodeError: label too long) ret = f(**kwargs) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages/nbsphinx/__init__.py:1058: RuntimeWarning: You are using an unsupported version of pandoc (2.5). Your version must be at least (2.14.2) but less than (4.0.0). Refer to https://pandoc.org/installing.html. Continuing with doubts... nbconvert.utils.pandoc.check_pandoc_version() reading sources... [ 95%] tutorials/T2_scenarios reading sources... [ 96%] tutorials/T3_scenarios_plotting reading sources... [ 98%] tutorials/T4_subnational reading sources... [100%] whatsnew WARNING: error while formatting signature for fpsim.utils.bc: 'CPUDispatcher' object has no attribute '__mro__' WARNING: error while formatting signature for fpsim.utils.bt: 'CPUDispatcher' object has no attribute '__mro__' WARNING: error while formatting signature for fpsim.utils.match_ages: 'CPUDispatcher' object has no attribute '__mro__' WARNING: error while formatting signature for fpsim.utils.mt: 'CPUDispatcher' object has no attribute '__mro__' WARNING: error while formatting signature for fpsim.utils.rbt: 'CPUDispatcher' object has no attribute '__mro__' ../CHANGELOG.rst:12: WARNING: Title underline too short. Version 0.28.3 (2024-04-30) -------------------------- ../CHANGELOG.rst:15: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/334>". ../CHANGELOG.rst:21: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/316>". ../CHANGELOG.rst:27: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/319>". ../CHANGELOG.rst:33: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/241>". looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/T4_subnational.ipynb: WARNING: document isn't included in any toctree done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 2%] api/_autosummary/fpsim.analyzers writing output... [ 4%] api/_autosummary/fpsim.analyzers.Analyzer writing output... 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