Read the Docs build information
Build id: 2133466
Project: icb-scanpy
Version: 2980
Commit: a5eca04da6554dd62d40e7223ac25117a2c4ce54
Date: 2024-04-05T10:41:21.824929Z
State: cancelled
Success: False


[rtd-command-info] start-time: 2024-04-05T10:41:22.948221Z, end-time: 2024-04-05T10:41:24.853527Z, duration: 1, exit-code: 0
git clone --depth 1 https://github.com/scverse/scanpy.git .
Cloning into '.'...

[rtd-command-info] start-time: 2024-04-05T10:41:24.926399Z, end-time: 2024-04-05T10:41:27.077508Z, duration: 2, exit-code: 0
git fetch origin --force --prune --prune-tags --depth 50 pull/2980/head:external-2980
From https://github.com/scverse/scanpy
 * [new ref]         refs/pull/2980/head -> external-2980
 * [new tag]         1.10.0rc1           -> 1.10.0rc1

[rtd-command-info] start-time: 2024-04-05T10:41:27.219080Z, end-time: 2024-04-05T10:41:27.429968Z, duration: 0, exit-code: 0
git checkout --force a5eca04da6554dd62d40e7223ac25117a2c4ce54
Note: switching to 'a5eca04da6554dd62d40e7223ac25117a2c4ce54'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at a5eca04 some draft changes & comments

[rtd-command-info] start-time: 2024-04-05T10:41:27.487348Z, end-time: 2024-04-05T10:41:27.548999Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2024-04-05T10:41:27.613199Z, end-time: 2024-04-05T10:41:27.670953Z, duration: 0, exit-code: 0
cat .readthedocs.yml
version: 2
submodules:
  include: all
build:
  os: ubuntu-20.04
  tools:
    python: '3.12'
sphinx:
  fail_on_warning: true # do not change or you will be fired
  configuration: docs/conf.py
python:
  install:
  - method: pip
    path: .
    extra_requirements:
    - doc
    - leiden

[rtd-command-info] start-time: 2024-04-05T10:41:27.804882Z, end-time: 2024-04-05T10:41:27.875635Z, duration: 0, exit-code: 0
git submodule sync


[rtd-command-info] start-time: 2024-04-05T10:41:27.956367Z, end-time: 2024-04-05T10:41:46.232554Z, duration: 18, exit-code: 0
git submodule update --init --force --
Submodule 'notebooks' (https://github.com/scverse/scanpy-tutorials/) registered for path 'notebooks'
Cloning into '/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/checkouts/2980/notebooks'...
Submodule path 'notebooks': checked out '22cc7cf46139cc8bdc2a1c7e4ec37254c8aa50ae'

[rtd-command-info] start-time: 2024-04-05T10:41:52.920671Z, end-time: 2024-04-05T10:41:53.004148Z, duration: 0, exit-code: 0
asdf global python 3.12.0


[rtd-command-info] start-time: 2024-04-05T10:41:53.421434Z, end-time: 2024-04-05T10:41:54.546561Z, duration: 1, exit-code: 0
python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
created virtual environment CPython3.12.0.final.0-64 in 801ms
  creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2980, clear=False, no_vcs_ignore=False, global=False)
  seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv)
    added seed packages: pip==23.1, setuptools==67.6.1, wheel==0.40.0
  activators BashActivator,CShellActivator,FishActivator,NushellActivator,PowerShellActivator,PythonActivator

[rtd-command-info] start-time: 2024-04-05T10:41:54.609118Z, end-time: 2024-04-05T10:42:08.937061Z, duration: 14, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools
Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2980/lib/python3.12/site-packages (23.1)
Collecting pip
  Downloading pip-24.0-py3-none-any.whl (2.1 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 48.7 MB/s eta 0:00:00
Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/icb-scanpy/envs/2980/lib/python3.12/site-packages (67.6.1)
Collecting setuptools
  Downloading setuptools-69.2.0-py3-none-any.whl (821 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 821.5/821.5 kB 167.1 MB/s eta 0:00:00
Installing collected packages: setuptools, pip
  Attempting uninstall: setuptools
    Found existing installation: setuptools 67.6.1
    Uninstalling setuptools-67.6.1:
      Successfully uninstalled setuptools-67.6.1
  Attempting uninstall: pip
    Found existing installation: pip 23.1
    Uninstalling pip-23.1:
      Successfully uninstalled pip-23.1
Successfully installed pip-24.0 setuptools-69.2.0