Read the Docs build information Build id: 1762110 Project: institute-for-disease-modeling-fpsim Version: latest Commit: 2e4a30e49573929a2429d12cb8061d7f787dfec4 Date: 2023-10-04T22:07:58.270172Z State: finished Success: True [rtd-command-info] start-time: 2023-10-04T22:08:23.306465Z, end-time: 2023-10-04T22:08:23.968058Z, duration: 0, exit-code: 0 git clone --depth 1 https://github.com/fpsim/fpsim.git . Cloning into '.'... [rtd-command-info] start-time: 2023-10-04T22:08:24.387818Z, end-time: 2023-10-04T22:08:26.189376Z, duration: 1, exit-code: 0 git fetch origin --force --prune --prune-tags --depth 50 refs/heads/main:refs/remotes/origin/main From https://github.com/fpsim/fpsim * [new tag] v0.19.2 -> v0.19.2 * [new tag] v0.22.0 -> v0.22.0 * [new tag] v0.22.1 -> v0.22.1 * [new tag] v0.23.0 -> v0.23.0 * [new tag] v0.24.0 -> v0.24.0 [rtd-command-info] start-time: 2023-10-04T22:08:26.706932Z, end-time: 2023-10-04T22:08:26.788766Z, duration: 0, exit-code: 0 git checkout --force origin/main Note: switching to 'origin/main'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 2e4a30e Add table for probability of stopping education with pregnancy [rtd-command-info] start-time: 2023-10-04T22:08:27.263641Z, end-time: 2023-10-04T22:08:27.326396Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-10-04T22:08:27.784898Z, end-time: 2023-10-04T22:08:27.841266Z, duration: 0, exit-code: 0 cat .readthedocs.yaml # .readthedocs.yaml # Read the Docs configuration file # See https://docs.readthedocs.io/en/stable/config-file/v2.html for details # Required version: 2 # Set the version of Python and other tools you might need build: os: ubuntu-20.04 tools: python: "3.9" # Build documentation in the docs/ directory with Sphinx sphinx: configuration: docs/conf.py # If using Sphinx, optionally build your docs in additional formats such as PDF # formats: # Optionally declare the Python requirements required to build your docs python: install: - requirements: docs/requirements.txt - method: pip path: . [rtd-command-info] start-time: 2023-10-04T22:08:34.889135Z, end-time: 2023-10-04T22:08:34.965626Z, duration: 0, exit-code: 0 asdf global python 3.9.17 [rtd-command-info] start-time: 2023-10-04T22:08:35.892733Z, end-time: 2023-10-04T22:08:36.899103Z, duration: 1, exit-code: 0 python -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH created virtual environment CPython3.9.17.final.0-64 in 689ms creator CPython3Posix(dest=/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest, clear=False, no_vcs_ignore=False, global=False) seeder FromAppData(download=False, pip=bundle, setuptools=bundle, wheel=bundle, via=copy, app_data_dir=/home/docs/.local/share/virtualenv) added seed packages: pip==21.2.3, setuptools==57.4.0, wheel==0.37.0 activators BashActivator,CShellActivator,FishActivator,PowerShellActivator,PythonActivator [rtd-command-info] start-time: 2023-10-04T22:08:37.585301Z, end-time: 2023-10-04T22:08:47.283245Z, duration: 9, exit-code: 0 python -m pip install --upgrade --no-cache-dir pip setuptools Requirement already satisfied: pip in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (21.2.3) Collecting pip Downloading pip-23.2.1-py3-none-any.whl (2.1 MB) Requirement already satisfied: setuptools in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (57.4.0) Collecting setuptools Downloading setuptools-68.2.2-py3-none-any.whl (807 kB) Installing collected packages: setuptools, pip Attempting uninstall: setuptools Found existing installation: setuptools 57.4.0 Uninstalling setuptools-57.4.0: Successfully uninstalled setuptools-57.4.0 Attempting uninstall: pip Found existing installation: pip 21.2.3 Uninstalling pip-21.2.3: Successfully uninstalled pip-21.2.3 Successfully installed pip-23.2.1 setuptools-68.2.2 [rtd-command-info] start-time: 2023-10-04T22:08:47.770292Z, end-time: 2023-10-04T22:08:55.879209Z, duration: 8, exit-code: 0 python -m pip install --upgrade --no-cache-dir sphinx readthedocs-sphinx-ext Collecting sphinx Obtaining dependency information for sphinx from https://files.pythonhosted.org/packages/b2/b6/8ed35256aa530a9d3da15d20bdc0ba888d5364441bb50a5a83ee7827affe/sphinx-7.2.6-py3-none-any.whl.metadata Downloading sphinx-7.2.6-py3-none-any.whl.metadata (5.9 kB) Collecting readthedocs-sphinx-ext Obtaining dependency information for readthedocs-sphinx-ext from https://files.pythonhosted.org/packages/e3/bb/4adf12e9f4f6884135ccd662fdc0dd1008e73ea9be3c1a981ce0208467f7/readthedocs_sphinx_ext-2.2.3-py2.py3-none-any.whl.metadata Downloading readthedocs_sphinx_ext-2.2.3-py2.py3-none-any.whl.metadata (1.5 kB) Collecting sphinxcontrib-applehelp (from sphinx) Obtaining dependency information for sphinxcontrib-applehelp from https://files.pythonhosted.org/packages/c0/0c/261c0949083c0ac635853528bb0070c89e927841d4e533ba0b5563365c06/sphinxcontrib_applehelp-1.0.7-py3-none-any.whl.metadata Downloading sphinxcontrib_applehelp-1.0.7-py3-none-any.whl.metadata (2.2 kB) Collecting sphinxcontrib-devhelp (from sphinx) Obtaining dependency information for sphinxcontrib-devhelp from https://files.pythonhosted.org/packages/c0/03/010ac733ec7b7f71c1dc88e7115743ee466560d6d85373b56fb9916e4586/sphinxcontrib_devhelp-1.0.5-py3-none-any.whl.metadata Downloading sphinxcontrib_devhelp-1.0.5-py3-none-any.whl.metadata (2.2 kB) Collecting sphinxcontrib-jsmath (from sphinx) Downloading sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx) Obtaining dependency information for sphinxcontrib-htmlhelp>=2.0.0 from https://files.pythonhosted.org/packages/28/7a/958f8e3e6abe8219d0d1f1224886de847ab227b218f4a07b61bc337f64be/sphinxcontrib_htmlhelp-2.0.4-py3-none-any.whl.metadata Downloading sphinxcontrib_htmlhelp-2.0.4-py3-none-any.whl.metadata (2.2 kB) Collecting sphinxcontrib-serializinghtml>=1.1.9 (from sphinx) Obtaining dependency information for sphinxcontrib-serializinghtml>=1.1.9 from https://files.pythonhosted.org/packages/95/d6/2e0bda62b2a808070ac922d21a950aa2cb5e4fcfb87e5ff5f86bc43a2201/sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl.metadata Downloading sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl.metadata (2.3 kB) Collecting sphinxcontrib-qthelp (from sphinx) Obtaining dependency information for sphinxcontrib-qthelp from https://files.pythonhosted.org/packages/1f/e5/1850f3f118e95581c1e30b57028ac979badee1eb29e70ee72b0241f5a185/sphinxcontrib_qthelp-1.0.6-py3-none-any.whl.metadata Downloading sphinxcontrib_qthelp-1.0.6-py3-none-any.whl.metadata (2.2 kB) Collecting Jinja2>=3.0 (from sphinx) Downloading Jinja2-3.1.2-py3-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.1/133.1 kB 8.1 MB/s eta 0:00:00 Collecting Pygments>=2.14 (from sphinx) Obtaining dependency information for Pygments>=2.14 from https://files.pythonhosted.org/packages/43/88/29adf0b44ba6ac85045e63734ae0997d3c58d8b1a91c914d240828d0d73d/Pygments-2.16.1-py3-none-any.whl.metadata Downloading Pygments-2.16.1-py3-none-any.whl.metadata (2.5 kB) Collecting docutils<0.21,>=0.18.1 (from sphinx) Obtaining dependency information for docutils<0.21,>=0.18.1 from https://files.pythonhosted.org/packages/26/87/f238c0670b94533ac0353a4e2a1a771a0cc73277b88bff23d3ae35a256c1/docutils-0.20.1-py3-none-any.whl.metadata Downloading docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB) Collecting snowballstemmer>=2.0 (from sphinx) Downloading snowballstemmer-2.2.0-py2.py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.0/93.0 kB 132.9 MB/s eta 0:00:00 Collecting babel>=2.9 (from sphinx) Obtaining dependency information for babel>=2.9 from https://files.pythonhosted.org/packages/ff/37/b0241795c3a320a3def948cd0d06daf70310e7fea1d8fda312629bc22ea9/Babel-2.13.0-py3-none-any.whl.metadata Downloading Babel-2.13.0-py3-none-any.whl.metadata (1.6 kB) Collecting alabaster<0.8,>=0.7 (from sphinx) Downloading alabaster-0.7.13-py3-none-any.whl (13 kB) Collecting imagesize>=1.3 (from sphinx) Downloading imagesize-1.4.1-py2.py3-none-any.whl (8.8 kB) Collecting requests>=2.25.0 (from sphinx) Obtaining dependency information for requests>=2.25.0 from https://files.pythonhosted.org/packages/70/8e/0e2d847013cb52cd35b38c009bb167a1a26b2ce6cd6965bf26b47bc0bf44/requests-2.31.0-py3-none-any.whl.metadata Downloading requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting packaging>=21.0 (from sphinx) Obtaining dependency information for packaging>=21.0 from https://files.pythonhosted.org/packages/ec/1a/610693ac4ee14fcdf2d9bf3c493370e4f2ef7ae2e19217d7a237ff42367d/packaging-23.2-py3-none-any.whl.metadata Downloading packaging-23.2-py3-none-any.whl.metadata (3.2 kB) Collecting importlib-metadata>=4.8 (from sphinx) Obtaining dependency information for importlib-metadata>=4.8 from https://files.pythonhosted.org/packages/cc/37/db7ba97e676af155f5fcb1a35466f446eadc9104e25b83366e8088c9c926/importlib_metadata-6.8.0-py3-none-any.whl.metadata Downloading importlib_metadata-6.8.0-py3-none-any.whl.metadata (5.1 kB) Collecting zipp>=0.5 (from importlib-metadata>=4.8->sphinx) Obtaining dependency information for zipp>=0.5 from https://files.pythonhosted.org/packages/d9/66/48866fc6b158c81cc2bfecc04c480f105c6040e8b077bc54c634b4a67926/zipp-3.17.0-py3-none-any.whl.metadata Downloading zipp-3.17.0-py3-none-any.whl.metadata (3.7 kB) Collecting MarkupSafe>=2.0 (from Jinja2>=3.0->sphinx) Obtaining dependency information for MarkupSafe>=2.0 from https://files.pythonhosted.org/packages/de/63/cb7e71984e9159ec5f45b5e81e896c8bdd0e45fe3fc6ce02ab497f0d790e/MarkupSafe-2.1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading MarkupSafe-2.1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Collecting charset-normalizer<4,>=2 (from requests>=2.25.0->sphinx) Obtaining dependency information for charset-normalizer<4,>=2 from https://files.pythonhosted.org/packages/9e/45/824835a9c165eae015eb7b4a875a581918b9fc96439f8d9a5ca0868f0b7d/charset_normalizer-3.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading charset_normalizer-3.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (32 kB) Collecting idna<4,>=2.5 (from requests>=2.25.0->sphinx) Downloading idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 126.5 MB/s eta 0:00:00 Collecting urllib3<3,>=1.21.1 (from requests>=2.25.0->sphinx) Obtaining dependency information for urllib3<3,>=1.21.1 from https://files.pythonhosted.org/packages/26/40/9957270221b6d3e9a3b92fdfba80dd5c9661ff45a664b47edd5d00f707f5/urllib3-2.0.6-py3-none-any.whl.metadata Downloading urllib3-2.0.6-py3-none-any.whl.metadata (6.6 kB) Collecting certifi>=2017.4.17 (from requests>=2.25.0->sphinx) Obtaining dependency information for certifi>=2017.4.17 from https://files.pythonhosted.org/packages/4c/dd/2234eab22353ffc7d94e8d13177aaa050113286e93e7b40eae01fbf7c3d9/certifi-2023.7.22-py3-none-any.whl.metadata Downloading certifi-2023.7.22-py3-none-any.whl.metadata (2.2 kB) Downloading sphinx-7.2.6-py3-none-any.whl (3.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 78.4 MB/s eta 0:00:00 Downloading readthedocs_sphinx_ext-2.2.3-py2.py3-none-any.whl (11 kB) Downloading Babel-2.13.0-py3-none-any.whl (10.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.1/10.1 MB 139.3 MB/s eta 0:00:00 Downloading docutils-0.20.1-py3-none-any.whl (572 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 572.7/572.7 kB 151.5 MB/s eta 0:00:00 Downloading importlib_metadata-6.8.0-py3-none-any.whl (22 kB) Downloading packaging-23.2-py3-none-any.whl (53 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 53.0/53.0 kB 123.8 MB/s eta 0:00:00 Downloading Pygments-2.16.1-py3-none-any.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 152.9 MB/s eta 0:00:00 Downloading requests-2.31.0-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.6/62.6 kB 121.0 MB/s eta 0:00:00 Downloading sphinxcontrib_htmlhelp-2.0.4-py3-none-any.whl (99 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 99.2/99.2 kB 137.9 MB/s eta 0:00:00 Downloading sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl (92 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 92.7/92.7 kB 134.9 MB/s eta 0:00:00 Downloading sphinxcontrib_applehelp-1.0.7-py3-none-any.whl (120 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 120.0/120.0 kB 140.2 MB/s eta 0:00:00 Downloading sphinxcontrib_devhelp-1.0.5-py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.5/83.5 kB 131.3 MB/s eta 0:00:00 Downloading sphinxcontrib_qthelp-1.0.6-py3-none-any.whl (89 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.4/89.4 kB 128.2 MB/s eta 0:00:00 Downloading certifi-2023.7.22-py3-none-any.whl (158 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 158.3/158.3 kB 145.7 MB/s eta 0:00:00 Downloading charset_normalizer-3.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (138 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 139.0/139.0 kB 140.6 MB/s eta 0:00:00 Downloading MarkupSafe-2.1.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Downloading urllib3-2.0.6-py3-none-any.whl (123 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 123.8/123.8 kB 133.9 MB/s eta 0:00:00 Downloading zipp-3.17.0-py3-none-any.whl (7.4 kB) Installing collected packages: snowballstemmer, zipp, urllib3, sphinxcontrib-jsmath, Pygments, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, requests, Jinja2, importlib-metadata, readthedocs-sphinx-ext, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, sphinx Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.3 Pygments-2.16.1 alabaster-0.7.13 babel-2.13.0 certifi-2023.7.22 charset-normalizer-3.3.0 docutils-0.20.1 idna-3.4 imagesize-1.4.1 importlib-metadata-6.8.0 packaging-23.2 readthedocs-sphinx-ext-2.2.3 requests-2.31.0 snowballstemmer-2.2.0 sphinx-7.2.6 sphinxcontrib-applehelp-1.0.7 sphinxcontrib-devhelp-1.0.5 sphinxcontrib-htmlhelp-2.0.4 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.6 sphinxcontrib-serializinghtml-1.1.9 urllib3-2.0.6 zipp-3.17.0 [rtd-command-info] start-time: 2023-10-04T22:08:56.328982Z, end-time: 2023-10-04T22:09:16.761897Z, duration: 20, exit-code: 0 python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt Collecting pytest (from -r docs/requirements.txt (line 1)) Obtaining dependency information for pytest from https://files.pythonhosted.org/packages/df/d0/e192c4275aecabf74faa1aacd75ef700091913236ec78b1a98f62a2412ee/pytest-7.4.2-py3-none-any.whl.metadata Downloading pytest-7.4.2-py3-none-any.whl.metadata (7.9 kB) Collecting sphinx-rtd-theme (from -r docs/requirements.txt (line 2)) Obtaining dependency information for sphinx-rtd-theme from https://files.pythonhosted.org/packages/18/01/76f40a18e9209bb098c1c1313c823dbbd001b23a2db71e7fd4eb5a48559c/sphinx_rtd_theme-1.3.0-py2.py3-none-any.whl.metadata Downloading sphinx_rtd_theme-1.3.0-py2.py3-none-any.whl.metadata (4.5 kB) Collecting sphinxcontrib-napoleon (from -r docs/requirements.txt (line 3)) Downloading sphinxcontrib_napoleon-0.7-py2.py3-none-any.whl (17 kB) Requirement already satisfied: sphinx in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from -r docs/requirements.txt (line 4)) (7.2.6) Collecting ipykernel (from -r docs/requirements.txt (line 5)) Obtaining dependency information for ipykernel from https://files.pythonhosted.org/packages/94/e3/70fb6e6bdd42cb0586d6b6680713997d2a9dc46642aec207ca04d0df80b8/ipykernel-6.25.2-py3-none-any.whl.metadata Downloading ipykernel-6.25.2-py3-none-any.whl.metadata (6.3 kB) Collecting nbsphinx (from -r docs/requirements.txt (line 6)) Obtaining dependency information for nbsphinx from https://files.pythonhosted.org/packages/a3/a0/ca4aeb2f7f2608a483459a3bb486da250a7eb23eb76c9a0af154395f0cb2/nbsphinx-0.9.3-py3-none-any.whl.metadata Downloading nbsphinx-0.9.3-py3-none-any.whl.metadata (2.1 kB) Collecting pandoc (from -r docs/requirements.txt (line 7)) Downloading pandoc-2.3.tar.gz (33 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pypandoc (from -r docs/requirements.txt (line 8)) Downloading pypandoc-1.11-py3-none-any.whl (20 kB) Collecting optuna (from -r docs/requirements.txt (line 9)) Obtaining dependency information for optuna from https://files.pythonhosted.org/packages/69/60/87a06ef66b34cbe2f2eb0ab66f003664404a7f40c21403a69fad7e28a82b/optuna-3.3.0-py3-none-any.whl.metadata Downloading optuna-3.3.0-py3-none-any.whl.metadata (17 kB) Collecting iniconfig (from pytest->-r docs/requirements.txt (line 1)) Downloading iniconfig-2.0.0-py3-none-any.whl (5.9 kB) Requirement already satisfied: packaging in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from pytest->-r docs/requirements.txt (line 1)) (23.2) Collecting pluggy<2.0,>=0.12 (from pytest->-r docs/requirements.txt (line 1)) Obtaining dependency information for pluggy<2.0,>=0.12 from https://files.pythonhosted.org/packages/05/b8/42ed91898d4784546c5f06c60506400548db3f7a4b3fb441cba4e5c17952/pluggy-1.3.0-py3-none-any.whl.metadata Downloading pluggy-1.3.0-py3-none-any.whl.metadata (4.3 kB) Collecting exceptiongroup>=1.0.0rc8 (from pytest->-r docs/requirements.txt (line 1)) Obtaining dependency information for exceptiongroup>=1.0.0rc8 from https://files.pythonhosted.org/packages/ad/83/b71e58666f156a39fb29417e4c8ca4bc7400c0dd4ed9e8842ab54dc8c344/exceptiongroup-1.1.3-py3-none-any.whl.metadata Downloading exceptiongroup-1.1.3-py3-none-any.whl.metadata (6.1 kB) Collecting tomli>=1.0.0 (from pytest->-r docs/requirements.txt (line 1)) Downloading tomli-2.0.1-py3-none-any.whl (12 kB) Collecting docutils<0.19 (from sphinx-rtd-theme->-r docs/requirements.txt (line 2)) Downloading docutils-0.18.1-py2.py3-none-any.whl (570 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 570.0/570.0 kB 32.9 MB/s eta 0:00:00 Collecting sphinxcontrib-jquery<5,>=4 (from sphinx-rtd-theme->-r docs/requirements.txt (line 2)) Downloading sphinxcontrib_jquery-4.1-py2.py3-none-any.whl (121 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.1/121.1 kB 234.8 MB/s eta 0:00:00 Collecting six>=1.5.2 (from sphinxcontrib-napoleon->-r docs/requirements.txt (line 3)) Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting pockets>=0.3 (from sphinxcontrib-napoleon->-r docs/requirements.txt (line 3)) Downloading pockets-0.9.1-py2.py3-none-any.whl (26 kB) Requirement already satisfied: sphinxcontrib-applehelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (1.0.7) Requirement already satisfied: sphinxcontrib-devhelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (1.0.5) Requirement already satisfied: sphinxcontrib-jsmath in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (1.0.1) Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (2.0.4) Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (1.1.9) Requirement already satisfied: sphinxcontrib-qthelp in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (1.0.6) Requirement already satisfied: Jinja2>=3.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (3.1.2) Requirement already satisfied: Pygments>=2.14 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (2.16.1) Requirement already satisfied: snowballstemmer>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (2.2.0) Requirement already satisfied: babel>=2.9 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (2.13.0) Requirement already satisfied: alabaster<0.8,>=0.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (0.7.13) Requirement already satisfied: imagesize>=1.3 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (1.4.1) Requirement already satisfied: requests>=2.25.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (2.31.0) Requirement already satisfied: importlib-metadata>=4.8 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sphinx->-r docs/requirements.txt (line 4)) (6.8.0) Collecting comm>=0.1.1 (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for comm>=0.1.1 from https://files.pythonhosted.org/packages/fe/47/0133ac1b7dc476ed77710715e98077119b3d9bae56b13f6f9055e7da1c53/comm-0.1.4-py3-none-any.whl.metadata Downloading comm-0.1.4-py3-none-any.whl.metadata (4.2 kB) Collecting debugpy>=1.6.5 (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for debugpy>=1.6.5 from https://files.pythonhosted.org/packages/f7/79/6053a14f60e879b8cb1a42dadbbef8822603eadde79944c61e955309b622/debugpy-1.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading debugpy-1.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.0 kB) Collecting ipython>=7.23.1 (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for ipython>=7.23.1 from https://files.pythonhosted.org/packages/ef/02/fc039fca3ec40a00f962eb6e9da45c507334b0650a3cb9facd38d234fb7a/ipython-8.16.1-py3-none-any.whl.metadata Downloading ipython-8.16.1-py3-none-any.whl.metadata (5.9 kB) Collecting jupyter-client>=6.1.12 (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for jupyter-client>=6.1.12 from https://files.pythonhosted.org/packages/73/d4/3c13d6a300be9e894561aea0b81e7aed46e8f98029b7d9369d90b1fc7ac5/jupyter_client-8.3.1-py3-none-any.whl.metadata Downloading jupyter_client-8.3.1-py3-none-any.whl.metadata (8.5 kB) Collecting jupyter-core!=5.0.*,>=4.12 (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for jupyter-core!=5.0.*,>=4.12 from https://files.pythonhosted.org/packages/bf/70/7b8dbda173b97be0ad40c5eb673bb1901cfeac29554d30cf9df49e59a694/jupyter_core-5.3.2-py3-none-any.whl.metadata Downloading jupyter_core-5.3.2-py3-none-any.whl.metadata (3.4 kB) Collecting matplotlib-inline>=0.1 (from ipykernel->-r docs/requirements.txt (line 5)) Downloading matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) Collecting nest-asyncio (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for nest-asyncio from https://files.pythonhosted.org/packages/ab/d3/48c01d1944e0ee49fdc005bf518a68b0582d3bd201e5401664890b62a647/nest_asyncio-1.5.8-py3-none-any.whl.metadata Downloading nest_asyncio-1.5.8-py3-none-any.whl.metadata (2.8 kB) Collecting psutil (from ipykernel->-r docs/requirements.txt (line 5)) Downloading psutil-5.9.5-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (282 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 282.1/282.1 kB 241.5 MB/s eta 0:00:00 Collecting pyzmq>=20 (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for pyzmq>=20 from https://files.pythonhosted.org/packages/a2/e0/08605421a2ede5d87adbde9685599fa7e6af1df700c657759a1892ced942/pyzmq-25.1.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata Downloading pyzmq-25.1.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (4.9 kB) Collecting tornado>=6.1 (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for tornado>=6.1 from https://files.pythonhosted.org/packages/66/a5/e6da56c03ff61200d5a43cfb75ab09316fc0836aa7ee26b4e9dcbfc3ae85/tornado-6.3.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading tornado-6.3.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Collecting traitlets>=5.4.0 (from ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for traitlets>=5.4.0 from https://files.pythonhosted.org/packages/85/e9/d82415708306eb348fb16988c4697076119dfbfa266f17f74e514a23a723/traitlets-5.11.2-py3-none-any.whl.metadata Downloading traitlets-5.11.2-py3-none-any.whl.metadata (10 kB) Collecting nbconvert!=5.4 (from nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for nbconvert!=5.4 from https://files.pythonhosted.org/packages/0d/2e/434ec240806b138a720c89ef8f7cfd84ea15879b63aba6982031ca1571e9/nbconvert-7.9.1-py3-none-any.whl.metadata Downloading nbconvert-7.9.1-py3-none-any.whl.metadata (7.9 kB) Collecting nbformat (from nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for nbformat from https://files.pythonhosted.org/packages/f4/e7/ef30a90b70eba39e675689b9eaaa92530a71d7435ab8f9cae520814e0caf/nbformat-5.9.2-py3-none-any.whl.metadata Downloading nbformat-5.9.2-py3-none-any.whl.metadata (3.4 kB) Collecting plumbum (from pandoc->-r docs/requirements.txt (line 7)) Obtaining dependency information for plumbum from https://files.pythonhosted.org/packages/6f/e8/a9a580d1d67825d8bdc16f3993ea58c4066769d5f8ba34caaa69a5344b39/plumbum-1.8.2-py3-none-any.whl.metadata Downloading plumbum-1.8.2-py3-none-any.whl.metadata (10 kB) Collecting ply (from pandoc->-r docs/requirements.txt (line 7)) Downloading ply-3.11-py2.py3-none-any.whl (49 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 49.6/49.6 kB 193.8 MB/s eta 0:00:00 Collecting alembic>=1.5.0 (from optuna->-r docs/requirements.txt (line 9)) Obtaining dependency information for alembic>=1.5.0 from https://files.pythonhosted.org/packages/a2/8b/46919127496036c8e990b2b236454a0d8655fd46e1df2fd35610a9cbc842/alembic-1.12.0-py3-none-any.whl.metadata Downloading alembic-1.12.0-py3-none-any.whl.metadata (7.2 kB) Collecting cmaes>=0.10.0 (from optuna->-r docs/requirements.txt (line 9)) Obtaining dependency information for cmaes>=0.10.0 from https://files.pythonhosted.org/packages/f7/46/7d9544d453346f6c0c405916c95fdb653491ea2e9976cabb810ba2fe8cd4/cmaes-0.10.0-py3-none-any.whl.metadata Downloading cmaes-0.10.0-py3-none-any.whl.metadata (19 kB) Collecting colorlog (from optuna->-r docs/requirements.txt (line 9)) Downloading colorlog-6.7.0-py2.py3-none-any.whl (11 kB) Collecting numpy (from optuna->-r docs/requirements.txt (line 9)) Obtaining dependency information for numpy from https://files.pythonhosted.org/packages/75/cd/7ae0f2cd3fc68aea6cfb2b7e523842e1fa953adb38efabc110d27ba6e423/numpy-1.26.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading numpy-1.26.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (58 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 58.5/58.5 kB 136.8 MB/s eta 0:00:00 Collecting sqlalchemy>=1.3.0 (from optuna->-r docs/requirements.txt (line 9)) Obtaining dependency information for sqlalchemy>=1.3.0 from https://files.pythonhosted.org/packages/f2/c4/37bb937548c627efbed34ebb629e6fd7c62700227fdc9e38f93c48a4e376/SQLAlchemy-2.0.21-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading SQLAlchemy-2.0.21-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.4 kB) Collecting tqdm (from optuna->-r docs/requirements.txt (line 9)) Obtaining dependency information for tqdm from https://files.pythonhosted.org/packages/00/e5/f12a80907d0884e6dff9c16d0c0114d81b8cd07dc3ae54c5e962cc83037e/tqdm-4.66.1-py3-none-any.whl.metadata Downloading tqdm-4.66.1-py3-none-any.whl.metadata (57 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 57.6/57.6 kB 194.2 MB/s eta 0:00:00 Collecting PyYAML (from optuna->-r docs/requirements.txt (line 9)) Obtaining dependency information for PyYAML from https://files.pythonhosted.org/packages/7d/39/472f2554a0f1e825bd7c5afc11c817cd7a2f3657460f7159f691fbb37c51/PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Collecting Mako (from alembic>=1.5.0->optuna->-r docs/requirements.txt (line 9)) Downloading Mako-1.2.4-py3-none-any.whl (78 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.7/78.7 kB 212.2 MB/s eta 0:00:00 Collecting typing-extensions>=4 (from alembic>=1.5.0->optuna->-r docs/requirements.txt (line 9)) Obtaining dependency information for typing-extensions>=4 from https://files.pythonhosted.org/packages/24/21/7d397a4b7934ff4028987914ac1044d3b7d52712f30e2ac7a2ae5bc86dd0/typing_extensions-4.8.0-py3-none-any.whl.metadata Downloading typing_extensions-4.8.0-py3-none-any.whl.metadata (3.0 kB) Requirement already satisfied: zipp>=0.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from importlib-metadata>=4.8->sphinx->-r docs/requirements.txt (line 4)) (3.17.0) Collecting backcall (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB) Collecting decorator (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Downloading decorator-5.1.1-py3-none-any.whl (9.1 kB) Collecting jedi>=0.16 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for jedi>=0.16 from https://files.pythonhosted.org/packages/20/9f/bc63f0f0737ad7a60800bfd472a4836661adae21f9c2535f3957b1e54ceb/jedi-0.19.1-py2.py3-none-any.whl.metadata Downloading jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB) Collecting pickleshare (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 from https://files.pythonhosted.org/packages/a9/b4/ba77c84edf499877317225d7b7bc047a81f7c2eed9628eeb6bab0ac2e6c9/prompt_toolkit-3.0.39-py3-none-any.whl.metadata Downloading prompt_toolkit-3.0.39-py3-none-any.whl.metadata (6.4 kB) Collecting stack-data (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for stack-data from https://files.pythonhosted.org/packages/f1/7b/ce1eafaf1a76852e2ec9b22edecf1daa58175c090266e9f6c64afcd81d91/stack_data-0.6.3-py3-none-any.whl.metadata Downloading stack_data-0.6.3-py3-none-any.whl.metadata (18 kB) Collecting pexpect>4.3 (from ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 59.0/59.0 kB 198.7 MB/s eta 0:00:00 Requirement already satisfied: MarkupSafe>=2.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from Jinja2>=3.0->sphinx->-r docs/requirements.txt (line 4)) (2.1.3) Collecting python-dateutil>=2.8.2 (from jupyter-client>=6.1.12->ipykernel->-r docs/requirements.txt (line 5)) Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 223.1 MB/s eta 0:00:00 Collecting platformdirs>=2.5 (from jupyter-core!=5.0.*,>=4.12->ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for platformdirs>=2.5 from https://files.pythonhosted.org/packages/56/29/3ec311dc18804409ecf0d2b09caa976f3ae6215559306b5b530004e11156/platformdirs-3.11.0-py3-none-any.whl.metadata Downloading platformdirs-3.11.0-py3-none-any.whl.metadata (11 kB) Collecting beautifulsoup4 (from nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Downloading beautifulsoup4-4.12.2-py3-none-any.whl (142 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 143.0/143.0 kB 220.1 MB/s eta 0:00:00 Collecting bleach!=5.0.0 (from nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Downloading bleach-6.0.0-py3-none-any.whl (162 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 162.5/162.5 kB 239.4 MB/s eta 0:00:00 Collecting defusedxml (from nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Downloading defusedxml-0.7.1-py2.py3-none-any.whl (25 kB) Collecting jupyterlab-pygments (from nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Downloading jupyterlab_pygments-0.2.2-py2.py3-none-any.whl (21 kB) Collecting mistune<4,>=2.0.3 (from nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for mistune<4,>=2.0.3 from https://files.pythonhosted.org/packages/f0/74/c95adcdf032956d9ef6c89a9b8a5152bf73915f8c633f3e3d88d06bd699c/mistune-3.0.2-py3-none-any.whl.metadata Downloading mistune-3.0.2-py3-none-any.whl.metadata (1.7 kB) Collecting nbclient>=0.5.0 (from nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for nbclient>=0.5.0 from https://files.pythonhosted.org/packages/ac/5a/d670ca51e6c3d98574b9647599821590efcd811d71f58e9c89fc59a17685/nbclient-0.8.0-py3-none-any.whl.metadata Downloading nbclient-0.8.0-py3-none-any.whl.metadata (7.8 kB) Collecting pandocfilters>=1.4.1 (from nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Downloading pandocfilters-1.5.0-py2.py3-none-any.whl (8.7 kB) Collecting tinycss2 (from nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Downloading tinycss2-1.2.1-py3-none-any.whl (21 kB) Collecting fastjsonschema (from nbformat->nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for fastjsonschema from https://files.pythonhosted.org/packages/7f/1a/8aad366cf1779351741e5c791ae76dc8b293f72e9448c689cc2e730f06cb/fastjsonschema-2.18.1-py3-none-any.whl.metadata Downloading fastjsonschema-2.18.1-py3-none-any.whl.metadata (2.0 kB) Collecting jsonschema>=2.6 (from nbformat->nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for jsonschema>=2.6 from https://files.pythonhosted.org/packages/0f/bf/a84bc75f069f4f156e1c0d9892fb7325945106c6ecaad9f29d24360872af/jsonschema-4.19.1-py3-none-any.whl.metadata Downloading jsonschema-4.19.1-py3-none-any.whl.metadata (7.9 kB) Requirement already satisfied: charset-normalizer<4,>=2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from requests>=2.25.0->sphinx->-r docs/requirements.txt (line 4)) (3.3.0) Requirement already satisfied: idna<4,>=2.5 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from requests>=2.25.0->sphinx->-r docs/requirements.txt (line 4)) (3.4) Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from requests>=2.25.0->sphinx->-r docs/requirements.txt (line 4)) (2.0.6) Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from requests>=2.25.0->sphinx->-r docs/requirements.txt (line 4)) (2023.7.22) Collecting greenlet!=0.4.17 (from sqlalchemy>=1.3.0->optuna->-r docs/requirements.txt (line 9)) Obtaining dependency information for greenlet!=0.4.17 from https://files.pythonhosted.org/packages/53/6c/c7addbcadd42922a6b60ac604b686fd7578e86f5021c1bfadfb181cf945c/greenlet-3.0.0-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata Downloading greenlet-3.0.0-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.8 kB) Collecting webencodings (from bleach!=5.0.0->nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB) Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Downloading parso-0.8.3-py2.py3-none-any.whl (100 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.8/100.8 kB 221.6 MB/s eta 0:00:00 Collecting attrs>=22.2.0 (from jsonschema>=2.6->nbformat->nbsphinx->-r docs/requirements.txt (line 6)) Downloading attrs-23.1.0-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.2/61.2 kB 193.7 MB/s eta 0:00:00 Collecting jsonschema-specifications>=2023.03.6 (from jsonschema>=2.6->nbformat->nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for jsonschema-specifications>=2023.03.6 from https://files.pythonhosted.org/packages/1c/24/83349ac2189cc2435e84da3f69ba3c97314d3c0622628e55171c6798ed80/jsonschema_specifications-2023.7.1-py3-none-any.whl.metadata Downloading jsonschema_specifications-2023.7.1-py3-none-any.whl.metadata (2.8 kB) Collecting referencing>=0.28.4 (from jsonschema>=2.6->nbformat->nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for referencing>=0.28.4 from https://files.pythonhosted.org/packages/be/8e/56d6f1e2d591f4d6cbcba446cac4a1b0dc4f584537e2071d9bcee8eeab6b/referencing-0.30.2-py3-none-any.whl.metadata Downloading referencing-0.30.2-py3-none-any.whl.metadata (2.6 kB) Collecting rpds-py>=0.7.1 (from jsonschema>=2.6->nbformat->nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for rpds-py>=0.7.1 from https://files.pythonhosted.org/packages/82/29/8fc73714f40f83cc995d590f04ae46b152663a9e7f3f94ddee3765125870/rpds_py-0.10.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading rpds_py-0.10.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.7 kB) Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) Collecting wcwidth (from prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for wcwidth from https://files.pythonhosted.org/packages/58/19/a9ce39f89cf58cf1e7ce01c8bb76ab7e2c7aadbc5a2136c3e192097344f5/wcwidth-0.2.8-py2.py3-none-any.whl.metadata Downloading wcwidth-0.2.8-py2.py3-none-any.whl.metadata (13 kB) Collecting soupsieve>1.2 (from beautifulsoup4->nbconvert!=5.4->nbsphinx->-r docs/requirements.txt (line 6)) Obtaining dependency information for soupsieve>1.2 from https://files.pythonhosted.org/packages/4c/f3/038b302fdfbe3be7da016777069f26ceefe11a681055ea1f7817546508e3/soupsieve-2.5-py3-none-any.whl.metadata Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB) Collecting executing>=1.2.0 (from stack-data->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for executing>=1.2.0 from https://files.pythonhosted.org/packages/bb/3f/748594706233e45fd0e6fb57a2fbfe572485009c52b19919d161a0ae5d52/executing-2.0.0-py2.py3-none-any.whl.metadata Downloading executing-2.0.0-py2.py3-none-any.whl.metadata (9.0 kB) Collecting asttokens>=2.1.0 (from stack-data->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Obtaining dependency information for asttokens>=2.1.0 from https://files.pythonhosted.org/packages/4f/25/adda9979586d9606300415c89ad0e4c5b53d72b92d2747a3c634701a6a02/asttokens-2.4.0-py2.py3-none-any.whl.metadata Downloading asttokens-2.4.0-py2.py3-none-any.whl.metadata (4.9 kB) Collecting pure-eval (from stack-data->ipython>=7.23.1->ipykernel->-r docs/requirements.txt (line 5)) Downloading pure_eval-0.2.2-py3-none-any.whl (11 kB) Downloading pytest-7.4.2-py3-none-any.whl (324 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 324.5/324.5 kB 244.9 MB/s eta 0:00:00 Downloading sphinx_rtd_theme-1.3.0-py2.py3-none-any.whl (2.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 174.6 MB/s eta 0:00:00 Downloading ipykernel-6.25.2-py3-none-any.whl (154 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 154.2/154.2 kB 223.4 MB/s eta 0:00:00 Downloading nbsphinx-0.9.3-py3-none-any.whl (31 kB) Downloading optuna-3.3.0-py3-none-any.whl (404 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 404.2/404.2 kB 247.3 MB/s eta 0:00:00 Downloading alembic-1.12.0-py3-none-any.whl (226 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 226.0/226.0 kB 243.2 MB/s eta 0:00:00 Downloading cmaes-0.10.0-py3-none-any.whl (29 kB) Downloading comm-0.1.4-py3-none-any.whl (6.6 kB) Downloading debugpy-1.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.4/3.4 MB 204.3 MB/s eta 0:00:00 Downloading exceptiongroup-1.1.3-py3-none-any.whl (14 kB) Downloading ipython-8.16.1-py3-none-any.whl (806 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 807.0/807.0 kB 177.6 MB/s eta 0:00:00 Downloading jupyter_client-8.3.1-py3-none-any.whl (104 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 104.1/104.1 kB 131.3 MB/s eta 0:00:00 Downloading jupyter_core-5.3.2-py3-none-any.whl (28 kB) Downloading nbconvert-7.9.1-py3-none-any.whl (256 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 256.4/256.4 kB 195.8 MB/s eta 0:00:00 Downloading nbformat-5.9.2-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.6/77.6 kB 125.7 MB/s eta 0:00:00 Downloading pluggy-1.3.0-py3-none-any.whl (18 kB) Downloading pyzmq-25.1.1-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 238.6 MB/s eta 0:00:00 Downloading SQLAlchemy-2.0.21-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.1/3.1 MB 188.7 MB/s eta 0:00:00 Downloading tornado-6.3.3-cp38-abi3-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (427 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 427.7/427.7 kB 248.0 MB/s eta 0:00:00 Downloading traitlets-5.11.2-py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.7/83.7 kB 187.5 MB/s eta 0:00:00 Downloading nest_asyncio-1.5.8-py3-none-any.whl (5.3 kB) Downloading numpy-1.26.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 160.1 MB/s eta 0:00:00 Downloading plumbum-1.8.2-py3-none-any.whl (127 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 127.0/127.0 kB 229.4 MB/s eta 0:00:00 Downloading PyYAML-6.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 738.9/738.9 kB 234.8 MB/s eta 0:00:00 Downloading tqdm-4.66.1-py3-none-any.whl (78 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.3/78.3 kB 212.9 MB/s eta 0:00:00 Downloading greenlet-3.0.0-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (610 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 610.4/610.4 kB 223.7 MB/s eta 0:00:00 Downloading jedi-0.19.1-py2.py3-none-any.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 239.5 MB/s eta 0:00:00 Downloading jsonschema-4.19.1-py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.3/83.3 kB 216.7 MB/s eta 0:00:00 Downloading mistune-3.0.2-py3-none-any.whl (47 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.0/48.0 kB 200.1 MB/s eta 0:00:00 Downloading nbclient-0.8.0-py3-none-any.whl (73 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 73.1/73.1 kB 121.9 MB/s eta 0:00:00 Downloading platformdirs-3.11.0-py3-none-any.whl (17 kB) Downloading prompt_toolkit-3.0.39-py3-none-any.whl (385 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 385.2/385.2 kB 257.4 MB/s eta 0:00:00 Downloading typing_extensions-4.8.0-py3-none-any.whl (31 kB) Downloading fastjsonschema-2.18.1-py3-none-any.whl (23 kB) Downloading stack_data-0.6.3-py3-none-any.whl (24 kB) Downloading asttokens-2.4.0-py2.py3-none-any.whl (27 kB) Downloading executing-2.0.0-py2.py3-none-any.whl (24 kB) Downloading jsonschema_specifications-2023.7.1-py3-none-any.whl (17 kB) Downloading referencing-0.30.2-py3-none-any.whl (25 kB) Downloading rpds_py-0.10.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 242.7 MB/s eta 0:00:00 Downloading soupsieve-2.5-py3-none-any.whl (36 kB) Downloading wcwidth-0.2.8-py2.py3-none-any.whl (31 kB) Building wheels for collected packages: pandoc Building wheel for pandoc (setup.py): started Building wheel for pandoc (setup.py): finished with status 'done' Created wheel for pandoc: filename=pandoc-2.3-py3-none-any.whl size=33260 sha256=a23a1d33fa59bdf46e66b64379f20cfc1050e3808fa7747e3c77173e28107fdd Stored in directory: /tmp/pip-ephem-wheel-cache-u8sqf4fh/wheels/69/e6/a1/1daa96d919c9e09a71473649b717b8da286f3f8d7719d1cfc5 Successfully built pandoc Installing collected packages: webencodings, wcwidth, pure-eval, ptyprocess, ply, pickleshare, fastjsonschema, executing, backcall, typing-extensions, traitlets, tqdm, tornado, tomli, tinycss2, soupsieve, six, rpds-py, pyzmq, PyYAML, pypandoc, psutil, prompt-toolkit, plumbum, pluggy, platformdirs, pexpect, parso, pandocfilters, numpy, nest-asyncio, mistune, Mako, jupyterlab-pygments, iniconfig, greenlet, exceptiongroup, docutils, defusedxml, decorator, debugpy, colorlog, attrs, sqlalchemy, referencing, python-dateutil, pytest, pockets, pandoc, matplotlib-inline, jupyter-core, jedi, comm, cmaes, bleach, beautifulsoup4, asttokens, stack-data, sphinxcontrib-napoleon, jupyter-client, jsonschema-specifications, alembic, optuna, jsonschema, ipython, nbformat, ipykernel, nbclient, nbconvert, sphinxcontrib-jquery, sphinx-rtd-theme, nbsphinx Attempting uninstall: docutils Found existing installation: docutils 0.20.1 Uninstalling docutils-0.20.1: Successfully uninstalled docutils-0.20.1 Successfully installed Mako-1.2.4 PyYAML-6.0.1 alembic-1.12.0 asttokens-2.4.0 attrs-23.1.0 backcall-0.2.0 beautifulsoup4-4.12.2 bleach-6.0.0 cmaes-0.10.0 colorlog-6.7.0 comm-0.1.4 debugpy-1.8.0 decorator-5.1.1 defusedxml-0.7.1 docutils-0.18.1 exceptiongroup-1.1.3 executing-2.0.0 fastjsonschema-2.18.1 greenlet-3.0.0 iniconfig-2.0.0 ipykernel-6.25.2 ipython-8.16.1 jedi-0.19.1 jsonschema-4.19.1 jsonschema-specifications-2023.7.1 jupyter-client-8.3.1 jupyter-core-5.3.2 jupyterlab-pygments-0.2.2 matplotlib-inline-0.1.6 mistune-3.0.2 nbclient-0.8.0 nbconvert-7.9.1 nbformat-5.9.2 nbsphinx-0.9.3 nest-asyncio-1.5.8 numpy-1.26.0 optuna-3.3.0 pandoc-2.3 pandocfilters-1.5.0 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 platformdirs-3.11.0 pluggy-1.3.0 plumbum-1.8.2 ply-3.11 pockets-0.9.1 prompt-toolkit-3.0.39 psutil-5.9.5 ptyprocess-0.7.0 pure-eval-0.2.2 pypandoc-1.11 pytest-7.4.2 python-dateutil-2.8.2 pyzmq-25.1.1 referencing-0.30.2 rpds-py-0.10.3 six-1.16.0 soupsieve-2.5 sphinx-rtd-theme-1.3.0 sphinxcontrib-jquery-4.1 sphinxcontrib-napoleon-0.7 sqlalchemy-2.0.21 stack-data-0.6.3 tinycss2-1.2.1 tomli-2.0.1 tornado-6.3.3 tqdm-4.66.1 traitlets-5.11.2 typing-extensions-4.8.0 wcwidth-0.2.8 webencodings-0.5.1 [rtd-command-info] start-time: 2023-10-04T22:09:17.207314Z, end-time: 2023-10-04T22:09:52.026719Z, duration: 34, exit-code: 0 python -m pip install --upgrade --upgrade-strategy only-if-needed --no-cache-dir . Processing /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Requirement already satisfied: numpy in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from fpsim==0.26.6) (1.26.0) Collecting numba (from fpsim==0.26.6) Obtaining dependency information for numba from https://files.pythonhosted.org/packages/a1/d2/e3d9752c53244a5cc7abb0c156e0a13bae3dfd99946f9793872963d946af/numba-0.58.0-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata Downloading numba-0.58.0-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.7 kB) Collecting scipy (from fpsim==0.26.6) Obtaining dependency information for scipy from https://files.pythonhosted.org/packages/88/8c/9d1f74196c296046af1f20e6d3fc7fbb27387282315e1643f450bba14329/scipy-1.11.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading scipy-1.11.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.4/60.4 kB 4.9 MB/s eta 0:00:00 Collecting pandas>=1.3 (from fpsim==0.26.6) Obtaining dependency information for pandas>=1.3 from https://files.pythonhosted.org/packages/bc/7e/a9e11bd272e3135108892b6230a115568f477864276181eada3a35d03237/pandas-2.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading pandas-2.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (18 kB) Collecting sciris>=2.0.3 (from fpsim==0.26.6) Obtaining dependency information for sciris>=2.0.3 from https://files.pythonhosted.org/packages/c8/f1/fccc4b5be735fe840313fd3bc59b09be9a3eac920437d98e9c1d184d1530/sciris-3.1.0-py3-none-any.whl.metadata Downloading sciris-3.1.0-py3-none-any.whl.metadata (3.4 kB) Collecting matplotlib>=3.5.0 (from fpsim==0.26.6) Obtaining dependency information for matplotlib>=3.5.0 from https://files.pythonhosted.org/packages/e0/8b/b62bc50b01bb2d4af96bc0045c39d60209e2701e172789ceace20a0866b2/matplotlib-3.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading matplotlib-3.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.8 kB) Collecting seaborn>=0.9 (from fpsim==0.26.6) Obtaining dependency information for seaborn>=0.9 from https://files.pythonhosted.org/packages/7b/e5/83fcd7e9db036c179e0352bfcd20f81d728197a16f883e7b90307a88e65e/seaborn-0.13.0-py3-none-any.whl.metadata Downloading seaborn-0.13.0-py3-none-any.whl.metadata (5.3 kB) Requirement already satisfied: optuna in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from fpsim==0.26.6) (3.3.0) Collecting plotnine (from fpsim==0.26.6) Obtaining dependency information for plotnine from https://files.pythonhosted.org/packages/eb/c1/fcc5985eee6511aa321e68c8f813d9fdbe1b506713a95d4f612a5f963270/plotnine-0.12.3-py3-none-any.whl.metadata Downloading plotnine-0.12.3-py3-none-any.whl.metadata (8.9 kB) Collecting pyarrow (from fpsim==0.26.6) Obtaining dependency information for pyarrow from https://files.pythonhosted.org/packages/49/db/0a40d2a5b2382c77536479894ce2900e5f4c40251681a72d397ba6430f8d/pyarrow-13.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata Downloading pyarrow-13.0.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (3.0 kB) Requirement already satisfied: pyyaml in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from fpsim==0.26.6) (6.0.1) Collecting contourpy>=1.0.1 (from matplotlib>=3.5.0->fpsim==0.26.6) Obtaining dependency information for contourpy>=1.0.1 from https://files.pythonhosted.org/packages/2b/c0/24c34c41a180f875419b536125799c61e2330b997d77a5a818a3bc3e08cd/contourpy-1.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading contourpy-1.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.9 kB) Collecting cycler>=0.10 (from matplotlib>=3.5.0->fpsim==0.26.6) Obtaining dependency information for cycler>=0.10 from https://files.pythonhosted.org/packages/2b/b3/70c33027c4918c10ccf176014b38f8b91cb18ac018a78854543a4fc72609/cycler-0.12.0-py3-none-any.whl.metadata Downloading cycler-0.12.0-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib>=3.5.0->fpsim==0.26.6) Obtaining dependency information for fonttools>=4.22.0 from https://files.pythonhosted.org/packages/70/3e/7b255cef137fbd7e81d80485ba40c35006d044d9371c38eac95278e36e36/fonttools-4.43.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading fonttools-4.43.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (151 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 151.9/151.9 kB 16.2 MB/s eta 0:00:00 Collecting kiwisolver>=1.0.1 (from matplotlib>=3.5.0->fpsim==0.26.6) Obtaining dependency information for kiwisolver>=1.0.1 from https://files.pythonhosted.org/packages/c0/a8/841594f11d0b88d8aeb26991bc4dac38baa909dc58d0c4262a4f7893bcbf/kiwisolver-1.4.5-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata Downloading kiwisolver-1.4.5-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (6.4 kB) Requirement already satisfied: packaging>=20.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from matplotlib>=3.5.0->fpsim==0.26.6) (23.2) Collecting pillow>=6.2.0 (from matplotlib>=3.5.0->fpsim==0.26.6) Obtaining dependency information for pillow>=6.2.0 from https://files.pythonhosted.org/packages/0a/20/a94a0462495de73e248643fb24667270f2e67f44792456ab7207764e80cc/Pillow-10.0.1-cp39-cp39-manylinux_2_28_x86_64.whl.metadata Downloading Pillow-10.0.1-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.5 kB) Collecting pyparsing>=2.3.1 (from matplotlib>=3.5.0->fpsim==0.26.6) Obtaining dependency information for pyparsing>=2.3.1 from https://files.pythonhosted.org/packages/39/92/8486ede85fcc088f1b3dba4ce92dd29d126fd96b0008ea213167940a2475/pyparsing-3.1.1-py3-none-any.whl.metadata Downloading pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB) Requirement already satisfied: python-dateutil>=2.7 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from matplotlib>=3.5.0->fpsim==0.26.6) (2.8.2) Collecting importlib-resources>=3.2.0 (from matplotlib>=3.5.0->fpsim==0.26.6) Obtaining dependency information for importlib-resources>=3.2.0 from https://files.pythonhosted.org/packages/65/6e/09d8816b5cb7a4006ef8ad1717a2703ad9f331dae9717d9f22488a2d6469/importlib_resources-6.1.0-py3-none-any.whl.metadata Downloading importlib_resources-6.1.0-py3-none-any.whl.metadata (4.1 kB) Collecting pytz>=2020.1 (from pandas>=1.3->fpsim==0.26.6) Obtaining dependency information for pytz>=2020.1 from https://files.pythonhosted.org/packages/32/4d/aaf7eff5deb402fd9a24a1449a8119f00d74ae9c2efa79f8ef9994261fc2/pytz-2023.3.post1-py2.py3-none-any.whl.metadata Downloading pytz-2023.3.post1-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.1 (from pandas>=1.3->fpsim==0.26.6) Downloading tzdata-2023.3-py2.py3-none-any.whl (341 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 341.8/341.8 kB 40.6 MB/s eta 0:00:00 Collecting openpyxl (from sciris>=2.0.3->fpsim==0.26.6) Downloading openpyxl-3.1.2-py2.py3-none-any.whl (249 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 250.0/250.0 kB 211.8 MB/s eta 0:00:00 Collecting xlsxwriter (from sciris>=2.0.3->fpsim==0.26.6) Obtaining dependency information for xlsxwriter from https://files.pythonhosted.org/packages/4f/64/42063c82918475ce0a63fa19063607e60969b1498ccd4220274cf808fc60/XlsxWriter-3.1.6-py3-none-any.whl.metadata Downloading XlsxWriter-3.1.6-py3-none-any.whl.metadata (2.6 kB) Requirement already satisfied: psutil in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sciris>=2.0.3->fpsim==0.26.6) (5.9.5) Collecting dill (from sciris>=2.0.3->fpsim==0.26.6) Obtaining dependency information for dill from https://files.pythonhosted.org/packages/f5/3a/74a29b11cf2cdfcd6ba89c0cecd70b37cd1ba7b77978ce611eb7a146a832/dill-0.3.7-py3-none-any.whl.metadata Downloading dill-0.3.7-py3-none-any.whl.metadata (9.9 kB) Collecting zstandard (from sciris>=2.0.3->fpsim==0.26.6) Downloading zstandard-0.21.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.7/2.7 MB 125.0 MB/s eta 0:00:00 Collecting multiprocess (from sciris>=2.0.3->fpsim==0.26.6) Obtaining dependency information for multiprocess from https://files.pythonhosted.org/packages/c6/c9/820b5ab056f4ada76fbe05bd481a948f287957d6cbfd59e2dd2618b408c1/multiprocess-0.70.15-py39-none-any.whl.metadata Downloading multiprocess-0.70.15-py39-none-any.whl.metadata (7.2 kB) Collecting jsonpickle (from sciris>=2.0.3->fpsim==0.26.6) Obtaining dependency information for jsonpickle from https://files.pythonhosted.org/packages/d3/25/6e0a450430b7aa194b0f515f64820fc619314faa289458b7dfca4a026114/jsonpickle-3.0.2-py3-none-any.whl.metadata Downloading jsonpickle-3.0.2-py3-none-any.whl.metadata (7.5 kB) Collecting gitpython (from sciris>=2.0.3->fpsim==0.26.6) Obtaining dependency information for gitpython from https://files.pythonhosted.org/packages/8a/7e/20f7e45878b5aed34320fbeeae8f78acc806e7bd708d00b1c6e64b016f5b/GitPython-3.1.37-py3-none-any.whl.metadata Downloading GitPython-3.1.37-py3-none-any.whl.metadata (12 kB) Collecting jellyfish (from sciris>=2.0.3->fpsim==0.26.6) Obtaining dependency information for jellyfish from https://files.pythonhosted.org/packages/d7/52/0c736765bb40b9f35f8666d78e478ef4ffbae8183fba183ca9e98732cf37/jellyfish-1.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading jellyfish-1.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) Requirement already satisfied: tqdm in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sciris>=2.0.3->fpsim==0.26.6) (4.66.1) Collecting line-profiler (from sciris>=2.0.3->fpsim==0.26.6) Obtaining dependency information for line-profiler from https://files.pythonhosted.org/packages/0d/41/d91ae1d2f3b10684df01d98944c1644e6323ffd465c7e651b4391d5d1761/line_profiler-4.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading line_profiler-4.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (31 kB) Collecting memory-profiler (from sciris>=2.0.3->fpsim==0.26.6) Downloading memory_profiler-0.61.0-py3-none-any.whl (31 kB) Collecting llvmlite<0.42,>=0.41.0dev0 (from numba->fpsim==0.26.6) Obtaining dependency information for llvmlite<0.42,>=0.41.0dev0 from https://files.pythonhosted.org/packages/0f/7a/f2b4d0ed163197dbc9be054492218b96acef6fffb82bb164e815ef7d781e/llvmlite-0.41.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading llvmlite-0.41.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.8 kB) Collecting numpy (from fpsim==0.26.6) Obtaining dependency information for numpy from https://files.pythonhosted.org/packages/69/1f/c95b1108a9972a52d7b1b63ed8ca70466b59b8c1811bd121f1e667cc45d8/numpy-1.25.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata Downloading numpy-1.25.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB) Requirement already satisfied: alembic>=1.5.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from optuna->fpsim==0.26.6) (1.12.0) Requirement already satisfied: cmaes>=0.10.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from optuna->fpsim==0.26.6) (0.10.0) Requirement already satisfied: colorlog in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from optuna->fpsim==0.26.6) (6.7.0) Requirement already satisfied: sqlalchemy>=1.3.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from optuna->fpsim==0.26.6) (2.0.21) Collecting mizani<0.10.0,>0.9.0 (from plotnine->fpsim==0.26.6) Obtaining dependency information for mizani<0.10.0,>0.9.0 from https://files.pythonhosted.org/packages/e2/95/d4e33d3f5bc9fee5512637661208b6b595bda58e9b6a66fa867137761dd7/mizani-0.9.3-py3-none-any.whl.metadata Downloading mizani-0.9.3-py3-none-any.whl.metadata (4.6 kB) Collecting patsy>=0.5.1 (from plotnine->fpsim==0.26.6) Downloading patsy-0.5.3-py2.py3-none-any.whl (233 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 233.8/233.8 kB 246.9 MB/s eta 0:00:00 Collecting statsmodels>=0.14.0 (from plotnine->fpsim==0.26.6) Downloading statsmodels-0.14.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (10.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.1/10.1 MB 176.8 MB/s eta 0:00:00 Requirement already satisfied: Mako in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from alembic>=1.5.0->optuna->fpsim==0.26.6) (1.2.4) Requirement already satisfied: typing-extensions>=4 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from alembic>=1.5.0->optuna->fpsim==0.26.6) (4.8.0) Requirement already satisfied: zipp>=3.1.0 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from importlib-resources>=3.2.0->matplotlib>=3.5.0->fpsim==0.26.6) (3.17.0) Requirement already satisfied: six in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from patsy>=0.5.1->plotnine->fpsim==0.26.6) (1.16.0) Requirement already satisfied: greenlet!=0.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from sqlalchemy>=1.3.0->optuna->fpsim==0.26.6) (3.0.0) Collecting gitdb<5,>=4.0.1 (from gitpython->sciris>=2.0.3->fpsim==0.26.6) Downloading gitdb-4.0.10-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.7/62.7 kB 161.0 MB/s eta 0:00:00 Collecting et-xmlfile (from openpyxl->sciris>=2.0.3->fpsim==0.26.6) Downloading et_xmlfile-1.1.0-py3-none-any.whl (4.7 kB) Collecting smmap<6,>=3.0.1 (from gitdb<5,>=4.0.1->gitpython->sciris>=2.0.3->fpsim==0.26.6) Obtaining dependency information for smmap<6,>=3.0.1 from https://files.pythonhosted.org/packages/a7/a5/10f97f73544edcdef54409f1d839f6049a0d79df68adbc1ceb24d1aaca42/smmap-5.0.1-py3-none-any.whl.metadata Downloading smmap-5.0.1-py3-none-any.whl.metadata (4.3 kB) Requirement already satisfied: MarkupSafe>=0.9.2 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages (from Mako->alembic>=1.5.0->optuna->fpsim==0.26.6) (2.1.3) Downloading matplotlib-3.8.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.6/11.6 MB 173.4 MB/s eta 0:00:00 Downloading pandas-2.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.3/12.3 MB 171.9 MB/s eta 0:00:00 Downloading sciris-3.1.0-py3-none-any.whl (227 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 227.9/227.9 kB 253.0 MB/s eta 0:00:00 Downloading seaborn-0.13.0-py3-none-any.whl (294 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 294.6/294.6 kB 254.5 MB/s eta 0:00:00 Downloading numba-0.58.0-cp39-cp39-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 183.0 MB/s eta 0:00:00 Downloading numpy-1.25.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.3/18.3 MB 164.1 MB/s eta 0:00:00 Downloading plotnine-0.12.3-py3-none-any.whl (1.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.3/1.3 MB 252.0 MB/s eta 0:00:00 Downloading scipy-1.11.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (36.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 36.6/36.6 MB 180.4 MB/s eta 0:00:00 Downloading pyarrow-13.0.0-cp39-cp39-manylinux_2_28_x86_64.whl (40.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.1/40.1 MB 180.0 MB/s eta 0:00:00 Downloading contourpy-1.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (301 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 301.9/301.9 kB 256.5 MB/s eta 0:00:00 Downloading cycler-0.12.0-py3-none-any.whl (8.2 kB) Downloading fonttools-4.43.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 196.9 MB/s eta 0:00:00 Downloading importlib_resources-6.1.0-py3-none-any.whl (33 kB) Downloading kiwisolver-1.4.5-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.6/1.6 MB 242.1 MB/s eta 0:00:00 Downloading llvmlite-0.41.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (43.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 43.6/43.6 MB 184.2 MB/s eta 0:00:00 Downloading mizani-0.9.3-py3-none-any.whl (73 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 73.7/73.7 kB 212.6 MB/s eta 0:00:00 Downloading Pillow-10.0.1-cp39-cp39-manylinux_2_28_x86_64.whl (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 184.9 MB/s eta 0:00:00 Downloading pyparsing-3.1.1-py3-none-any.whl (103 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 103.1/103.1 kB 222.4 MB/s eta 0:00:00 Downloading pytz-2023.3.post1-py2.py3-none-any.whl (502 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.5/502.5 kB 255.4 MB/s eta 0:00:00 Downloading dill-0.3.7-py3-none-any.whl (115 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 115.3/115.3 kB 223.7 MB/s eta 0:00:00 Downloading GitPython-3.1.37-py3-none-any.whl (190 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 190.0/190.0 kB 241.1 MB/s eta 0:00:00 Downloading jellyfish-1.0.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 239.4 MB/s eta 0:00:00 Downloading jsonpickle-3.0.2-py3-none-any.whl (40 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 40.7/40.7 kB 204.3 MB/s eta 0:00:00 Downloading line_profiler-4.1.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (708 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 708.7/708.7 kB 256.8 MB/s eta 0:00:00 Downloading multiprocess-0.70.15-py39-none-any.whl (133 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 133.3/133.3 kB 239.6 MB/s eta 0:00:00 Downloading XlsxWriter-3.1.6-py3-none-any.whl (154 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 154.3/154.3 kB 232.5 MB/s eta 0:00:00 Downloading smmap-5.0.1-py3-none-any.whl (24 kB) Building wheels for collected packages: fpsim Building wheel for fpsim (setup.py): started Building wheel for fpsim (setup.py): finished with status 'done' Created wheel for fpsim: filename=fpsim-0.26.6-py3-none-any.whl size=496269 sha256=3b62bd7f338ec8ff49e5a105d23285ceb23d444fb09722826e7617445213f393 Stored in directory: /tmp/pip-ephem-wheel-cache-2fmk65tn/wheels/54/be/71/b6a93e28e1af4f52153fe34b99119b980ee057025c8abb6ee6 Successfully built fpsim Installing collected packages: pytz, zstandard, xlsxwriter, tzdata, smmap, pyparsing, pillow, numpy, memory-profiler, llvmlite, line-profiler, kiwisolver, jsonpickle, jellyfish, importlib-resources, fonttools, et-xmlfile, dill, cycler, scipy, pyarrow, patsy, pandas, openpyxl, numba, multiprocess, gitdb, contourpy, statsmodels, matplotlib, gitpython, seaborn, sciris, mizani, plotnine, fpsim Attempting uninstall: numpy Found existing installation: numpy 1.26.0 Uninstalling numpy-1.26.0: Successfully uninstalled numpy-1.26.0 Successfully installed contourpy-1.1.1 cycler-0.12.0 dill-0.3.7 et-xmlfile-1.1.0 fonttools-4.43.0 fpsim-0.26.6 gitdb-4.0.10 gitpython-3.1.37 importlib-resources-6.1.0 jellyfish-1.0.1 jsonpickle-3.0.2 kiwisolver-1.4.5 line-profiler-4.1.1 llvmlite-0.41.0 matplotlib-3.8.0 memory-profiler-0.61.0 mizani-0.9.3 multiprocess-0.70.15 numba-0.58.0 numpy-1.25.2 openpyxl-3.1.2 pandas-2.1.1 patsy-0.5.3 pillow-10.0.1 plotnine-0.12.3 pyarrow-13.0.0 pyparsing-3.1.1 pytz-2023.3.post1 scipy-1.11.3 sciris-3.1.0 seaborn-0.13.0 smmap-5.0.1 statsmodels-0.14.0 tzdata-2023.3 xlsxwriter-3.1.6 zstandard-0.21.0 [rtd-command-info] start-time: 2023-10-04T22:09:57.923535Z, end-time: 2023-10-04T22:09:57.978050Z, duration: 0, exit-code: 0 cat docs/conf.py # -*- coding: utf-8 -*- # # Configuration file for the Sphinx documentation builder. # # This file does only contain a selection of the most common options. For a # full list see the documentation: # http://www.sphinx-doc.org/en/master/config # If extensions (or modules to document with autodoc) are in another directory, # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. # import os import subprocess import sys import sphinx_rtd_theme from datetime import datetime import fpsim as fp # Set environment os.environ['SPHINX_BUILD'] = 'True' # This is used so cv.options.set('jupyter') doesn't reset the Matplotlib renderer os.environ['FPSIM_WARNINGS'] = 'error' # Don't let warnings pass in the tutorials on_rtd = os.environ.get('READTHEDOCS') == 'True' if sys.platform in ["linux", "darwin"]: subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) else: subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__))) # Rename "fp_analysis" to "API reference" filename = 'modules.rst' # This must match the Makefile with open(filename) as f: # Read existing file lines = f.readlines() lines[0] = "API reference\n" # Blast away the existing heading and replace with this lines[1] = "=============\n" # Ensure the heading is the right length with open(filename, "w") as f: # Write new file f.writelines(lines) # -- General configuration --------------------------------------------------- # If your documentation needs a minimal Sphinx version, state it here. # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom # ones. extensions = [ 'sphinx.ext.mathjax', 'sphinx.ext.githubpages', 'sphinx.ext.autodoc', 'sphinx.ext.napoleon', 'sphinx.ext.todo', 'sphinx.ext.viewcode', # Add a link to the Python source code for classes, functions etc. 'nbsphinx', ] autodoc_default_options = { 'member-order': 'bysource', 'members': None } autodoc_mock_imports = [] napoleon_google_docstring = True # Configure autosummary autosummary_generate = True # Turn on sphinx.ext.autosummary autoclass_content = "both" # Add __init__ doc (ie. params) to class summaries html_show_sourcelink = False # Remove 'view source code' from top of page (for html, not python) autodoc_member_order = 'bysource' # Keep original ordering add_module_names = False # NB, does not work autodoc_inherit_docstrings = False # Stops sublcasses from including docs from parent classes # Add any paths that contain templates here, relative to this directory. templates_path = ['_templates'] # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: source_suffix = '.rst' master_doc = 'index' # General information about the project. project = 'FPsim' copyright = f'2022 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.\nThese docs were built for {project} version {fp.__version__}\n' author = 'Institute for Disease Modeling' # The version info for the project you're documenting, acts as replacement for # |version| and |release|, also used in various other places throughout the # built documents. # # The versions version = fp.__version__ release = fp.__version__ # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store'] # suppress warnings for multiple possible Python references in the namespace # suppress_warnings = ['ref.python'] pygments_style = 'sphinx' # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = False # RST epilog is added to the end of every topic. Useful for replace # directives to use across the docset. rst_epilog = "\n.. include:: /variables.txt" # -- Options for HTML output ---------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = 'sphinx_rtd_theme' # Add any paths that contain custom themes here, relative to this directory. html_theme_path = [sphinx_rtd_theme.get_html_theme_path()] html_logo = "images/IDM_white.png" html_favicon = "images/favicon.ico" # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ['_static'] html_context = { 'rtd_url': 'https://docs.idmod.org/projects/fpsim/en/latest', 'theme_vcs_pageview_mode': 'edit' } # Add any extra paths that contain custom files (such as robots.txt or # .htaccess) here, relative to this directory. These files are copied # directly to the root of the documentation. # if not on_rtd: html_extra_path = ['robots.txt'] # If not None, a 'Last updated on:' timestamp is inserted at every page # bottom, using the given strftime format. # The empty string is equivalent to '%b %d, %Y'. # html_last_updated_fmt = '%Y-%b-%d' # If true, "Created using Sphinx" is shown in the HTML footer. Default is True. html_show_sphinx = False # If true, an OpenSearch description file will be output, and all pages will # contain a tag referring to it. The value of this option must be the # base URL from which the finished HTML is served. html_use_opensearch = 'docs.idmod.org/projects/fpsim/en/latest' # Output file base name for HTML help builder. htmlhelp_basename = 'FPsim' # -- Options for LaTeX output --------------------------------------------- latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. 'preamble': '%XeLaTeX packages' '\\usepackage{xltxtra}' '\\usepackage{fontspec} %%Font package' '\\usepackage{xunicode}' '%%Select fonts' '\\setmainfont[Mapping=tex-text]{nimbusserif}' '\\setsansfont[Mapping=tex-text]{nimbussans}' '\\setmonofont{nimbusmono}', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, # author, documentclass [howto, manual, or own class]). latex_documents = [ (master_doc, 'fpsim-docs.tex', 'fpsim', 'Institute for Disease Modeling', 'manual'), ] # The name of an image file (relative to this directory) to place at the top of # the title page. # # latex_logo = None # -- Options for manual page output --------------------------------------- # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [ (master_doc, 'fpsim-docs', 'fpsim', [author], 1) ] # If true, show URL addresses after external links. # man_show_urls = True # -- Options for Texinfo output ------------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ (master_doc, 'fpsim-docs', 'fpsim', author, 'Institute for Disease Modeling', 'How to use the FPsim model for family planning simulations.', 'Miscellaneous'), ] # Example configuration for intersphinx: refer to the Python standard library. # intersphinx_mapping = {'https://docs.python.org/': None} intersphinx_mapping = {'python': ('https://docs.python.org/3', None), 'covasim': ('https://docs.idmod.org/projects/covasim/en/latest/', None) } # Configure nbsphinx nbsphinx_kernel_name = "python" nbsphinx_timeout = 90 # Time in seconds; use -1 for no timeout nbsphinx_execute_arguments = [ "--InlineBackend.figure_formats={'svg', 'pdf'}", "--InlineBackend.rc=figure.dpi=96", ] # Modify this to not rerun the Jupyter notebook cells -- usually set by build_docs nb_ex_default = ['auto', 'never'][0] nb_ex = os.getenv('NBSPHINX_EXECUTE') if not nb_ex: nb_ex = nb_ex_default print(f'\n\nBuilding Jupyter notebooks with build option: {nb_ex}\n\n') nbsphinx_execute = nb_ex ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Define this variable in case it's not defined by the user. # It defaults to `alabaster` which is the default from Sphinx. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_theme html_theme = globals().get('html_theme', 'alabaster') #Add project information to the template context. context = { 'html_theme': html_theme, 'current_version': "latest", 'version_slug': "latest", 'MEDIA_URL': "https://media.readthedocs.com/media/", 'STATIC_URL': "https://assets.readthedocs.com/", 'PRODUCTION_DOMAIN': "readthedocs.com", 'proxied_static_path': "/_/static/", 'versions': [ ("latest", "/en/latest/"), ("v0.24.0", "/en/v0.24.0/"), ("v0.23.0", "/en/v0.23.0/"), ("v0.22.1", "/en/v0.22.1/"), ("v0.22.0", "/en/v0.22.0/"), ("v0.19.2", "/en/v0.19.2/"), ], 'downloads': [ ], 'subprojects': [ ], 'slug': 'institute-for-disease-modeling-fpsim', 'name': u'fpsim', 'rtd_language': u'en', 'programming_language': u'py', 'canonical_url': '', 'analytics_code': 'G-SVDSQH04EM', 'single_version': False, 'conf_py_path': '/docs/', 'api_host': 'https://readthedocs.com', 'github_user': 'fpsim', 'proxied_api_host': '/_', 'github_repo': 'fpsim', 'github_version': 'main', 'display_github': True, 'bitbucket_user': 'None', 'bitbucket_repo': 'None', 'bitbucket_version': 'main', 'display_bitbucket': False, 'gitlab_user': 'None', 'gitlab_repo': 'None', 'gitlab_version': 'main', 'display_gitlab': False, 'READTHEDOCS': True, 'using_theme': (html_theme == "default"), 'new_theme': (html_theme == "sphinx_rtd_theme"), 'source_suffix': SUFFIX, 'ad_free': False, 'docsearch_disabled': False, 'user_analytics_code': 'G-SVDSQH04EM', 'global_analytics_code': 'UA-17997319-2', 'commit': '2e4a30e4', } # For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): for key in context: if key not in html_context: html_context[key] = context[key] else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'branch' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'None' readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-fpsim/builds/1762110/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-10-04T22:09:58.505073Z, end-time: 2023-10-04T22:12:44.622374Z, duration: 166, exit-code: 0 python -m sphinx -T -E -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v7.2.6 Matplotlib is building the font cache; this may take a moment. Building Jupyter notebooks with build option: auto making output directory... done building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 28 source files that are out of date updating environment: [new config] 28 added, 0 changed, 0 removed reading sources... [ 4%] fpsim.analyzers reading sources... [ 7%] fpsim.base reading sources... [ 11%] fpsim.calibration reading sources... [ 14%] fpsim.defaults reading sources... [ 18%] fpsim.experiment reading sources... [ 21%] fpsim.interventions reading sources... [ 25%] fpsim.locations reading sources... [ 29%] fpsim.locations.calibrate_auto reading sources... [ 32%] fpsim.locations.calibrate_manual reading sources... [ 36%] fpsim.locations.ethiopia reading sources... [ 39%] fpsim.locations.kenya reading sources... [ 43%] fpsim.locations.senegal reading sources... [ 46%] fpsim.parameters reading sources... [ 50%] fpsim.scenarios reading sources... [ 54%] fpsim.settings reading sources... [ 57%] fpsim.sim reading sources... [ 61%] fpsim.utils reading sources... [ 64%] fpsim.version reading sources... [ 68%] index reading sources... [ 71%] modules reading sources... [ 75%] overview reading sources... [ 79%] tutorials reading sources... [ 82%] tutorials/README reading sources... [ 86%] tutorials/T1_intro /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages/jupyter_client/localinterfaces.py:54: UserWarning: Unexpected error discovering local network interfaces: encoding with 'idna' codec failed (UnicodeError: label too long) ret = f(**kwargs) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages/jupyter_client/localinterfaces.py:54: UserWarning: Unexpected error discovering local network interfaces: encoding with 'idna' codec failed (UnicodeError: label too long) ret = f(**kwargs) /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages/nbsphinx/__init__.py:1058: RuntimeWarning: You are using an unsupported version of pandoc (2.5). Your version must be at least (2.14.2) but less than (4.0.0). Refer to https://pandoc.org/installing.html. Continuing with doubts... nbconvert.utils.pandoc.check_pandoc_version() reading sources... [ 89%] tutorials/T2_scenarios reading sources... [ 93%] tutorials/T3_scenarios_plotting reading sources... [ 96%] tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook reading sources... [100%] whatsnew WARNING: autodoc: failed to import module 'calibrate_manual' from module 'fpsim.locations'; the following exception was raised: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages/sphinx/ext/autodoc/importer.py", line 69, in import_module return importlib.import_module(modname) File "/home/docs/.asdf/installs/python/3.9.17/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "", line 1030, in _gcd_import File "", line 1007, in _find_and_load File "", line 986, in _find_and_load_unlocked File "", line 680, in _load_unlocked File "", line 850, in exec_module File "", line 228, in _call_with_frames_removed File "/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/envs/latest/lib/python3.9/site-packages/fpsim/locations/calibrate_manual.py", line 63, in os.mkdir(f'./{country}/figs') FileNotFoundError: [Errno 2] No such file or directory: './ethiopia/figs' /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:282: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/kenya_skyscrapers.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:282: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/kenya_skyscrapers.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:296: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/use_kenya.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:296: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/use_kenya.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:310: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/birth_spacing_dhs.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:310: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/birth_spacing_dhs.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:324: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/afb.table.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:324: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/afb.table.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:338: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/cpr.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:338: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/cpr.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:352: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/asfr.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:352: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/asfr.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:366: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/mix.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:366: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/mix.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:380: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/kenya_tfr.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:380: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/kenya_tfr.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:394: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/kenya_popsize.png /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb:394: WARNING: image file not readable: tutorials/calibrate_manual_tutorial/data_examples/kenya_popsize.png ../CHANGELOG.rst:70: WARNING: Bullet list ends without a blank line; unexpected unindent. ../CHANGELOG.rst:15: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/196>". ../CHANGELOG.rst:20: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/166>". ../CHANGELOG.rst:27: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/193>". ../CHANGELOG.rst:33: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/165>". ../CHANGELOG.rst:39: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/164>". ../CHANGELOG.rst:45: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/161>". ../CHANGELOG.rst:51: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/156>". ../CHANGELOG.rst:57: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/157>". ../CHANGELOG.rst:63: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/133>". ../CHANGELOG.rst:70: ERROR: Unknown target name: "https://github.com/fpsim/fpsim/pull/133>". looking for now-outdated files... none found pickling environment... done checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-fpsim/checkouts/latest/docs/tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb: WARNING: document isn't included in any toctree done preparing documents... done copying assets... copying static files... done copying extra files... done done writing output... [ 4%] fpsim.analyzers writing output... [ 7%] fpsim.base writing output... [ 11%] fpsim.calibration writing output... [ 14%] fpsim.defaults writing output... [ 18%] fpsim.experiment writing output... [ 21%] fpsim.interventions writing output... [ 25%] fpsim.locations writing output... [ 29%] fpsim.locations.calibrate_auto writing output... [ 32%] fpsim.locations.calibrate_manual writing output... [ 36%] fpsim.locations.ethiopia writing output... [ 39%] fpsim.locations.kenya writing output... [ 43%] fpsim.locations.senegal writing output... [ 46%] fpsim.parameters writing output... [ 50%] fpsim.scenarios writing output... [ 54%] fpsim.settings writing output... [ 57%] fpsim.sim writing output... [ 61%] fpsim.utils writing output... [ 64%] fpsim.version writing output... [ 68%] index writing output... [ 71%] modules writing output... [ 75%] overview writing output... [ 79%] tutorials writing output... [ 82%] tutorials/README writing output... [ 86%] tutorials/T1_intro writing output... [ 89%] tutorials/T2_scenarios writing output... [ 93%] tutorials/T3_scenarios_plotting writing output... [ 96%] tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook writing output... [100%] whatsnew generating indices... genindex py-modindex done copying linked files... copying notebooks ... [ 25%] tutorials/T1_intro.ipynb copying notebooks ... [ 50%] tutorials/T2_scenarios.ipynb copying notebooks ... [ 75%] tutorials/T3_scenarios_plotting.ipynb copying notebooks ... [100%] tutorials/calibrate_manual_tutorial/Calibrate Manual Notebook.ipynb highlighting module code... [ 8%] fpsim.analyzers highlighting module code... [ 17%] fpsim.base highlighting module code... [ 25%] fpsim.calibration highlighting module code... [ 33%] fpsim.experiment highlighting module code... [ 42%] fpsim.interventions highlighting module code... [ 50%] fpsim.locations.ethiopia highlighting module code... [ 58%] fpsim.locations.kenya highlighting module code... [ 67%] fpsim.locations.senegal highlighting module code... [ 75%] fpsim.parameters highlighting module code... [ 83%] fpsim.scenarios highlighting module code... [ 92%] fpsim.sim highlighting module code... [100%] fpsim.utils writing additional pages... search opensearch done copying images... [ 6%] _build/doctrees/nbsphinx/tutorials_T1_intro_2_2.svg copying images... [ 11%] _build/doctrees/nbsphinx/tutorials_T1_intro_13_0.svg copying images... [ 17%] _build/doctrees/nbsphinx/tutorials_T1_intro_13_1.svg copying images... [ 22%] _build/doctrees/nbsphinx/tutorials_T1_intro_13_2.svg copying images... [ 28%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_25_0.png copying images... [ 33%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_29_1.png copying images... [ 39%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_33_0.png copying images... [ 44%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_33_1.png copying images... [ 50%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_33_2.png copying images... [ 56%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_33_3.png copying images... [ 61%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_33_4.png copying images... [ 67%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_33_5.png copying images... [ 72%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_33_6.png copying images... [ 78%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_35_0.png copying images... [ 83%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_37_0.png copying images... [ 89%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_39_0.png copying images... [ 94%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_41_0.png copying images... [100%] _build/doctrees/nbsphinx/tutorials_calibrate_manual_tutorial_Calibrate_Manual_Notebook_41_2.png dumping search index in English (code: en)... done dumping object inventory... done Updating searchtools for Read the Docs search... build succeeded, 31 warnings. The HTML pages are in ../_readthedocs/html.