Read the Docs build information
Build id: 172448
Project: cyverse-doi-request-quickstart
Version: master
Commit: 887df476cd25789229f9327a90210f617eea3882
Date: 2019-01-07T21:55:20.883050Z
State: finished
Success: True


[rtd-command-info] start-time: 2019-01-07T21:55:21.407641Z, end-time: 2019-01-07T21:55:23.380867Z, duration: 1, exit-code: 0
git clone --depth 50 --no-single-branch https://github.com/CyVerse-learning-materials/DOI_request_quickstart.git .
Cloning into '.'...

[rtd-command-info] start-time: 2019-01-07T21:55:23.576526Z, end-time: 2019-01-07T21:55:23.611639Z, duration: 0, exit-code: 0
git checkout --force origin/master
Note: checking out 'origin/master'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch-name>

HEAD is now at 887df47 Update step2.rst

[rtd-command-info] start-time: 2019-01-07T21:55:23.675059Z, end-time: 2019-01-07T21:55:23.681742Z, duration: 0, exit-code: 0
git clean -d -f -f


[rtd-command-info] start-time: 2019-01-07T21:55:24.415454Z, end-time: 2019-01-07T21:55:26.050415Z, duration: 1, exit-code: 0
python2.7 -mvirtualenv --no-site-packages --no-download 
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/bin/python2.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/envs/master/bin/python
Installing setuptools, pip, wheel...done.

[rtd-command-info] start-time: 2019-01-07T21:55:26.112752Z, end-time: 2019-01-07T21:55:27.716385Z, duration: 1, exit-code: 0
python pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip pip
Collecting pip
  Using cached https://files.pythonhosted.org/packages/c2/d7/90f34cb0d83a6c5631cf71dfe64cc1054598c843a92b400e55675cc2ac37/pip-18.1-py2.py3-none-any.whl
Installing collected packages: pip
  Found existing installation: pip 9.0.1
    Uninstalling pip-9.0.1:
      Successfully uninstalled pip-9.0.1
Successfully installed pip-18.1

[rtd-command-info] start-time: 2019-01-07T21:55:27.865138Z, end-time: 2019-01-07T21:55:35.814633Z, duration: 7, exit-code: 0
python pip install --upgrade --cache-dir /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/.cache/pip Pygments==2.2.0 setuptools<40 docutils==0.13.1 mock==1.0.1 pillow==2.6.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.5.4 recommonmark==0.4.0 sphinx<1.8 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<0.6
Collecting Pygments==2.2.0
  Using cached https://files.pythonhosted.org/packages/02/ee/b6e02dc6529e82b75bb06823ff7d005b141037cb1416b10c6f00fc419dca/Pygments-2.2.0-py2.py3-none-any.whl
Collecting setuptools<40
  Using cached https://files.pythonhosted.org/packages/7f/e1/820d941153923aac1d49d7fc37e17b6e73bfbd2904959fffbad77900cf92/setuptools-39.2.0-py2.py3-none-any.whl
Collecting docutils==0.13.1
  Using cached https://files.pythonhosted.org/packages/5f/6d/e864b3c61b81eec57386ac62082fccfe694c7c3046d8723258a37da6d5fc/docutils-0.13.1-py2-none-any.whl
Collecting mock==1.0.1
Collecting pillow==2.6.1
Collecting alabaster!=0.7.5,<0.8,>=0.7
  Using cached https://files.pythonhosted.org/packages/10/ad/00b090d23a222943eb0eda509720a404f531a439e803f6538f35136cae9e/alabaster-0.7.12-py2.py3-none-any.whl
Collecting commonmark==0.5.4
Collecting recommonmark==0.4.0
  Using cached https://files.pythonhosted.org/packages/df/a5/8ee4b84af7f997dfdba71254a88008cfc19c49df98983c9a4919e798f8ce/recommonmark-0.4.0-py2.py3-none-any.whl
Collecting sphinx<1.8
  Using cached https://files.pythonhosted.org/packages/90/f9/a0babe32c78480994e4f1b93315558f5ed756104054a7029c672a8d77b72/Sphinx-1.7.9-py2.py3-none-any.whl
Collecting sphinx-rtd-theme<0.5
  Using cached https://files.pythonhosted.org/packages/ef/0c/e4a462190506bc4bff6ca8cf93da07b2d13e540466d2e8a760352d0c69b0/sphinx_rtd_theme-0.4.2-py2.py3-none-any.whl
Collecting readthedocs-sphinx-ext<0.6
  Using cached https://files.pythonhosted.org/packages/a5/19/abebb2ac7554119cc56d77ce03abcb17b200d6cc3b04dce05cd31248f06f/readthedocs_sphinx_ext-0.5.16-py2.py3-none-any.whl
Collecting sphinxcontrib-websupport (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/52/69/3c2fbdc3702358c5b34ee25e387b24838597ef099761fc9a42c166796e8f/sphinxcontrib_websupport-1.1.0-py2.py3-none-any.whl
Collecting six>=1.5 (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
Collecting requests>=2.0.0 (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/7d/e3/20f3d364d6c8e5d2353c72a67778eb189176f08e873c9900e10c0287b84b/requests-2.21.0-py2.py3-none-any.whl
Collecting packaging (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/89/d1/92e6df2e503a69df9faab187c684585f0136662c12bb1f36901d426f3fab/packaging-18.0-py2.py3-none-any.whl
Collecting typing; python_version < "3.5" (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/cc/3e/29f92b7aeda5b078c86d14f550bf85cff809042e3429ace7af6193c3bc9f/typing-3.6.6-py2-none-any.whl
Collecting imagesize (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/fc/b6/aef66b4c52a6ad6ac18cf6ebc5731ed06d8c9ae4d3b2d9951f261150be67/imagesize-1.1.0-py2.py3-none-any.whl
Collecting babel!=2.0,>=1.3 (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/b8/ad/c6f60602d3ee3d92fbed87675b6fb6a6f9a38c223343ababdb44ba201f10/Babel-2.6.0-py2.py3-none-any.whl
Collecting snowballstemmer>=1.1 (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/d4/6c/8a935e2c7b54a37714656d753e4187ee0631988184ed50c0cf6476858566/snowballstemmer-1.2.1-py2.py3-none-any.whl
Collecting Jinja2>=2.3 (from sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl
Collecting urllib3<1.25,>=1.21.1 (from requests>=2.0.0->sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/62/00/ee1d7de624db8ba7090d1226aebefab96a2c71cd5cfa7629d6ad3f61b79e/urllib3-1.24.1-py2.py3-none-any.whl
Collecting idna<2.9,>=2.5 (from requests>=2.0.0->sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
Collecting chardet<3.1.0,>=3.0.2 (from requests>=2.0.0->sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
Collecting certifi>=2017.4.17 (from requests>=2.0.0->sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/9f/e0/accfc1b56b57e9750eba272e24c4dddeac86852c2bebd1236674d7887e8a/certifi-2018.11.29-py2.py3-none-any.whl
Collecting pyparsing>=2.0.2 (from packaging->sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/71/e8/6777f6624681c8b9701a8a0a5654f3eb56919a01a78e12bf3c73f5a3c714/pyparsing-2.3.0-py2.py3-none-any.whl
Collecting pytz>=0a (from babel!=2.0,>=1.3->sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/61/28/1d3920e4d1d50b19bc5d24398a7cd85cc7b9a75a490570d5a30c57622d34/pytz-2018.9-py2.py3-none-any.whl
Collecting MarkupSafe>=0.23 (from Jinja2>=2.3->sphinx<1.8)
  Using cached https://files.pythonhosted.org/packages/bc/3a/6bfd7b4b202fa33bdda8e4e3d3acc719f381fd730f9a0e7c5f34e845bd4d/MarkupSafe-1.1.0-cp27-cp27mu-manylinux1_x86_64.whl
Installing collected packages: Pygments, setuptools, docutils, mock, pillow, alabaster, commonmark, recommonmark, sphinxcontrib-websupport, six, urllib3, idna, chardet, certifi, requests, pyparsing, packaging, typing, imagesize, pytz, babel, snowballstemmer, MarkupSafe, Jinja2, sphinx, sphinx-rtd-theme, readthedocs-sphinx-ext
  Found existing installation: setuptools 28.8.0
    Uninstalling setuptools-28.8.0:
      Successfully uninstalled setuptools-28.8.0
Successfully installed Jinja2-2.10 MarkupSafe-1.1.0 Pygments-2.2.0 alabaster-0.7.12 babel-2.6.0 certifi-2018.11.29 chardet-3.0.4 commonmark-0.5.4 docutils-0.13.1 idna-2.8 imagesize-1.1.0 mock-1.0.1 packaging-18.0 pillow-2.6.1 pyparsing-2.3.0 pytz-2018.9 readthedocs-sphinx-ext-0.5.16 recommonmark-0.4.0 requests-2.21.0 setuptools-39.2.0 six-1.12.0 snowballstemmer-1.2.1 sphinx-1.7.9 sphinx-rtd-theme-0.4.2 sphinxcontrib-websupport-1.1.0 typing-3.6.6 urllib3-1.24.1

[rtd-command-info] start-time: 2019-01-07T21:55:36.354187Z, end-time: 2019-01-07T21:55:36.416879Z, duration: 0, exit-code: 0
cat conf.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
# General information about the project.

import sys
import os
sys.path.insert(0, os.path.dirname(__file__))

from misc.cyverse_sphinx_conf import *  # noqa

project = 'DOI REQUEST QUICKSTART'
copyright = '2018, CyVerse'
author = 'Ramona L. Walls'
version = '1.0'
release = '1.0'

epub_title = project
epub_author = author
epub_publisher = author
epub_copyright = copyright




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/master/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#


import importlib
import sys
import os.path
from six import string_types

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    else:
        SUFFIX = source_suffix[0]
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')
html_static_path.append('/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    theme = importlib.import_module('sphinx_rtd_theme')
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://media.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "master",
    'version_slug': "master",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://media.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'versions': [
    ("latest", "/en/latest/"),
    ("master", "/en/master/"),
    ],
    'downloads': [ 
    ("htmlzip", "//readthedocs.com/projects/cyverse-doi-request-quickstart/downloads/htmlzip/master/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'cyverse-doi-request-quickstart',
    'name': u'DOI_request_quickstart',
    'rtd_language': u'en',
    'programming_language': u'words',
    'canonical_url': 'https://learning.cyverse.org/projects/cyverse-doi-request-quickstart/en/latest/',
    'analytics_code': 'None',
    'single_version': False,
    'conf_py_path': '/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'CyVerse-learning-materials',
    'github_repo': 'DOI_request_quickstart',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'user_analytics_code': '',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '887df476',
}




if 'html_context' in globals():
    
    html_context.update(context)
    
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

[rtd-command-info] start-time: 2019-01-07T21:55:36.478677Z, end-time: 2019-01-07T21:55:38.130574Z, duration: 1, exit-code: 0
python sphinx-build -T -E -b readthedocs -d _build/doctrees-readthedocs -D language=en . _build/html
Running Sphinx v1.7.9
loading translations [en]... done
making output directory...
building [mo]: targets for 0 po files that are out of date
building [readthedocs]: targets for 10 source files that are out of date
updating environment: 10 added, 0 changed, 0 removed
reading sources... [ 10%] Contributors_maintainers
reading sources... [ 20%] License
reading sources... [ 30%] README
reading sources... [ 40%] index
reading sources... [ 50%] slides/README
reading sources... [ 60%] step1
reading sources... [ 70%] step2
reading sources... [ 80%] step3
reading sources... [ 90%] step4
reading sources... [100%] step5

/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/index.rst:139: WARNING: Duplicate substitution definition name: "Github Repo Link".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/index.rst:91: WARNING: Unknown target name: "background - before you start<step1.html>".
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Contributors_maintainers.md: WARNING: document isn't included in any toctree
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/License.md: WARNING: document isn't included in any toctree
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/README.md: WARNING: document isn't included in any toctree
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/slides/README.md: WARNING: document isn't included in any toctree
done
preparing documents... done
writing output... [ 10%] Contributors_maintainers
writing output... [ 20%] License
writing output... [ 30%] README
writing output... [ 40%] index
writing output... [ 50%] slides/README
writing output... [ 60%] step1
writing output... [ 70%] step2
writing output... [ 80%] step3
writing output... [ 90%] step4
writing output... [100%] step5

generating indices... genindex
writing additional pages... search
copying images... [ 25%] ./img/data_commons/DataCommons_DrkBlue.png
copying images... [ 50%] ./img/homeicon.png
copying images... [ 75%] ./img/cyverse_rgb.png
copying images... [100%] ./img/intercom.png

copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/_static' does not exist
WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static' does not exist
done
copying readthedocs static files... done
copying searchtools... done
copying extra files... done
dumping search index in English (code: en) ... done
dumping object inventory... done
build succeeded, 8 warnings.

The HTML pages are in _build/html.

[rtd-command-info] start-time: 2019-01-07T21:55:38.224029Z, end-time: 2019-01-07T21:55:39.752009Z, duration: 1, exit-code: 0
python sphinx-build -T -b readthedocssinglehtmllocalmedia -d _build/doctrees-readthedocssinglehtmllocalmedia -D language=en . _build/localmedia
Running Sphinx v1.7.9
loading translations [en]... done
making output directory...
loading pickled environment... not yet created
building [mo]: targets for 0 po files that are out of date
building [readthedocssinglehtmllocalmedia]: all documents
updating environment: 10 added, 0 changed, 0 removed
reading sources... [ 10%] Contributors_maintainers
reading sources... [ 20%] License
reading sources... [ 30%] README
reading sources... [ 40%] index
reading sources... [ 50%] slides/README
reading sources... [ 60%] step1
reading sources... [ 70%] step2
reading sources... [ 80%] step3
reading sources... [ 90%] step4
reading sources... [100%] step5

/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/index.rst:139: WARNING: Duplicate substitution definition name: "Github Repo Link".
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/index.rst:91: WARNING: Unknown target name: "background - before you start<step1.html>".
looking for now-outdated files... none found
pickling environment... done
checking consistency... /home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/Contributors_maintainers.md: WARNING: document isn't included in any toctree
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/License.md: WARNING: document isn't included in any toctree
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/README.md: WARNING: document isn't included in any toctree
/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/slides/README.md: WARNING: document isn't included in any toctree
done
preparing documents... done
assembling single document... step1 step2 step3 step4 step5 
writing... done
writing additional files...
copying images... [ 25%] ./img/data_commons/DataCommons_DrkBlue.png
copying images... [ 50%] ./img/homeicon.png
copying images... [ 75%] ./img/cyverse_rgb.png
copying images... [100%] ./img/intercom.png

copying static files... WARNING: html_static_path entry u'/home/docs/checkouts/readthedocs.org/user_builds/cyverse-doi-request-quickstart/checkouts/master/_static' does not exist
WARNING: html_static_path entry '/home/docs/checkouts/readthedocs.org/readthedocs/templates/sphinx/_static' does not exist
done
copying readthedocs static files... done
copying extra files... done
dumping object inventory... done
build succeeded, 8 warnings.

The HTML page is in _build/localmedia.