Read the Docs build information
Build id: 1564830
Project: institute-for-disease-modeling-vis-tools
Version: latest
Commit: 8a54e4a7e9315c33bca8f76c4ad31451386ce8d4
Date: 2023-06-27T19:14:07.015173Z
State: finished
Success: False


[rtd-command-info] start-time: 2023-06-27T19:28:14.590609Z, end-time: 2023-06-27T19:28:23.050064Z, duration: 8, exit-code: 0
git clone --no-single-branch --depth 50 https://github.com/InstituteforDiseaseModeling/vis-tools.git .
Cloning into '.'...

[rtd-command-info] start-time: 2023-06-27T19:28:23.501059Z, end-time: 2023-06-27T19:28:23.582006Z, duration: 0, exit-code: 0
cat .readthedocs.yml
# .readthedocs.yml
# Read the Docs configuration file
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details

# Required
version: 2

# Build documentation in the docs/ directory with Sphinx
sphinx:
  configuration: docs/conf.py
  fail_on_warning: true

# Build documentation with MkDocs
#mkdocs:
#  configuration: mkdocs.yml

# Optionally build your docs in additional formats such as PDF
formats:
  - htmlzip
  - pdf

# Optionally set the version of Python and requirements required to build your docs
python:
  version: 3.7
  install:
    - requirements: docs/requirements.txt
    - method: setuptools
      path: . 

# Optionally rank topics in search results, between -10 (lower) and 10 (higher).
# 0 is normal rank, not no rank

search:
  ranking:
    intro.html: 3
    install.html: 3
    vis_tools.*: 2

[rtd-command-info] start-time: 2023-06-27T19:28:27.463554Z, end-time: 2023-06-27T19:28:32.362459Z, duration: 4, exit-code: 0
python3.7 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH
Using base prefix '/home/docs/.pyenv/versions/3.7.9'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/bin/python3.7
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2023-06-27T19:28:33.018607Z, end-time: 2023-06-27T19:28:34.777832Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
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Installing collected packages: setuptools
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.0.0
    Uninstalling setuptools-68.0.0:
      Successfully uninstalled setuptools-68.0.0
Successfully installed setuptools-58.2.0

[rtd-command-info] start-time: 2023-06-27T19:28:35.257823Z, end-time: 2023-06-27T19:28:42.296341Z, duration: 7, exit-code: 0
python -m pip install --upgrade --no-cache-dir pillow==5.4.1 mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.3 jinja2<3.1.0
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Building wheels for collected packages: mock
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  Created wheel for mock: filename=mock-1.0.1-py3-none-any.whl size=23772 sha256=204f7d549cb61ca0284f2428b9c0bdab50dc1b8d8e2d06e3a8ae02e166aaf7a7
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Successfully built mock
Installing collected packages: snowballstemmer, pytz, mock, commonmark, urllib3, sphinxcontrib-serializinghtml, six, Pygments, pillow, packaging, MarkupSafe, imagesize, idna, docutils, charset-normalizer, certifi, babel, alabaster, sphinxcontrib-websupport, requests, jinja2, sphinx, readthedocs-sphinx-ext, sphinx-rtd-theme, recommonmark
Successfully installed MarkupSafe-2.1.3 Pygments-2.15.1 alabaster-0.7.13 babel-2.12.1 certifi-2023.5.7 charset-normalizer-3.1.0 commonmark-0.9.1 docutils-0.17.1 idna-3.4 imagesize-1.4.1 jinja2-3.0.3 mock-1.0.1 packaging-23.1 pillow-5.4.1 pytz-2023.3 readthedocs-sphinx-ext-2.2.1 recommonmark-0.5.0 requests-2.31.0 six-1.16.0 snowballstemmer-2.2.0 sphinx-1.8.6 sphinx-rtd-theme-0.4.3 sphinxcontrib-serializinghtml-1.1.5 sphinxcontrib-websupport-1.2.4 urllib3-2.0.3

[rtd-command-info] start-time: 2023-06-27T19:28:44.189001Z, end-time: 2023-06-27T19:28:46.877604Z, duration: 2, exit-code: 0
python -m pip install --exists-action=w --no-cache-dir -r docs/requirements.txt
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Requirement already satisfied: urllib3<3,>=1.21.1 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=2.4.4->-r docs/requirements.txt (line 3)) (2.0.3)
Requirement already satisfied: certifi>=2017.4.17 in /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages (from requests>=2.5.0->sphinx~=2.4.4->-r docs/requirements.txt (line 3)) (2023.5.7)
Installing collected packages: sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, pockets, sphinxcontrib-napoleon, sphinx, plantweb, numpydoc
  Attempting uninstall: sphinx
    Found existing installation: Sphinx 1.8.6
    Uninstalling Sphinx-1.8.6:
      Successfully uninstalled Sphinx-1.8.6
Successfully installed numpydoc-1.0.0 plantweb-1.2.1 pockets-0.9.1 sphinx-2.4.5 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-napoleon-0.7 sphinxcontrib-qthelp-1.0.3

[rtd-command-info] start-time: 2023-06-27T19:28:47.391158Z, end-time: 2023-06-27T19:28:48.688557Z, duration: 1, exit-code: 0
python ./setup.py install --force
running install
running bdist_egg
running egg_info
creating vis_tools.egg-info
writing vis_tools.egg-info/PKG-INFO
writing dependency_links to vis_tools.egg-info/dependency_links.txt
writing entry points to vis_tools.egg-info/entry_points.txt
writing requirements to vis_tools.egg-info/requires.txt
writing top-level names to vis_tools.egg-info/top_level.txt
writing manifest file 'vis_tools.egg-info/SOURCES.txt'
reading manifest file 'vis_tools.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'vis_tools.egg-info/SOURCES.txt'
installing library code to build/bdist.linux-x86_64/egg
running install_lib
running build_py
creating build
creating build/lib
creating build/lib/vis_tools
copying vis_tools/Config.py -> build/lib/vis_tools
copying vis_tools/Color.py -> build/lib/vis_tools
copying vis_tools/VisSet.py -> build/lib/vis_tools
copying vis_tools/NamedColors.py -> build/lib/vis_tools
copying vis_tools/SpatialBinary.py -> build/lib/vis_tools
copying vis_tools/__init__.py -> build/lib/vis_tools
copying vis_tools/Demographics.py -> build/lib/vis_tools
copying vis_tools/Survey.py -> build/lib/vis_tools
copying vis_tools/SpatialReports.py -> build/lib/vis_tools
copying vis_tools/MigrationHelpers.py -> build/lib/vis_tools
copying vis_tools/Gradient.py -> build/lib/vis_tools
copying vis_tools/CSVReport.py -> build/lib/vis_tools
copying vis_tools/CZMLWriter.py -> build/lib/vis_tools
copying vis_tools/SpatialBinaryHeader.py -> build/lib/vis_tools
copying vis_tools/defaultvisset.json -> build/lib/vis_tools
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/egg
creating build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/Config.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/Color.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/VisSet.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/defaultvisset.json -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/NamedColors.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/SpatialBinary.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/__init__.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/Demographics.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/Survey.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/SpatialReports.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/MigrationHelpers.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/Gradient.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/CSVReport.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/CZMLWriter.py -> build/bdist.linux-x86_64/egg/vis_tools
copying build/lib/vis_tools/SpatialBinaryHeader.py -> build/bdist.linux-x86_64/egg/vis_tools
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/Config.py to Config.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/Color.py to Color.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/VisSet.py to VisSet.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/NamedColors.py to NamedColors.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/SpatialBinary.py to SpatialBinary.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/__init__.py to __init__.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/Demographics.py to Demographics.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/Survey.py to Survey.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/SpatialReports.py to SpatialReports.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/MigrationHelpers.py to MigrationHelpers.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/Gradient.py to Gradient.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/CSVReport.py to CSVReport.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/CZMLWriter.py to CZMLWriter.cpython-37.pyc
byte-compiling build/bdist.linux-x86_64/egg/vis_tools/SpatialBinaryHeader.py to SpatialBinaryHeader.cpython-37.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying vis_tools.egg-info/PKG-INFO -> build/bdist.linux-x86_64/egg/EGG-INFO
copying vis_tools.egg-info/SOURCES.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying vis_tools.egg-info/dependency_links.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying vis_tools.egg-info/entry_points.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying vis_tools.egg-info/not-zip-safe -> build/bdist.linux-x86_64/egg/EGG-INFO
copying vis_tools.egg-info/requires.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
copying vis_tools.egg-info/top_level.txt -> build/bdist.linux-x86_64/egg/EGG-INFO
creating dist
creating 'dist/vis_tools-1.4-py3.7.egg' and adding 'build/bdist.linux-x86_64/egg' to it
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Processing vis_tools-1.4-py3.7.egg
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/vis_tools-1.4-py3.7.egg
Extracting vis_tools-1.4-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages
Adding vis-tools 1.4 to easy-install.pth file
Installing survey script to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/bin

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/vis_tools-1.4-py3.7.egg
Processing dependencies for vis-tools==1.4
Searching for czml>=0.3.3
Reading https://pypi.org/simple/czml/
Downloading https://files.pythonhosted.org/packages/d9/86/910f69a4b9dd4421c4ce0b9ee1f95380b88517202b63ba201af74f227515/czml-0.3.3.tar.gz#sha256=ed14e24852082c71a19ec8e8ebe35cf838ab54df4886d4f68294f609b126347a
Best match: czml 0.3.3
Processing czml-0.3.3.tar.gz
Writing /tmp/easy_install-okbws38l/czml-0.3.3/setup.cfg
Running czml-0.3.3/setup.py -q bdist_egg --dist-dir /tmp/easy_install-okbws38l/czml-0.3.3/egg-dist-tmp-zfobb1tq
warning: no previously-included files matching '*.pyo' found under directory '*.pyc'
warning: no previously-included files found matching 'czml/.*'
creating /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/czml-0.3.3-py3.7.egg
Extracting czml-0.3.3-py3.7.egg to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages
Adding czml 0.3.3 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/czml-0.3.3-py3.7.egg
Searching for python-dateutil
Reading https://pypi.org/simple/python-dateutil/
Downloading https://files.pythonhosted.org/packages/36/7a/87837f39d0296e723bb9b62bbb257d0355c7f6128853c78955f57342a56d/python_dateutil-2.8.2-py2.py3-none-any.whl#sha256=961d03dc3453ebbc59dbdea9e4e11c5651520a876d0f4db161e8674aae935da9
Best match: python-dateutil 2.8.2
Processing python_dateutil-2.8.2-py2.py3-none-any.whl
Installing python_dateutil-2.8.2-py2.py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages
Adding python-dateutil 2.8.2 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/python_dateutil-2.8.2-py3.7.egg
Searching for pygeoif
Reading https://pypi.org/simple/pygeoif/
Downloading https://files.pythonhosted.org/packages/ec/87/e3f618cd34447c3abfbed9fa34db3f8a5e06f81a8028c1964b2e528f1b12/pygeoif-1.0.0-py3-none-any.whl#sha256=0e96592edf846044ece9ce2194f1f1c2af5f0892c5064fe07e3622cfbdff6d68
Best match: pygeoif 1.0.0
Processing pygeoif-1.0.0-py3-none-any.whl
Installing pygeoif-1.0.0-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages
Adding pygeoif 1.0.0 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/pygeoif-1.0.0-py3.7.egg
Searching for typing-extensions
Reading https://pypi.org/simple/typing-extensions/
Downloading https://files.pythonhosted.org/packages/ad/b6/5b6acdb8f2b5a37adfd79c6996fdd6c96bbd7f66fb6b97abf0a151ea0402/typing_extensions-4.7.0rc1-py3-none-any.whl#sha256=16224afa8cc2b3679dd9e9a1efe719dd2e20a03f0cc2e4cc4c97870ae9622532
Best match: typing-extensions 4.7.0rc1
Processing typing_extensions-4.7.0rc1-py3-none-any.whl
Installing typing_extensions-4.7.0rc1-py3-none-any.whl to /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages
Adding typing-extensions 4.7.0rc1 to easy-install.pth file

Installed /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/typing_extensions-4.7.0rc1-py3.7.egg
Searching for pytz==2023.3
Best match: pytz 2023.3
Adding pytz 2023.3 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages
Searching for six==1.16.0
Best match: six 1.16.0
Adding six 1.16.0 to easy-install.pth file

Using /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages
Finished processing dependencies for vis-tools==1.4

[rtd-command-info] start-time: 2023-06-27T19:28:54.964678Z, end-time: 2023-06-27T19:28:55.021017Z, duration: 0, exit-code: 0
cat docs/conf.py
# -*- coding: utf-8 -*-
#
# Sphinx Demo documentation build configuration file, created by
# sphinx-quickstart on Fri Aug 26 16:52:16 2016.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
#
import os
import subprocess
import sys
import sphinx_rtd_theme
from datetime import datetime

if sys.platform in ["linux", "darwin"]:
    subprocess.check_output(["make", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))
else:
    subprocess.check_output(["make.bat", "generate-api"], cwd=os.path.dirname(os.path.abspath(__file__)))

# -- General configuration ------------------------------------------------

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = [
    'sphinx.ext.mathjax',
    'sphinx.ext.githubpages',
    'sphinx.ext.autodoc',
    'sphinx.ext.napoleon',
    'sphinx.ext.todo',
    'plantweb.directive'
]

plantuml = 'plantweb'

autodoc_default_options = {
    'member-order': 'bysource',
    'members': None
}

autodoc_mock_imports = []


napoleon_google_docstring = True

# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']

# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'

# The encoding of source files.
#
# source_encoding = 'utf-8-sig'

# The master toctree document.
master_doc = 'index'

# General information about the project.
project = u'Vis-Tools'
copyright = f'1999 - {datetime.today().year}, Bill & Melinda Gates Foundation. All rights reserved.'
author = u'Institute for Disease Modeling'

# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
#
# The short X.Y version.
version = u'1.4'
# The full version, including alpha/beta/rc tags.
# release = u'1.0'

# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None

# There are two options for replacing |today|: either, you set today to some
# non-false value, then it is used:
#
# today = ''
#
# Else, today_fmt is used as the format for a strftime call.
#
# today_fmt = '%B %d, %Y'

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']

# The reST default role (used for this markup: `text`) to use for all
# documents.
#
# default_role = None

# If true, '()' will be appended to :func: etc. cross-reference text.
#
# add_function_parentheses = True

# If true, the current module name will be prepended to all description
# unit titles (such as .. function::).
#
# add_module_names = True

# If true, sectionauthor and moduleauthor directives will be shown in the
# output. They are ignored by default.
#
# show_authors = False

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'

# A list of ignored prefixes for module index sorting.
# modindex_common_prefix = []

# If true, keep warnings as "system message" paragraphs in the built documents.
# keep_warnings = False

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = False

# RST epilog is added to the end of every topic. Useful for replace
# directives to use across the docset.

rst_epilog = "\n.. include:: /variables.txt"

# -- Options for HTML output ----------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = 'sphinx_rtd_theme'

# Theme options are theme-specific and customize the look and feel of a theme
# further.  For a list of options available for each theme, see the
# documentation.
# #
# html_theme_options = {
# }

# Add any paths that contain custom themes here, relative to this directory.
html_theme_path = [sphinx_rtd_theme.get_html_theme_path()]

# The name for this set of Sphinx documents.
# "<project> v<release> documentation" by default.
#
# html_title = u'Sphinx Demo v1.0'

# A shorter title for the navigation bar.  Default is the same as html_title.
#
# html_short_title = None

# The name of an image file (relative to this directory) to place at the top
# of the sidebar.
#
html_logo = "images/IDM_white.png"

# The name of an image file (relative to this directory) to use as a favicon of
# the docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
#
html_favicon = "images/favicon.ico"

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']

html_context = {
    'css_files': [
        '_static/theme_overrides.css'
        ]
}
# Add any extra paths that contain custom files (such as robots.txt or
# .htaccess) here, relative to this directory. These files are copied
# directly to the root of the documentation.
#
# html_extra_path = []

# If not None, a 'Last updated on:' timestamp is inserted at every page
# bottom, using the given strftime format.
# The empty string is equivalent to '%b %d, %Y'.
#
# html_last_updated_fmt = None

# If true, SmartyPants will be used to convert quotes and dashes to
# typographically correct entities.
#
# html_use_smartypants = True

# Custom sidebar templates, maps document names to template names.
#
# html_sidebars = {}

# Additional templates that should be rendered to pages, maps page names to
# template names.
#
# html_additional_pages = {}

# If false, no module index is generated.
#
# html_domain_indices = True

# If false, no index is generated.
#
# html_use_index = True

# If true, the index is split into individual pages for each letter.
#
# html_split_index = False

# If true, links to the reST sources are added to the pages.
#
html_show_sourcelink = False

# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
#
html_show_sphinx = False

# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
#
# html_show_copyright = True

# If true, an OpenSearch description file will be output, and all pages will
# contain a <link> tag referring to it.  The value of this option must be the
# base URL from which the finished HTML is served.
#
html_use_opensearch = ''

# This is the file name suffix for HTML files (e.g. ".xhtml").
# html_file_suffix = None

# Language to be used for generating the HTML full-text search index.
# Sphinx supports the following languages:
#   'da', 'de', 'en', 'es', 'fi', 'fr', 'hu', 'it', 'ja'
#   'nl', 'no', 'pt', 'ro', 'ru', 'sv', 'tr', 'zh'
#
# html_search_language = 'en'

# A dictionary with options for the search language support, empty by default.
# 'ja' uses this config value.
# 'zh' user can custom change `jieba` dictionary path.
#
# html_search_options = {'type': 'default'}

# The name of a javascript file (relative to the configuration directory) that
# implements a search results scorer. If empty, the default will be used.
#
# html_search_scorer = 'scorer.js'

# Output file base name for HTML help builder.
htmlhelp_basename = 'Vis-Tools'



# -- Options for LaTeX output ---------------------------------------------

latex_elements = {
     # The paper size ('letterpaper' or 'a4paper').
     #
     # 'papersize': 'letterpaper',

     # The font size ('10pt', '11pt' or '12pt').
     #
     # 'pointsize': '10pt',

     # Additional stuff for the LaTeX preamble.
     #
     # 'preamble': '',

     # Latex figure (float) alignment
     #
     # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
#  author, documentclass [howto, manual, or own class]).
latex_documents = [
    (master_doc, 'vis-tools-docs.tex', u'Vis-Tools',
     u'Institute for Disease Modeling', 'manual'),
]

# The name of an image file (relative to this directory) to place at the top of
# the title page.
#
# latex_logo = None

# For "manual" documents, if this is true, then toplevel headings are parts,
# not chapters.
#
# latex_use_parts = False

# If true, show page references after internal links.
#
# latex_show_pagerefs = False

# If true, show URL addresses after external links.
#
# latex_show_urls = False

# Documents to append as an appendix to all manuals.
#
# latex_appendices = []

# It false, will not define \strong, \code,     itleref, \crossref ... but only
# \sphinxstrong, ..., \sphinxtitleref, ... To help avoid clash with user added
# packages.
#
# latex_keep_old_macro_names = True

# If false, no module index is generated.
#
# latex_domain_indices = True


# -- Options for manual page output ---------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
    (master_doc, 'vis-tools-docs', u'Vis-Tools',
     [author], 1)
]

# If true, show URL addresses after external links.
#
man_show_urls = True


# -- Options for Texinfo output -------------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (master_doc, 'vis-tools-docs', u'Vis-Tools',
     author, 'Institute for Disease Modeling', 'How to use the IDM Vis-Tools toolkit.',
     'Miscellaneous'),
]

# Documents to append as an appendix to all manuals.
#
# texinfo_appendices = []

# If false, no module index is generated.
#
# texinfo_domain_indices = True

# How to display URL addresses: 'footnote', 'no', or 'inline'.
#
# texinfo_show_urls = 'footnote'

# If true, do not generate a @detailmenu in the "Top" node's menu.
#
# texinfo_no_detailmenu = False


# Example configuration for intersphinx: refer to the Python standard library.
# intersphinx_mapping = {'https://docs.python.org/': None}




###########################################################################
#          auto-created readthedocs.org specific configuration            #
###########################################################################


#
# The following code was added during an automated build on readthedocs.org
# It is auto created and injected for every build. The result is based on the
# conf.py.tmpl file found in the readthedocs.org codebase:
# https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl
#
# Note: this file shouldn't rely on extra dependencies.

import importlib
import sys
import os.path

# Borrowed from six.
PY3 = sys.version_info[0] == 3
string_types = str if PY3 else basestring

from sphinx import version_info

# Get suffix for proper linking to GitHub
# This is deprecated in Sphinx 1.3+,
# as each page can have its own suffix
if globals().get('source_suffix', False):
    if isinstance(source_suffix, string_types):
        SUFFIX = source_suffix
    elif isinstance(source_suffix, (list, tuple)):
        # Sphinx >= 1.3 supports list/tuple to define multiple suffixes
        SUFFIX = source_suffix[0]
    elif isinstance(source_suffix, dict):
        # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes
        SUFFIX = list(source_suffix.keys())[0]  # make a ``list()`` for py2/py3 compatibility
    else:
        # default to .rst
        SUFFIX = '.rst'
else:
    SUFFIX = '.rst'

# Add RTD Static Path. Add to the end because it overwrites previous files.
if not 'html_static_path' in globals():
    html_static_path = []
if os.path.exists('_static'):
    html_static_path.append('_static')

# Add RTD Theme only if they aren't overriding it already
using_rtd_theme = (
    (
        'html_theme' in globals() and
        html_theme in ['default'] and
        # Allow people to bail with a hack of having an html_style
        'html_style' not in globals()
    ) or 'html_theme' not in globals()
)
if using_rtd_theme:
    html_theme = 'sphinx_rtd_theme'
    html_style = None
    html_theme_options = {}


# This following legacy behavior will gradually be sliced out until its deprecated and removed.
# Skipped for Sphinx 6+
# Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH
# Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023)
if (
        using_rtd_theme
        and version_info < (6,0)
        and not False
    ):
    theme = importlib.import_module('sphinx_rtd_theme')
    if 'html_theme_path' in globals():
        html_theme_path.append(theme.get_html_theme_path())
    else:
        html_theme_path = [theme.get_html_theme_path()]

# Define websupport2_base_url and websupport2_static_url
if globals().get('websupport2_base_url', False):
    websupport2_base_url = 'https://readthedocs.com/websupport'
    websupport2_static_url = 'https://assets.readthedocs.com/'


#Add project information to the template context.
context = {
    'using_theme': using_rtd_theme,
    'html_theme': html_theme,
    'current_version': "latest",
    'version_slug': "latest",
    'MEDIA_URL': "https://media.readthedocs.com/media/",
    'STATIC_URL': "https://assets.readthedocs.com/",
    'PRODUCTION_DOMAIN': "readthedocs.com",
    'proxied_static_path': "/_/static/",
    'versions': [
    ("latest", "/en/latest/"),
    ],
    'downloads': [ 
    ("pdf", "//docs.idmod.org/_/downloads/vis-tools/en/latest/pdf/"),
    ("html", "//docs.idmod.org/_/downloads/vis-tools/en/latest/htmlzip/"),
    ],
    'subprojects': [ 
    ],
    'slug': 'institute-for-disease-modeling-vis-tools',
    'name': u'vis-tools',
    'rtd_language': u'en',
    'programming_language': u'py',
    'canonical_url': '',
    'analytics_code': 'G-SVDSQH04EM',
    'single_version': False,
    'conf_py_path': '/docs/',
    'api_host': 'https://readthedocs.com',
    'github_user': 'InstituteforDiseaseModeling',
    'proxied_api_host': '/_',
    'github_repo': 'vis-tools',
    'github_version': 'master',
    'display_github': True,
    'bitbucket_user': 'None',
    'bitbucket_repo': 'None',
    'bitbucket_version': 'master',
    'display_bitbucket': False,
    'gitlab_user': 'None',
    'gitlab_repo': 'None',
    'gitlab_version': 'master',
    'display_gitlab': False,
    'READTHEDOCS': True,
    'using_theme': (html_theme == "default"),
    'new_theme': (html_theme == "sphinx_rtd_theme"),
    'source_suffix': SUFFIX,
    'ad_free': False,
    'docsearch_disabled': False,
    'user_analytics_code': 'G-SVDSQH04EM',
    'global_analytics_code': 'UA-17997319-2',
    'commit': '8a54e4a7',
}

# For sphinx >=1.8 we can use html_baseurl to set the canonical URL.
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl
if version_info >= (1, 8):
    if not globals().get('html_baseurl'):
        html_baseurl = context['canonical_url']
    context['canonical_url'] = None





if 'html_context' in globals():
    for key in context:
        if key not in html_context:
            html_context[key] = context[key]
else:
    html_context = context

# Add custom RTD extension
if 'extensions' in globals():
    # Insert at the beginning because it can interfere
    # with other extensions.
    # See https://github.com/rtfd/readthedocs.org/pull/4054
    extensions.insert(0, "readthedocs_ext.readthedocs")
else:
    extensions = ["readthedocs_ext.readthedocs"]

# Add External version warning banner to the external version documentation
if 'branch' == 'external':
    extensions.insert(1, "readthedocs_ext.external_version_warning")
    readthedocs_vcs_url = 'None'
    readthedocs_build_url = 'https://readthedocs.com/projects/institute-for-disease-modeling-vis-tools/builds/1564830/'

project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
    language_user in ('zh_CN', 'zh_TW'),
    project_language in ('zh_CN', 'zh_TW'),
])

japanese = any([
    language_user == 'ja',
    project_language == 'ja',
])

if chinese:
    latex_engine = latex_engine_user or 'xelatex'

    latex_elements_rtd = {
        'preamble': '\\usepackage[UTF8]{ctex}\n',
    }
    latex_elements = latex_elements_user or latex_elements_rtd
elif japanese:
    latex_engine = latex_engine_user or 'platex'

# Make sure our build directory is always excluded
exclude_patterns = globals().get('exclude_patterns', [])
exclude_patterns.extend(['_build'])

[rtd-command-info] start-time: 2023-06-27T19:28:55.974110Z, end-time: 2023-06-27T19:29:01.366086Z, duration: 5, exit-code: 1
python -m sphinx -T -E -W --keep-going -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html
Running Sphinx v2.4.5
rm: cannot remove 'modules.rst': No such file or directory
rm: cannot remove 'vis_tools_index.rst': No such file or directory
make: [generate-api] Error 1 (ignored)
loading translations [en]... done
making output directory... done
building [mo]: targets for 0 po files that are out of date
building [html]: targets for 32 source files that are out of date
updating environment: [new config] 32 added, 0 changed, 0 removed
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reading sources... [  6%] geospat
reading sources... [  9%] geospat-controls
reading sources... [ 12%] geospat-functions
reading sources... [ 15%] geospat-overview
reading sources... [ 18%] glossary
reading sources... [ 21%] index
reading sources... [ 25%] install
reading sources... [ 28%] intro
reading sources... [ 31%] overview
reading sources... [ 34%] preproc
reading sources... [ 37%] preproc-classes
reading sources... [ 40%] preproc-components
reading sources... [ 43%] preproc-cycle
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reading sources... [100%] vis_tools_index

WARNING: autodoc: failed to import module 'vis_tools'; the following exception was raised:
cannot import name 'as_shape' from 'pygeoif.geometry' (/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/pygeoif-1.0.0-py3.7.egg/pygeoif/geometry.py)
WARNING: autodoc: failed to import module 'CZMLWriter' from module 'vis_tools'; the following exception was raised:
cannot import name 'as_shape' from 'pygeoif.geometry' (/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/pygeoif-1.0.0-py3.7.egg/pygeoif/geometry.py)
WARNING: autodoc: failed to import module 'Survey' from module 'vis_tools'; the following exception was raised:
cannot import name 'as_shape' from 'pygeoif.geometry' (/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/pygeoif-1.0.0-py3.7.egg/pygeoif/geometry.py)
WARNING: autodoc: failed to import module 'VisSet' from module 'vis_tools'; the following exception was raised:
cannot import name 'as_shape' from 'pygeoif.geometry' (/home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/pygeoif-1.0.0-py3.7.egg/pygeoif/geometry.py)
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
writing output... [  3%] example
writing output... [  6%] geospat
writing output... [  9%] geospat-controls
writing output... [ 12%] geospat-functions
writing output... [ 15%] geospat-overview
writing output... [ 18%] glossary
writing output... [ 21%] index
writing output... [ 25%] install
writing output... [ 28%] intro
writing output... [ 31%] overview
writing output... [ 34%] preproc
writing output... [ 37%] preproc-classes
writing output... [ 40%] preproc-components
writing output... [ 43%] preproc-cycle
writing output... [ 46%] prereqs
writing output... [ 50%] quickstartcomps
writing output... [ 53%] troubleshoot
writing output... [ 56%] vis_tools
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writing output... [ 65%] vis_tools.Color
writing output... [ 68%] vis_tools.Config
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writing output... [100%] vis_tools_index

generating indices...  genindex py-modindexdone
writing additional pages...  searchdone
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copying static files... ... done
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dumping object inventory... done
build finished with problems, 4 warnings.
Updating searchtools for Read the Docs search... /home/docs/checkouts/readthedocs.org/user_builds/institute-for-disease-modeling-vis-tools/envs/latest/lib/python3.7/site-packages/sphinx_rtd_theme/search.html:21: RemovedInSphinx30Warning: To modify script_files in the theme is deprecated. Please insert a <script> tag directly in your theme instead.
  {% endblock %}