Read the Docs build information Build id: 1362247 Project: quantify-quantify-scheduler Version: 641 Commit: fac4f0f694e9b2725809adec60b56b555150d09d Date: 2023-03-20T14:53:05.680982Z State: finished Success: False [rtd-command-info] start-time: 2023-03-20T14:53:56.871327Z, end-time: 2023-03-20T14:54:01.592686Z, duration: 4, exit-code: 0 git clone --no-single-branch --depth 50 git@gitlab.com:quantify-os/quantify-scheduler.git . Cloning into '.'... Warning: Permanently added 'gitlab.com,172.65.251.78' (ECDSA) to the list of known hosts. [rtd-command-info] start-time: 2023-03-20T14:54:01.839124Z, end-time: 2023-03-20T14:54:03.531642Z, duration: 1, exit-code: 0 git fetch origin --force --tags --prune --prune-tags --depth 50 merge-requests/641/head:external-641 Warning: Permanently added 'gitlab.com,172.65.251.78' (ECDSA) to the list of known hosts. From gitlab.com:quantify-os/quantify-scheduler * [new ref] refs/merge-requests/641/head -> external-641 [rtd-command-info] start-time: 2023-03-20T14:54:03.715713Z, end-time: 2023-03-20T14:54:03.918743Z, duration: 0, exit-code: 0 git checkout --force fac4f0f694e9b2725809adec60b56b555150d09d Note: switching to 'fac4f0f694e9b2725809adec60b56b555150d09d'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at fac4f0f6 Raise warning when UHFQA is added to IC after HDAWG [rtd-command-info] start-time: 2023-03-20T14:54:04.179011Z, end-time: 2023-03-20T14:54:04.257676Z, duration: 0, exit-code: 0 git clean -d -f -f [rtd-command-info] start-time: 2023-03-20T14:54:05.236018Z, end-time: 2023-03-20T14:54:09.943132Z, duration: 4, exit-code: 0 python3.8 -mvirtualenv $READTHEDOCS_VIRTUALENV_PATH Using base prefix '/home/docs/.pyenv/versions/3.8.6' New python executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/bin/python3.8 Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/bin/python Installing setuptools, pip, wheel... done. 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filename=zhinst_toolkit-0.1.5-py3-none-any.whl size=202042 sha256=45fb6fba5f07669ee3bb680df1389e4bf0277ca8253e588062356c35bac7c641 Stored in directory: /tmp/pip-ephem-wheel-cache-6il5e03k/wheels/4a/53/71/6c78435ed5c361179bcf117e4b75f06a99bf714dd23a29d478 Building wheel for qblox-instruments (setup.py): started Building wheel for qblox-instruments (setup.py): finished with status 'done' Created wheel for qblox-instruments: filename=qblox_instruments-0.9.0-py3-none-any.whl size=1361099 sha256=2249e999ca550376bc07b4faf0208490d303b418d4af00aa1340f100c9e2cd27 Stored in directory: /tmp/pip-ephem-wheel-cache-6il5e03k/wheels/7a/21/32/9a9d4634bb9208d3aab2a32efd7a30f5c0a053874f7c41bbcb Building wheel for quantify-scheduler (pyproject.toml): started Building wheel for quantify-scheduler (pyproject.toml): finished with status 'done' Created wheel for quantify-scheduler: filename=quantify_scheduler-0.12.4.dev11+gfac4f0f6-py3-none-any.whl size=272936 sha256=56e45c6453e80544aac697c857c3d1e53af01ec45677265c0a23abfd596a7ea0 Stored in directory: /tmp/pip-ephem-wheel-cache-6il5e03k/wheels/07/56/2a/41c61b108c3220aa053b40a7c6bb9d760c077bea1a728a03a6 Building wheel for sphinx-jsonschema (setup.py): started Building wheel for sphinx-jsonschema (setup.py): finished with status 'done' Created wheel for sphinx-jsonschema: filename=sphinx_jsonschema-1.19.1-py3-none-any.whl size=15414 sha256=24f841934b2059dd44e941ba3ec29f2815effee41991fd6397d9f82ebc5aa0ae Stored in directory: /tmp/pip-ephem-wheel-cache-6il5e03k/wheels/40/ab/cc/445e746d632c3b4788a325ba5fd2ae780d6214ad9d0f7318a8 Building wheel for methodtools (setup.py): started Building wheel for methodtools (setup.py): finished with status 'done' Created wheel for methodtools: filename=methodtools-0.4.7-py3-none-any.whl size=3985 sha256=5f44636ee74e597b507bf335a504eb6a127f498458372892602ce465730548e7 Stored in directory: /tmp/pip-ephem-wheel-cache-6il5e03k/wheels/1a/a5/85/729293bc52c9a1be64202c2127a3131e4beb4dc13c0dc08316 Building wheel for wirerope (pyproject.toml): started Building wheel for wirerope (pyproject.toml): finished with status 'done' Created wheel for wirerope: filename=wirerope-0.4.7-py3-none-any.whl size=8977 sha256=21ad5a14bfe9943cb5096df604fec4468ef2b6262feb2a72e59b428e46d3526a Stored in directory: /tmp/pip-ephem-wheel-cache-6il5e03k/wheels/2a/51/1b/a0029832b7f11c635dc789903caa152a7617aae25764e877b6 Building wheel for future (setup.py): started Building wheel for future (setup.py): finished with status 'done' Created wheel for future: filename=future-0.18.3-py3-none-any.whl size=492035 sha256=98b6ea5ac8de43bd4daf176e8c83c6d9ebd2a95d34827db0ab82e3dc2a39a959 Stored in directory: /tmp/pip-ephem-wheel-cache-6il5e03k/wheels/a0/0b/ee/e6994fadb42c1354dcccb139b0bf2795271bddfe6253ccdf11 Successfully built zhinst-toolkit qblox-instruments quantify-scheduler sphinx-jsonschema methodtools wirerope future Installing collected packages: webencodings, wcwidth, sortedcontainers, pyserial, PyQt5-Qt5, pyasn1, pure-eval, ptyprocess, pickleshare, opencensus-context, mistune, ifaddr, fastjsonschema, executing, backcall, appnope, zipp, xxhash, wrapt, wirerope, widgetsnbextension, websockets, unidecode, typing-extensions, traitlets, tqdm, tornado, toolz, tomli, toml, tinycss2, tenacity, tabulate, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sortedcollections, setuptools, ruamel.yaml.clib, rsa, pyzmq, pyyaml, pytzdata, python-dateutil, pyrsistent, PyQt5-sip, pyparsing, PyJWT, pycparser, pyasn1-modules, psutil, protobuf, prompt-toolkit, portalocker, platformdirs, pkgutil-resolve-name, pexpect, pathvalidate, parso, pandocfilters, orjson, numpy, networkx, nest-asyncio, mypy-extensions, mdurl, marshmallow, lazy-object-proxy, lazy-loader, latexcodec, kiwisolver, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, jinja2, greenlet, future, fonttools, filelock, dunamai, docutils, dill, defusedxml, decorator, debugpy, cycler, contextlib2, colorama, cloudpickle, click, cachetools, bleach, attrs, asttokens, asteval, zhinst, uncertainties, typing-inspect, stack-data, sqlalchemy, spirack, sphinx-jsonschema, scipy, schema, ruamel.yaml, pyvisa, pyqtgraph, pyqt5, pydantic, pybtex, plotly, pendulum, pandas, methodtools, matplotlib-inline, marshmallow-enum, markdown-it-py, loky, livereload, jupyter-core, jedi, importlib-resources, importlib-metadata, h5py, googleapis-common-protos, google-auth, get_version, contourpy, comm, columnar, cffi, beautifulsoup4, azure-core, astroid, zhinst-toolkit, xarray, versioningit, sphinx, rich, pybtex-docutils, mdit-py-plugins, matplotlib, lmfit, jupyter-client, jsonschema, IPython, h5netcdf, google-api-core, dataclasses-json, cryptography, adaptive, sphinxcontrib-jquery, sphinxcontrib-bibtex, sphinx-togglebutton, sphinx-autodoc-typehints, sphinx-autobuild, sphinx-autoapi, scanpydoc, opencensus, nbformat, myst-parser, ipykernel, broadbean, sphinx-rtd-theme, nbclient, msal, jupytext, ipywidgets, nbconvert, msal-extensions, jupyter-cache, myst-nb, jupyter-sphinx, azure-identity, opencensus-ext-azure, qcodes, zhinst-qcodes, quantify-core, qblox-instruments, quantify-scheduler Attempting uninstall: setuptools Found existing installation: setuptools 58.2.0 Uninstalling setuptools-58.2.0: Successfully uninstalled setuptools-58.2.0 Attempting uninstall: jinja2 Found existing installation: Jinja2 3.0.3 Uninstalling Jinja2-3.0.3: Successfully uninstalled Jinja2-3.0.3 Attempting uninstall: docutils Found existing installation: docutils 0.17.1 Uninstalling docutils-0.17.1: Successfully uninstalled docutils-0.17.1 Attempting uninstall: sphinx Found existing installation: Sphinx 1.8.6 Uninstalling Sphinx-1.8.6: Successfully uninstalled Sphinx-1.8.6 Attempting uninstall: sphinx-rtd-theme Found existing installation: sphinx-rtd-theme 0.4.3 Uninstalling sphinx-rtd-theme-0.4.3: Successfully uninstalled sphinx-rtd-theme-0.4.3 Successfully installed IPython-8.11.0 PyJWT-2.6.0 PyQt5-Qt5-5.15.2 PyQt5-sip-12.11.1 adaptive-0.15.1 appnope-0.1.3 asteval-0.9.29 astroid-2.15.0 asttokens-2.2.1 attrs-22.2.0 azure-core-1.26.3 azure-identity-1.12.0 backcall-0.2.0 beautifulsoup4-4.12.0 bleach-6.0.0 broadbean-0.11.0 cachetools-5.3.0 cffi-1.15.1 click-8.1.3 cloudpickle-2.2.1 colorama-0.4.6 columnar-1.4.1 comm-0.1.2 contextlib2-21.6.0 contourpy-1.0.7 cryptography-39.0.2 cycler-0.11.0 dataclasses-json-0.5.7 debugpy-1.6.6 decorator-5.1.1 defusedxml-0.7.1 dill-0.3.6 docutils-0.18.1 dunamai-1.16.0 executing-1.2.0 fastjsonschema-2.16.3 filelock-3.10.0 fonttools-4.39.2 future-0.18.3 get_version-3.5.4 google-api-core-2.11.0 google-auth-2.16.2 googleapis-common-protos-1.58.0 greenlet-2.0.2 h5netcdf-1.1.0 h5py-3.8.0 ifaddr-0.2.0 importlib-metadata-6.1.0 importlib-resources-5.12.0 ipykernel-6.22.0 ipywidgets-8.0.4 jedi-0.18.2 jinja2-3.1.2 jsonpointer-2.3 jsonschema-4.17.3 jupyter-cache-0.5.0 jupyter-client-8.1.0 jupyter-core-5.3.0 jupyter-sphinx-0.4.0 jupyterlab-pygments-0.2.2 jupyterlab-widgets-3.0.5 jupytext-1.14.5 kiwisolver-1.4.4 latexcodec-2.0.1 lazy-loader-0.1 lazy-object-proxy-1.9.0 livereload-2.6.3 lmfit-1.1.0 loky-3.3.0 markdown-it-py-2.2.0 marshmallow-3.19.0 marshmallow-enum-1.5.1 matplotlib-3.7.1 matplotlib-inline-0.1.6 mdit-py-plugins-0.3.5 mdurl-0.1.2 methodtools-0.4.7 mistune-2.0.5 msal-1.21.0 msal-extensions-1.0.0 mypy-extensions-1.0.0 myst-nb-0.17.1 myst-parser-0.18.1 nbclient-0.5.13 nbconvert-7.2.10 nbformat-5.8.0 nest-asyncio-1.5.6 networkx-3.0 numpy-1.24.2 opencensus-0.11.2 opencensus-context-0.1.3 opencensus-ext-azure-1.1.9 orjson-3.8.7 pandas-1.5.3 pandocfilters-1.5.0 parso-0.8.3 pathvalidate-2.5.2 pendulum-2.1.2 pexpect-4.8.0 pickleshare-0.7.5 pkgutil-resolve-name-1.3.10 platformdirs-3.1.1 plotly-5.13.1 portalocker-2.7.0 prompt-toolkit-3.0.38 protobuf-4.22.1 psutil-5.9.4 ptyprocess-0.7.0 pure-eval-0.2.2 pyasn1-0.4.8 pyasn1-modules-0.2.8 pybtex-0.24.0 pybtex-docutils-1.0.2 pycparser-2.21 pydantic-1.10.6 pyparsing-3.0.9 pyqt5-5.15.9 pyqtgraph-0.13.2 pyrsistent-0.19.3 pyserial-3.5 python-dateutil-2.8.2 pytzdata-2020.1 pyvisa-1.13.0 pyyaml-6.0 pyzmq-25.0.2 qblox-instruments-0.9.0 qcodes-0.37.0 quantify-core-0.7.1 quantify-scheduler-0.12.4.dev11+gfac4f0f6 rich-13.3.2 rsa-4.9 ruamel.yaml-0.17.21 ruamel.yaml.clib-0.2.7 scanpydoc-0.7.8 schema-0.7.5 scipy-1.10.1 setuptools-67.6.0 sortedcollections-2.1.0 sortedcontainers-2.4.0 soupsieve-2.4 sphinx-5.3.0 sphinx-autoapi-2.0.1 sphinx-autobuild-2021.3.14 sphinx-autodoc-typehints-1.22 sphinx-jsonschema-1.19.1 sphinx-rtd-theme-1.2.0 sphinx-togglebutton-0.3.2 sphinxcontrib-applehelp-1.0.4 sphinxcontrib-bibtex-2.5.0 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.1 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 spirack-0.2.4 sqlalchemy-1.4.47 stack-data-0.6.2 tabulate-0.9.0 tenacity-8.2.2 tinycss2-1.2.1 toml-0.10.2 tomli-2.0.1 toolz-0.12.0 tornado-6.2 tqdm-4.65.0 traitlets-5.9.0 typing-extensions-4.5.0 typing-inspect-0.8.0 uncertainties-3.1.7 unidecode-1.3.6 versioningit-2.2.0 wcwidth-0.2.6 webencodings-0.5.1 websockets-10.4 widgetsnbextension-4.0.5 wirerope-0.4.7 wrapt-1.15.0 xarray-2023.1.0 xxhash-3.2.0 zhinst-21.8.20515 zhinst-qcodes-0.1.4 zhinst-toolkit-0.1.5 zipp-3.15.0 [rtd-command-info] start-time: 2023-03-20T14:55:38.413582Z, end-time: 2023-03-20T14:55:38.476921Z, duration: 0, exit-code: 0 cat docs/conf.py #!/usr/bin/env python # pylint: disable=wrong-import-position, unused-import, invalid-name # # Quantify documentation build configuration file, created by # sphinx-quickstart on Fri Jun 9 13:47:02 2017. # # This file is execfile()d with the current directory set to its # containing dir. # # Note that not all possible configuration values are present in this # autogenerated file. # # All configuration values have a default; values that are commented out # serve to show the default. # If extensions (or modules to document with autodoc) are in another # directory, add these directories to sys.path here. If the directory is # relative to the documentation root, use os.path.abspath to make it # absolute, like shown here. # import os import sys package_path = os.path.abspath("..") sys.path.insert(0, package_path) # -- General configuration --------------------------------------------- # pylint: disable=invalid-name # If your documentation needs a minimal Sphinx version, state it here. # # needs_sphinx = '1.0' # Add any Sphinx extension module names here, as strings. They can be # extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones. extensions = [ "myst_nb", "sphinx.ext.autodoc", # auto document docstrings "sphinx.ext.napoleon", # autodoc understands numpy docstrings # load after napoleon, improved compatibility with type hints annotations "sphinx_autodoc_typehints", "sphinx.ext.viewcode", "sphinx.ext.intersphinx", "sphinx.ext.autosectionlabel", "sphinx-jsonschema", "sphinx_rtd_theme", "sphinx.ext.mathjax", "sphinx.ext.todo", "jupyter_sphinx", "sphinx_togglebutton", # fancy type hints in docs and # solves the same issue as "sphinx_automodapi.smart_resolver" # however the smart_resolver seems to fail for external packages like `zhinst` "scanpydoc.elegant_typehints", "sphinxcontrib.bibtex", "autoapi.extension", ] # Add any paths that contain templates here, relative to this directory. templates_path = ["_templates"] intersphinx_mapping = { "python": ("https://docs.python.org/3", None), "qcodes": ("https://qcodes.github.io/Qcodes/", None), "xarray": ("https://xarray.pydata.org/en/stable/", None), "numpy": ("https://numpy.org/doc/stable/", None), "pandas": ("https://pandas.pydata.org/pandas-docs/dev/", None), "matplotlib": ("https://matplotlib.org/stable/", None), "lmfit": ("https://lmfit.github.io/lmfit-py/", None), "dateutil": ("https://dateutil.readthedocs.io/en/stable/", None), "fastjsonschema": ("https://horejsek.github.io/python-fastjsonschema/", None), "quantify-core": ( "https://quantify-quantify-core.readthedocs-hosted.com/en/latest/", None, ), "scipy": ("https://docs.scipy.org/doc/scipy/reference/", None), "qblox-instruments": ( "https://qblox-qblox-instruments.readthedocs-hosted.com/en/master/", None, ), "zhinst-toolkit": ("https://docs.zhinst.com/zhinst-toolkit/en/latest/", None), "zhinst-qcodes": ("https://docs.zhinst.com/zhinst-qcodes/en/v0.1/", None), } bibtex_bibfiles = ["refs.bib"] bibtex_reference_style = "author_year" # The suffix(es) of source filenames. # You can specify multiple suffix as a list of string: source_suffix = [".rst", ".md"] # The master toctree document. master_doc = "index" # General information about the project. project = "quantify-scheduler" copyright = "2020-2023, Qblox & Orange Quantum Systems" author = "Quantify Consortium" # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. # # This is also used if you do content translation via gettext catalogs. # Usually you set "language" from the command line for these cases. language = "en" # List of patterns, relative to source directory, that match files and # directories to ignore when looking for source files. # This patterns also effect to html_static_path and html_extra_path exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"] # The name of the Pygments (syntax highlighting) style to use. pygments_style = "sphinx" # If true, `todo` and `todoList` produce output, else they produce nothing. todo_include_todos = True # Document __init__ docstring together with class doctring (when __init__ is present) napoleon_include_init_with_doc = True # NB the line below could be used for a similar result # BUT the line below ALWAYS includes the __init__ docstring even if it come from the # parent class which is undesired for analysis subclasses, for example. # autoclass_content = "both" # -- Options for HTML output ------------------------------------------- # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # html_theme = "sphinx_rtd_theme" # The name of an image file (relative to this directory) to place at the top # of the sidebar. # the white text fits better with the current sphinx theme # both files are in the repository # html_logo = "images/QUANTIFY-LOGO.svg" html_logo = "images/QUANTIFY-LOGO-WHITE-TEXT.svg" # The name of an image file (within the static path) to use as favicon of the # docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 # pixels large. html_favicon = "images/QUANTIFY-FAVICON_16.png" # Theme options are theme-specific and customize the look and feel of a # theme further. For a list of options available for each theme, see the # documentation. # # html_theme_options = {} # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, # so a file named "default.css" will overwrite the builtin "default.css". html_static_path = ["_static"] html_css_files = [ "quantify_scheduler.css", ] # -- Options for HTMLHelp output --------------------------------------- # Output file base name for HTML help builder. htmlhelp_basename = "quantifydoc" html_context = { "display_gitlab": True, "gitlab_user": "quantify-os", "gitlab_repo": "quantify-scheduler", "gitlab_version": "main/docs/", } # -- Options for LaTeX output ------------------------------------------ latex_elements = { # The paper size ('letterpaper' or 'a4paper'). # # 'papersize': 'letterpaper', # The font size ('10pt', '11pt' or '12pt'). # # 'pointsize': '10pt', # Additional stuff for the LaTeX preamble. # # 'preamble': '', # Latex figure (float) alignment # # 'figure_align': 'htbp', } # Grouping the document tree into LaTeX files. List of tuples # (source start file, target name, title, author, documentclass # [howto, manual, or own class]). latex_documents = [ ( master_doc, "quantify_scheduler.tex", "Quantify Documentation", "Quantify Consortium", "manual", ), ] # -- Options for manual page output ------------------------------------ # One entry per manual page. List of tuples # (source start file, name, description, authors, manual section). man_pages = [(master_doc, "quantify", "quantify Documentation", [author], 1)] # -- Options for Texinfo output ---------------------------------------- # Grouping the document tree into Texinfo files. List of tuples # (source start file, target name, title, author, # dir menu entry, description, category) texinfo_documents = [ ( master_doc, "quantify-scheduler", "Quantify-scheduler Documentation", author, "quantify-scheduler", "One line description of project.", "Miscellaneous", ), ] # -- Other Options ----------------------------------------------------- # see https://sphinx-autoapi.readthedocs.io/en/latest/reference/config.html autoapi_type = "python" autoapi_generate_api_docs = True autoapi_dirs = ["../quantify_scheduler"] ignore_module_all = True autoapi_add_toctree_entry = False autoapi_options = [ "members", "undoc-members", "private-members", "show-inheritance", "show-module-summary", # Including `important-members` displays the description of class aliases in the # docs, however, it causes sphinx to raise multiple warnings about finding # multiple targets for cross-references. # "imported-members", ] # displays docstrings inside __init__ autoapi_python_class_content = "both" # avoid duplicate label warning even when manual label has been used; suppress_warnings = [ "autosectionlabel.*", "mystnb.unknown_mime_type", ] # avoid ugly very long module_a.module_b.module_c.module_d.module_e.module_d.MyClass # display in docs (very ugly when overflowing the html page width) # NB the side bar and the link of these objects already includes the full path add_module_names = False # Used by scanpydoc.elegant_typehints to correctly link to references to python objects # that have a mismatch between the python modules real location vs how they are imported # and documented. These overrides are necessary to fix "reference target not found" when # these classes are used as type annotations. # NB Use this only for external packages. Do not do this in quantify and cause problems # to internal and external developers. qualname_overrides = { # "" : "" "matplotlib.axes._axes.Axes": "matplotlib.axes.Axes", "zhinst.qcodes.uhfqa.UHFQA": "zhinst.qcodes.UHFQA", "zhinst.qcodes.hdawg.HDAWG": "zhinst.qcodes.HDAWG", } numfig = True autodoc_default_options = { "member-order": "groupwise", # Ignore any __all__ that might be added accidentally by inexperienced developers # This is done to avoid nasty complications with sphinx and its extensions and # plenty of "reference target not found" warnings. # See also qualname_overrides above, which has to be used for external packages. "ignore-module-all": True, } # For debugging the CI just add `or True` on the line below if os.environ.get("GITLAB_CI", "false") == "true": print("\n[INFO] Building docs with private-members... See `conf.py` for details.\n") # for local build and CI force documentation to build for private members # this make sure the docstrings of private members are also correctly formatted, etc autodoc_default_options["private-members"] = True # -- Options for auto documenting typehints ---------------------------- # Please see https://gitlab.com/quantify-os/quantify/-/issues/10 regarding # below should be imported all "problematic" modules that might raise strange issues # when building the docs # e.g., to "partially initialized module", or "most likely due to a circular import" # This is a practical solution. We tried fixing certain things upstream, e.g.: # https://github.com/QCoDeS/Qcodes/pull/2909 # but the issues popped up again, so this is the best and easier solution so far # qcodes imports scipy under the hood but since scipy=1.7.0 it needs to be imported # here with typing.TYPE_CHECKING = True otherwise we run into quantify-core# import lmfit # related to quantify-core#218 and quantify-core#221 import marshmallow import qcodes # qcodes0.36.0 lazyloads h5py which causes build failures import h5py # Prevents a circular import warning import tenacity # `pydantic` fails to import automatically and leads to broken documentation, # if not preloaded. import pydantic # When building the docs we need `typing.TYPE_CHECKING` to be `True` so that the # sphinx' kernel loads the modules corresponding to the typehints and is able to # auto document types. The modules listed above create issues when loaded with # `typing.TYPE_CHECKING = True` so we import them beforehand to avoid nasty issues. # It is a good practice to make use of the following construct to import modules that # are used for type hints ONLY! the construct is the following: # if typing.TYPE_CHECKING: # import my_expensive_to_import_module as my_module # NB if you run into any circular import issue it is because you are importing module # member directly from a module, i.e.: # if typing.TYPE_CHECKING: # from my_expensive_to_import_module import BlaClass # Potential circular import set_type_checking_flag = True # this will run `typing.TYPE_CHECKING = True` # The following fails the build when one of the notebooks has an execution error. nb_execution_raise_on_error = True # Making sure sphinx builders understand cells which include multiple mime types, # for example linkcheck can check cells which contain html and images nb_mime_priority_overrides = [ ("linkcheck", "text/html", 0), ("linkcheck", "image/png", 40), ] # Enable nitpicky mode - warns about all references where the target cannot be found # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-nitpicky nitpicky = True # equivalent to `-n` option in the docs Makefile nitpick_ignore = [ ("py:class", "quantify_scheduler.device_under_test.composite_square_edge"), ( "py:class", "quantify_scheduler.schedules.schedule.CompiledSchedule.hardware_waveform_dict", ), ( "py:class", "quantify_scheduler.schedules.schedule.CompiledSchedule.hardware_timing_table", ), ("py:class", "quantify_scheduler.helpers.schedule.AcquisitionMetadata"), ("py:class", "_StaircaseParameters"), ("py:class", "quantify_scheduler.operations.operation.Operation"), ("py:class", "quantify_scheduler.operations.operation.Operation.valid_pulse"), ( "py:class", "quantify_scheduler.instrument_coordinator.instrument_coordinator.InstrumentCoordinator", ), ( "py:class", "quantify_scheduler.instrument_coordinator.components.InstrumentCoordinatorComponentBase", ), ("py:class", "AcquisitionIndexing"), ("py:obj", "quantify_scheduler.Operation"), ("py:class", "quantify_scheduler.Operation"), ("py:obj", "quantify_scheduler.Resource"), ("py:class", "quantify_scheduler.Resource"), ("py:obj", "quantify_scheduler.structure.DataStructure"), ("py:obj", "quantify_scheduler.backends.SerialCompiler"), ("py:obj", "quantify_scheduler.schedules.heterodyne_spec_sched"), ("py:obj", "quantify_scheduler.schedules.nv_dark_esr_sched"), ("py:obj", "quantify_scheduler.schedules.two_tone_spec_sched"), ("py:obj", "quantify_scheduler.schedules.allxy_sched"), ("py:obj", "quantify_scheduler.schedules.echo_sched"), ("py:obj", "quantify_scheduler.schedules.rabi_pulse_sched"), ("py:obj", "quantify_scheduler.schedules.rabi_sched"), ("py:obj", "quantify_scheduler.schedules.ramsey_sched"), ("py:obj", "quantify_scheduler.schedules.readout_calibration_sched"), ("py:obj", "quantify_scheduler.schedules.t1_sched"), ("py:obj", "quantify_scheduler.schedules.trace_schedule"), ("py:obj", "quantify_scheduler.schedules.trace_schedule_circuit_layer"), ("py:obj", "quantify_scheduler.schedules.two_tone_trace_schedule"), ] # Tuple[str, str], ignore certain warnings nitpick_ignore_regex = [ ("py:class", r"numpy.*"), ("py:class", r"plotly.*"), ("py:.*", r"orjson.*"), ("py:.*", r"pydantic.*"), ("py:.*", r"qcodes.*"), ("py:class", r"Ellipsis.*"), ("py:class", r"Parameter.*"), ("py:.*", r"dataclasses_json.*"), (".*", r".*Schedule"), ("py:class", r"qblox_instruments.*"), ("py:class", r"matplotlib.*"), ] with open("nitpick-exceptions.txt", encoding="utf-8") as nitpick_exceptions: for line in nitpick_exceptions: if line.strip() == "" or line.startswith("#"): continue dtype, target = line.split(None, 1) target = target.strip() nitpick_ignore.append((dtype, target)) ########################################################################### # auto-created readthedocs.org specific configuration # ########################################################################### # # The following code was added during an automated build on readthedocs.org # It is auto created and injected for every build. The result is based on the # conf.py.tmpl file found in the readthedocs.org codebase: # https://github.com/rtfd/readthedocs.org/blob/main/readthedocs/doc_builder/templates/doc_builder/conf.py.tmpl # # Note: this file shouldn't rely on extra dependencies. import importlib import sys import os.path # Borrowed from six. PY3 = sys.version_info[0] == 3 string_types = str if PY3 else basestring from sphinx import version_info # Get suffix for proper linking to GitHub # This is deprecated in Sphinx 1.3+, # as each page can have its own suffix if globals().get('source_suffix', False): if isinstance(source_suffix, string_types): SUFFIX = source_suffix elif isinstance(source_suffix, (list, tuple)): # Sphinx >= 1.3 supports list/tuple to define multiple suffixes SUFFIX = source_suffix[0] elif isinstance(source_suffix, dict): # Sphinx >= 1.8 supports a mapping dictionary for multiple suffixes SUFFIX = list(source_suffix.keys())[0] # make a ``list()`` for py2/py3 compatibility else: # default to .rst SUFFIX = '.rst' else: SUFFIX = '.rst' # Add RTD Static Path. Add to the end because it overwrites previous files. if not 'html_static_path' in globals(): html_static_path = [] if os.path.exists('_static'): html_static_path.append('_static') # Add RTD Theme only if they aren't overriding it already using_rtd_theme = ( ( 'html_theme' in globals() and html_theme in ['default'] and # Allow people to bail with a hack of having an html_style 'html_style' not in globals() ) or 'html_theme' not in globals() ) if using_rtd_theme: html_theme = 'sphinx_rtd_theme' html_style = None html_theme_options = {} # This following legacy behavior will gradually be sliced out until its deprecated and removed. # Skipped for Sphinx 6+ # Skipped by internal Feature flag SKIP_SPHINX_HTML_THEME_PATH # Skipped by all new projects since SKIP_SPHINX_HTML_THEME_PATH's introduction (jan 2023) if ( using_rtd_theme and version_info < (6,0) and not False ): theme = importlib.import_module('sphinx_rtd_theme') if 'html_theme_path' in globals(): html_theme_path.append(theme.get_html_theme_path()) else: html_theme_path = [theme.get_html_theme_path()] # 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For sphinx >=1.8 we can use html_baseurl to set the canonical URL. # https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-html_baseurl if version_info >= (1, 8): if not globals().get('html_baseurl'): html_baseurl = context['canonical_url'] context['canonical_url'] = None if 'html_context' in globals(): html_context.update(context) else: html_context = context # Add custom RTD extension if 'extensions' in globals(): # Insert at the beginning because it can interfere # with other extensions. # See https://github.com/rtfd/readthedocs.org/pull/4054 extensions.insert(0, "readthedocs_ext.readthedocs") else: extensions = ["readthedocs_ext.readthedocs"] # Add External version warning banner to the external version documentation if 'external' == 'external': extensions.insert(1, "readthedocs_ext.external_version_warning") readthedocs_vcs_url = 'https://gitlab.com/quantify-os/quantify-scheduler/merge_requests/641' readthedocs_build_url = 'https://readthedocs.com/projects/quantify-quantify-scheduler/builds/1362247/' project_language = 'en' # User's Sphinx configurations language_user = globals().get('language', None) latex_engine_user = globals().get('latex_engine', None) latex_elements_user = globals().get('latex_elements', None) # Remove this once xindy gets installed in Docker image and XINDYOPS # env variable is supported # https://github.com/rtfd/readthedocs-docker-images/pull/98 latex_use_xindy = False chinese = any([ language_user in ('zh_CN', 'zh_TW'), project_language in ('zh_CN', 'zh_TW'), ]) japanese = any([ language_user == 'ja', project_language == 'ja', ]) if chinese: latex_engine = latex_engine_user or 'xelatex' latex_elements_rtd = { 'preamble': '\\usepackage[UTF8]{ctex}\n', } latex_elements = latex_elements_user or latex_elements_rtd elif japanese: latex_engine = latex_engine_user or 'platex' # Make sure our build directory is always excluded exclude_patterns = globals().get('exclude_patterns', []) exclude_patterns.extend(['_build']) [rtd-command-info] start-time: 2023-03-20T14:55:38.714474Z, end-time: 2023-03-20T14:56:57.267319Z, duration: 78, exit-code: 2 python -m sphinx -T -E -b html -d _build/doctrees -D language=en . $READTHEDOCS_OUTPUT/html Running Sphinx v5.3.0 making output directory... done checking bibtex cache... out of date parsing bibtex file /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/docs/refs.bib... parsed 8 entries myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area') myst-nb v0.17.1: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, execution_mode='auto', execution_cache_path='', execution_excludepatterns=(), execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=True, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False) Using jupyter-cache at: /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/_readthedocs/.jupyter_cache loading intersphinx inventory from https://docs.python.org/3/objects.inv... loading intersphinx inventory from https://qcodes.github.io/Qcodes/objects.inv... loading intersphinx inventory from https://xarray.pydata.org/en/stable/objects.inv... loading intersphinx inventory from https://numpy.org/doc/stable/objects.inv... loading intersphinx inventory from https://pandas.pydata.org/pandas-docs/dev/objects.inv... loading intersphinx inventory from https://matplotlib.org/stable/objects.inv... loading intersphinx inventory from https://lmfit.github.io/lmfit-py/objects.inv... loading intersphinx inventory from https://dateutil.readthedocs.io/en/stable/objects.inv... loading intersphinx inventory from https://horejsek.github.io/python-fastjsonschema/objects.inv... loading intersphinx inventory from https://quantify-quantify-core.readthedocs-hosted.com/en/latest/objects.inv... intersphinx inventory has moved: https://xarray.pydata.org/en/stable/objects.inv -> https://docs.xarray.dev/en/stable/objects.inv loading intersphinx inventory from https://docs.scipy.org/doc/scipy/reference/objects.inv... loading intersphinx inventory from https://qblox-qblox-instruments.readthedocs-hosted.com/en/master/objects.inv... loading intersphinx inventory from https://docs.zhinst.com/zhinst-toolkit/en/latest/objects.inv... loading intersphinx inventory from https://docs.zhinst.com/zhinst-qcodes/en/v0.1/objects.inv... intersphinx inventory has moved: https://docs.scipy.org/doc/scipy/reference/objects.inv -> https://docs.scipy.org/doc/scipy/objects.inv [AutoAPI] Reading files... 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[ 87%] examples/deprecated /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/docs/examples/deprecated.md: Executing notebook using local CWD [mystnb] /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/docs/autoapi/quantify_scheduler/backends/graph_compilation/index.rst:11: WARNING: Inline interpreted text or phrase reference start-string without end-string. WARNING: Cell printed to stderr: Matplotlib is building the font cache; this may take a moment. /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/docs/autoapi/quantify_scheduler/backends/qblox/compiler_abc/index.rst:16: WARNING: Explicit markup ends without a blank line; unexpected unindent. /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/docs/autoapi/quantify_scheduler/backends/qblox/helpers/index.rst:52::1: ERROR: Content block expected for the "warning" directive; none found. /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/docs/autoapi/quantify_scheduler/compilation/index.rst:19: WARNING: Field list ends without a blank line; unexpected unindent. Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/jupyter_cache/executors/utils.py", line 58, in single_nb_execution executenb( File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/nbclient/client.py", line 1204, in execute return NotebookClient(nb=nb, resources=resources, km=km, **kwargs).execute() File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/nbclient/util.py", line 84, in wrapped return just_run(coro(*args, **kwargs)) File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/nbclient/util.py", line 62, in just_run return loop.run_until_complete(coro) File "/home/docs/.pyenv/versions/3.8.6/lib/python3.8/asyncio/base_events.py", line 616, in run_until_complete return future.result() File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/nbclient/client.py", line 663, in async_execute await self.async_execute_cell( File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/nbclient/client.py", line 965, in async_execute_cell await self._check_raise_for_error(cell, cell_index, exec_reply) File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/nbclient/client.py", line 862, in _check_raise_for_error raise CellExecutionError.from_cell_and_msg(cell, exec_reply_content) nbclient.exceptions.CellExecutionError: An error occurred while executing the following cell: ------------------ from quantify_core.data import handling as dh from quantify_core.measurement.control import MeasurementControl from quantify_scheduler.instrument_coordinator import InstrumentCoordinator from quantify_scheduler.instrument_coordinator.components.qblox import ClusterComponent from qblox_instruments import Cluster, ClusterType from qcodes import Instrument dh.set_datadir(dh.default_datadir()) Instrument.close_all() meas_ctrl = MeasurementControl("meas_ctrl") ic = InstrumentCoordinator("ic") cluster = Cluster( "cluster", dummy_cfg={ 1: ClusterType.CLUSTER_QRM_RF, }, ) ic_cluster = ClusterComponent(cluster) ic.add_component(ic_cluster) # Always picks the first module of a certain type, and ignores the others of same type! qcm_rf, qrm_rf, qcm, qrm = [None] * 4 for module in cluster.modules: try: if module.is_rf_type: if module.is_qcm_type: if qcm_rf is None: qcm_rf = module else: if qrm_rf is None: qrm_rf = module else: if module.is_qcm_type: if qcm is None: qcm = module else: if qrm is None: qrm = module except KeyError: continue print(f"qcm => {qcm}\nqrm => {qrm}\nqcm_rf => {qcm_rf}\nqrm_rf => {qrm_rf}") ------------------ --------------------------------------------------------------------------- NotImplementedError Traceback (most recent call last) Cell In[1], line 13  11 Instrument.close_all()  12 meas_ctrl = MeasurementControl("meas_ctrl") ---> 13 ic = InstrumentCoordinator("ic")  15 cluster = Cluster(  16 "cluster",  17 dummy_cfg={  18 1: ClusterType.CLUSTER_QRM_RF,  19 },  20 )  22 ic_cluster = ClusterComponent(cluster) File ~/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/qcodes/instrument/instrument_meta.py:36, in InstrumentMeta.__call__(cls, *args, **kwargs)  31 def __call__(cls, *args: Any, **kwargs: Any) -> Any:  32  """  33  Overloads `type.__call__` to add code that runs only if __init__ completes  34  successfully.  35  """ ---> 36 new_inst = super().__call__(*args, **kwargs)  37 is_abstract = new_inst._is_abstract()  38 if is_abstract: File ~/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/quantify_scheduler/instrument_coordinator/instrument_coordinator.py:110, in InstrumentCoordinator.__init__(self, name, add_default_generic_icc)  108 self._last_schedule = None  109 if add_default_generic_icc: --> 110 self.add_component(  111  generic.GenericInstrumentCoordinatorComponent(generic.DEFAULT_NAME)  112  )  113 self._compiled_schedule = {} File ~/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/quantify_scheduler/instrument_coordinator/instrument_coordinator.py:190, in InstrumentCoordinator.add_component(self, component)  187 raise ValueError(f"'{component.name}' has already been added!")  189 # Raise a warning when a UHFQA is added after an HDAWG, because this might cause triggering issues (#324) --> 190 if isinstance(component.instrument, UHFQA) and any(  191 [isinstance(comp.instrument, HDAWG) for comp in self.components()]  192 ):  193 warnings.warn(  194 "You are adding a UHFQA IC component, while a HDAWG IC component has already "  195 "been added to the Instrument Coordinator. Since the instruments are started "  (...)  198 "the Instrument Coordinator last, or you might experience triggering issues."  199 )  201 if not isinstance(component, base.InstrumentCoordinatorComponentBase): File ~/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/quantify_scheduler/instrument_coordinator/components/generic.py:67, in GenericInstrumentCoordinatorComponent.instrument(self)  61 @property  62 def instrument(self):  63  """  64  Overwrite the instrument method. There is no instrument for the  65  GenericInstrumentCoordinatorComponent class.  66  """ ---> 67 raise NotImplementedError NotImplementedError: NotImplementedError: The above exception was the direct cause of the following exception: Traceback (most recent call last): File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/sphinx/cmd/build.py", line 281, in build_main app.build(args.force_all, args.filenames) File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/sphinx/application.py", line 347, in build self.builder.build_update() File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/sphinx/builders/__init__.py", line 310, in build_update self.build(to_build, File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/sphinx/builders/__init__.py", line 326, in build updated_docnames = set(self.read()) File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/sphinx/builders/__init__.py", line 433, in read self._read_serial(docnames) File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/sphinx/builders/__init__.py", line 454, in _read_serial self.read_doc(docname) File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/sphinx/builders/__init__.py", line 510, in read_doc publisher.publish() File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/docutils/core.py", line 217, in publish self.document = self.reader.read(self.source, self.parser, File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/sphinx/io.py", line 104, in read self.parse() File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/docutils/readers/__init__.py", line 78, in parse self.parser.parse(self.input, document) File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/myst_nb/sphinx_.py", line 150, in parse with create_client( File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/myst_nb/core/execute/base.py", line 83, in __enter__ self.start_client() File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/myst_nb/core/execute/direct.py", line 50, in start_client raise ExecutionError(str(self.path)) from result.err myst_nb.core.execute.base.ExecutionError: /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/docs/examples/deprecated.md Exception occurred: File "/home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/641/lib/python3.8/site-packages/myst_nb/core/execute/direct.py", line 50, in start_client raise ExecutionError(str(self.path)) from result.err myst_nb.core.execute.base.ExecutionError: /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/checkouts/641/docs/examples/deprecated.md The full traceback has been saved in /tmp/sphinx-err-9trxya34.log, if you want to report the issue to the developers. Please also report this if it was a user error, so that a better error message can be provided next time. A bug report can be filed in the tracker at . Thanks!