Read the Docs build information
Build id: 1153215
Project: quantify-quantify-scheduler
Version: main
Commit: cb7fbdaec4f819c14f8db296c7b63dc3eccc21e7
Date: 2022-10-25T15:40:52.729107Z
State: finished
Success: True


[rtd-command-info] start-time: 2022-10-25T15:40:54.804424Z, end-time: 2022-10-25T15:40:59.491520Z, duration: 4, exit-code: 0
git clone --no-single-branch --depth 50 git@gitlab.com:quantify-os/quantify-scheduler.git .
Cloning into '.'...
Warning: Permanently added 'gitlab.com,172.65.251.78' (ECDSA) to the list of known hosts.

[rtd-command-info] start-time: 2022-10-25T15:40:59.763017Z, end-time: 2022-10-25T15:40:59.963136Z, duration: 0, exit-code: 0
git checkout --force origin/main
Note: switching to 'origin/main'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by switching back to a branch.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -c with the switch command. Example:

  git switch -c <new-branch-name>

Or undo this operation with:

  git switch -

Turn off this advice by setting config variable advice.detachedHead to false

HEAD is now at cb7fbdae Merge branch 'QAE-224-omit-json' into 'main'

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git clean -d -f -f


[rtd-command-info] start-time: 2022-10-25T15:41:01.224321Z, end-time: 2022-10-25T15:41:15.955641Z, duration: 14, exit-code: 0
python3.8 -mvirtualenv --system-site-packages 
Using base prefix '/home/docs/.pyenv/versions/3.8.6'
New python executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/main/bin/python3.8
Also creating executable in /home/docs/checkouts/readthedocs.org/user_builds/quantify-quantify-scheduler/envs/main/bin/python
Installing setuptools, pip, wheel...
done.

[rtd-command-info] start-time: 2022-10-25T15:41:16.142875Z, end-time: 2022-10-25T15:41:18.040076Z, duration: 1, exit-code: 0
python -m pip install --upgrade --no-cache-dir pip setuptools<58.3.0
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python -m pip install --upgrade --no-cache-dir -I pillow mock==1.0.1 alabaster>=0.7,<0.8,!=0.7.5 commonmark==0.9.1 recommonmark==0.5.0 sphinx<2 sphinx-rtd-theme<0.5 readthedocs-sphinx-ext<2.2 jinja2<3.1.0 setuptools<58.3.0
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Building wheels for collected packages: quantify-scheduler, qblox-instruments, zhinst-toolkit, lmfit, future
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  Stored in directory: /tmp/pip-ephem-wheel-cache-ik0guj92/wheels/5d/07/4e/d654cb28adbcc468c1d2e5d7a9a9a0a9097b00b8a922d3ac35
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  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491067 sha256=0224348f8854c1177547573453978a8e75c95c9339e389154c6b2c34be241f0b
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Successfully built quantify-scheduler qblox-instruments zhinst-toolkit lmfit future
Installing collected packages: sortedcontainers, pyserial, PyQt5-Qt5, pyasn1, opencensus-context, ifaddr, directory-tree, appnope, xxhash, websockets, typing-inspect, toolz, tenacity, sortedcollections, setuptools, rsa, pyvisa, pytzdata, PyQt5-sip, PyJWT, pydantic, pyasn1-modules, protobuf, portalocker, pathvalidate, orjson, numpy, networkx, kiwisolver, jinja2, importlib-metadata, future, fonttools, cycler, contextlib2, cloudpickle, cachetools, asteval, zhinst, versioningit, uncertainties, spirack, scipy, schema, pyqtgraph, pyqt5, plotly, pendulum, pandas, marshmallow, loky, h5py, googleapis-common-protos, google-auth, cryptography, contourpy, columnar, azure-core, zhinst-toolkit, xarray, matplotlib, marshmallow-enum, lmfit, h5netcdf, google-api-core, adaptive, opencensus, msal, dataclasses-json, broadbean, msal-extensions, azure-identity, opencensus-ext-azure, qcodes, zhinst-qcodes, quantify_core, qblox-instruments, quantify-scheduler
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Successfully installed PyJWT-2.6.0 PyQt5-Qt5-5.15.2 PyQt5-sip-12.11.0 adaptive-0.14.2 appnope-0.1.3 asteval-0.9.27 azure-core-1.26.0 azure-identity-1.11.0 broadbean-0.11.0 cachetools-5.2.0 cloudpickle-2.2.0 columnar-1.4.1 contextlib2-21.6.0 contourpy-1.0.5 cryptography-38.0.1 cycler-0.11.0 dataclasses-json-0.5.7 directory-tree-0.0.2 fonttools-4.38.0 future-0.18.2 google-api-core-2.10.2 google-auth-2.13.0 googleapis-common-protos-1.56.4 h5netcdf-1.0.2 h5py-3.7.0 ifaddr-0.2.0 importlib-metadata-4.13.0 jinja2-3.1.2 kiwisolver-1.4.4 lmfit-1.0.3 loky-3.3.0 marshmallow-3.18.0 marshmallow-enum-1.5.1 matplotlib-3.6.1 msal-1.20.0 msal-extensions-1.0.0 networkx-2.8.7 numpy-1.23.4 opencensus-0.8.0 opencensus-context-0.1.2 opencensus-ext-azure-1.1.4 orjson-3.8.0 pandas-1.5.1 pathvalidate-2.5.2 pendulum-2.1.2 plotly-5.10.0 portalocker-2.6.0 protobuf-4.21.8 pyasn1-0.4.8 pyasn1-modules-0.2.8 pydantic-1.10.2 pyqt5-5.15.7 pyqtgraph-0.12.4 pyserial-3.5 pytzdata-2020.1 pyvisa-1.11.3 qblox-instruments-0.7.0 qcodes-0.33.0 quantify-scheduler-0.9.0 quantify_core-0.6.4 rsa-4.9 schema-0.7.5 scipy-1.9.3 setuptools-65.5.0 sortedcollections-2.1.0 sortedcontainers-2.4.0 spirack-0.2.4 tenacity-8.1.0 toolz-0.12.0 typing-inspect-0.8.0 uncertainties-3.1.7 versioningit-2.0.1 websockets-10.3 xarray-2022.10.0 xxhash-3.1.0 zhinst-21.8.20515 zhinst-qcodes-0.1.4 zhinst-toolkit-0.1.5

[rtd-command-info] start-time: 2022-10-25T15:43:04.651624Z, end-time: 2022-10-25T15:43:04.736725Z, duration: 0, exit-code: 0
cat docs/conf.py
#!/usr/bin/env python
# pylint: disable=wrong-import-position, unused-import, invalid-name
#
# Quantify documentation build configuration file, created by
# sphinx-quickstart on Fri Jun  9 13:47:02 2017.
#
# This file is execfile()d with the current directory set to its
# containing dir.
#
# Note that not all possible configuration values are present in this
# autogenerated file.
#
# All configuration values have a default; values that are commented out
# serve to show the default.

# If extensions (or modules to document with autodoc) are in another
# directory, add these directories to sys.path here. If the directory is
# relative to the documentation root, use os.path.abspath to make it
# absolute, like shown here.
#
import os
import sys

package_path = os.path.abspath("..")
sys.path.insert(0, package_path)


# -- General configuration ---------------------------------------------
# pylint: disable=invalid-name

# If your documentation needs a minimal Sphinx version, state it here.
#
# needs_sphinx = '1.0'

# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
extensions = [
    "myst_nb",
    "sphinx.ext.autodoc",  # auto document docstrings
    "sphinx.ext.napoleon",  # autodoc understands numpy docstrings
    # load after napoleon, improved compatibility with type hints annotations
    "sphinx_autodoc_typehints",
    "sphinx.ext.viewcode",
    "sphinx.ext.intersphinx",
    "sphinx.ext.autosectionlabel",
    "sphinx-jsonschema",
    "sphinx_rtd_theme",
    "sphinx.ext.mathjax",
    "sphinx.ext.todo",
    "jupyter_sphinx",
    "sphinx_togglebutton",
    # fancy type hints in docs and
    # solves the same issue as "sphinx_automodapi.smart_resolver"
    # however the smart_resolver seems to fail for external packages like `zhinst`
    "scanpydoc.elegant_typehints",
    "sphinxcontrib.bibtex",
    "autoapi.extension",
]


# Add any paths that contain templates here, relative to this directory.
templates_path = ["_templates"]

intersphinx_mapping = {
    "python": ("https://docs.python.org/3", None),
    "qcodes": ("https://qcodes.github.io/Qcodes/", None),
    "xarray": ("https://xarray.pydata.org/en/stable/", None),
    "numpy": ("https://numpy.org/doc/stable/", None),
    "pandas": ("https://pandas.pydata.org/pandas-docs/dev/", None),
    "matplotlib": ("https://matplotlib.org/stable/", None),
    "lmfit": ("https://lmfit.github.io/lmfit-py/", None),
    "dateutil": ("https://dateutil.readthedocs.io/en/stable/", None),
    "fastjsonschema": ("https://horejsek.github.io/python-fastjsonschema/", None),
    "quantify-core": (
        "https://quantify-quantify-core.readthedocs-hosted.com/en/latest/",
        None,
    ),
    "scipy": ("https://docs.scipy.org/doc/scipy/reference/", None),
    "qblox-instruments": (
        "https://qblox-qblox-instruments.readthedocs-hosted.com/en/master/",
        None,
    ),
    "zhinst-toolkit": ("https://docs.zhinst.com/zhinst-toolkit/en/latest/", None),
    "zhinst-qcodes": ("https://docs.zhinst.com/zhinst-qcodes/en/v0.1/", None),
}

bibtex_bibfiles = ["refs.bib"]
bibtex_reference_style = "author_year"


# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
#
# source_suffix = ['.rst', '.md']
source_suffix = [".rst", ".md"]

# The master toctree document.
master_doc = "index"

# General information about the project.
project = "Quantify-Scheduler"
copyright = "2020-2022, Qblox & Orange Quantum Systems"
author = "The Quantify consortium"


# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
#
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = "en"

# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]

# The name of the Pygments (syntax highlighting) style to use.
pygments_style = "sphinx"

# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True

# Document __init__ docstring together with class doctring (when __init__ is present)
napoleon_include_init_with_doc = True
# NB the line below could be used for a similar result
# BUT the line below ALWAYS includes the __init__ docstring even if it come from the
# parent class which is undesired for analysis subclasses, for example.
# autoclass_content = "both"


# -- Options for HTML output -------------------------------------------

# The theme to use for HTML and HTML Help pages.  See the documentation for
# a list of builtin themes.
#
html_theme = "sphinx_rtd_theme"


# The name of an image file (relative to this directory) to place at the top
# of the sidebar.

# the white text fits better with the current sphinx theme
# both files are in the repository
# html_logo = "images/QUANTIFY-LOGO.svg"
html_logo = "images/QUANTIFY-LOGO-WHITE-TEXT.svg"

# The name of an image file (within the static path) to use as favicon of the
# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
# pixels large.
html_favicon = "images/QUANTIFY-FAVICON_16.png"


# Theme options are theme-specific and customize the look and feel of a
# theme further.  For a list of options available for each theme, see the
# documentation.
#
# html_theme_options = {}

# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ["_static"]
html_css_files = [
    "quantify_scheduler.css",
]


# -- Options for HTMLHelp output ---------------------------------------

# Output file base name for HTML help builder.
htmlhelp_basename = "quantifydoc"

html_context = {
    "display_gitlab": True,
    "gitlab_user": "quantify-os",
    "gitlab_repo": "quantify-scheduler",
    "gitlab_version": "main/docs/",
}

# -- Options for LaTeX output ------------------------------------------

latex_elements = {
    # The paper size ('letterpaper' or 'a4paper').
    #
    # 'papersize': 'letterpaper',
    # The font size ('10pt', '11pt' or '12pt').
    #
    # 'pointsize': '10pt',
    # Additional stuff for the LaTeX preamble.
    #
    # 'preamble': '',
    # Latex figure (float) alignment
    #
    # 'figure_align': 'htbp',
}

# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title, author, documentclass
# [howto, manual, or own class]).
latex_documents = [
    (
        master_doc,
        "quantify_scheduler.tex",
        "quantify Documentation",
        "Quantify Consortium ",
        "manual",
    ),
]


# -- Options for manual page output ------------------------------------

# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [(master_doc, "quantify", "quantify Documentation", [author], 1)]


# -- Options for Texinfo output ----------------------------------------

# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
#  dir menu entry, description, category)
texinfo_documents = [
    (
        master_doc,
        "Quantify-Scheduler",
        "Quantify-Scheduler Documentation",
        author,
        "Quantify-Scheduler",
        "One line description of project.",
        "Miscellaneous",
    ),
]

# -- Other Options -----------------------------------------------------

autoapi_type = "python"
autoapi_generate_api_docs = True
autoapi_dirs = ["../quantify_scheduler"]
ignore_module_all = True
autoapi_add_toctree_entry = False
autoapi_options = [
    "members",
    "undoc-members",
    "private-members",
    "show-inheritance",
    "show-module-summary",
    "special-members",
    # Including `important-members` displays the description of class aliases in the
    # docs, however, it causes sphinx to raise multiple warnings about finding
    # multiple targets for cross-references.
    # "imported-members",
]

# avoid duplicate label warning even when manual label has been used;
suppress_warnings = [
    "autosectionlabel.*",
    "mystnb.unknown_mime_type",
]

# avoid ugly very long module_a.module_b.module_c.module_d.module_e.module_d.MyClass
# display in docs (very ugly when overflowing the html page width)
# NB the side bar and the link of these objects already includes the full path
add_module_names = False

# Used by scanpydoc.elegant_typehints to correctly link to references to python objects
# that have a mismatch between the python modules real location vs how they are imported
# and documented. These overrides are necessary to fix "reference target not found" when
# these classes are used as type annotations.
# NB Use this only for external packages. Do not do this in quantify and cause problems
# to internal and external developers.
qualname_overrides = {
    # "<true path to module>" : "<API path>"
    "matplotlib.axes._axes.Axes": "matplotlib.axes.Axes",
    "zhinst.qcodes.uhfqa.UHFQA": "zhinst.qcodes.UHFQA",
    "zhinst.qcodes.hdawg.HDAWG": "zhinst.qcodes.HDAWG",
}

numfig = True

autodoc_default_options = {
    "member-order": "groupwise",
    # Ignore any __all__ that might be added accidentally by inexperienced developers
    # This is done to avoid nasty complications with sphinx and its extensions and
    # plenty of "reference target not found" warnings.
    # See also qualname_overrides above, which has to be used for external packages.
    "ignore-module-all": True,
}

# For debugging the CI just add `or True` on the line below
if os.environ.get("GITLAB_CI", "false") == "true":
    print("\n[INFO] Building docs with private-members... See `conf.py` for details.\n")
    # for local build and CI force documentation to build for private members
    # this make sure the docstrings of private members are also correctly formatted, etc
    autodoc_default_options["private-members"] = True

# -- Options for auto documenting typehints ----------------------------

# Please see https://gitlab.com/quantify-os/quantify/-/issues/10 regarding

# below should be imported all "problematic" modules that might raise strange issues
# when building the docs
# e.g., to "partially initialized module", or "most likely due to a circular import"

# This is a practical solution. We tried fixing certain things upstream, e.g.:
# https://github.com/QCoDeS/Qcodes/pull/2909
# but the issues popped up again, so this is the best and easier solution so far

# qcodes imports scipy under the hood but since scipy=1.7.0 it needs to be imported
# here with typing.TYPE_CHECKING = True otherwise we run into quantify-core#
import lmfit  # related to quantify-core#218 and quantify-core#221
import marshmallow
import qcodes

# Prevents a circular import warning
import tenacity

# `pydantic` fails to import automatically and leads to broken documentation,
# if not preloaded.
import pydantic

# When building the docs we need `typing.TYPE_CHECKING` to be `True` so that the
# sphinx' kernel loads the modules corresponding to the typehints and is able to
# auto document types. The modules listed above create issues when loaded with
# `typing.TYPE_CHECKING = True` so we import them beforehand to avoid nasty issues.

# It is a good practice to make use of the following construct to import modules that
# are used for type hints ONLY! the construct is the following:

# if typing.TYPE_CHECKING:
#     import my_expensive_to_import_module as my_module

# NB if you run into any circular import issue it is because you are importing module
# member directly from a module, i.e.:

# if typing.TYPE_CHECKING:
#     from my_expensive_to_import_module import BlaClass # Potential circular import

set_type_checking_flag = True  # this will run `typing.TYPE_CHECKING = True`

# Enable nitpicky mode - warns about all references where the target cannot be found
# https://www.sphinx-doc.org/en/master/usage/configuration.html#confval-nitpicky

nitpicky = True  # equivalent to `-n` option in the docs Makefile
nitpick_ignore = [
    ("py:class", "quantify_scheduler.device_under_test.composite_square_edge"),
    (
        "py:class",
        "quantify_scheduler.schedules.schedule.CompiledSchedule.hardware_waveform_dict",
    ),
    (
        "py:class",
        "quantify_scheduler.schedules.schedule.CompiledSchedule.hardware_timing_table",
    ),
    ("py:class", "quantify_scheduler.helpers.schedule.AcquisitionMetadata"),
    ("py:class", "_StaircaseParameters"),
    ("py:class", "quantify_scheduler.operations.operation.Operation"),
    ("py:class", "quantify_scheduler.operations.operation.Operation.valid_pulse"),
    (
        "py:class",
        "quantify_scheduler.instrument_coordinator.instrument_coordinator.InstrumentCoordinator",
    ),
    (
        "py:class",
        "quantify_scheduler.instrument_coordinator.components.InstrumentCoordinatorComponentBase",
    ),
    ("py:class", "AcquisitionIndexing"),
    ("py:obj", "quantify_scheduler.Operation"),
    ("py:class", "quantify_scheduler.Operation"),
    ("py:obj", "quantify_scheduler.Resource"),
    ("py:class", "quantify_scheduler.Resource"),
    ("py:obj", "quantify_scheduler.structure.DataStructure"),
    ("py:obj", "quantify_scheduler.backends.SerialCompiler"),
]  # Tuple[str, str], ignore certain warnings

nitpick_ignore_regex = [
    ("py:class", r"numpy.*"),
    ("py:class", r"plotly.*"),
    ("py:.*", r"orjson.*"),
    ("py:.*", r"pydantic.*"),
    ("py:.*", r"qcodes.*"),
    ("py:class", r"Ellipsis.*"),
    ("py:class", r"Parameter.*"),
    ("py:.*", r"dataclasses_json.*"),
    (".*", r".*Schedule"),
    ("py:class", r"qblox_instruments.*"),
    ("py:class", r"matplotlib.*"),
]

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#
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# conf.py.tmpl file found in the readthedocs.org codebase:
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if 'branch' == 'external':
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project_language = 'en'

# User's Sphinx configurations
language_user = globals().get('language', None)
latex_engine_user = globals().get('latex_engine', None)
latex_elements_user = globals().get('latex_elements', None)

# Remove this once xindy gets installed in Docker image and XINDYOPS
# env variable is supported
# https://github.com/rtfd/readthedocs-docker-images/pull/98
latex_use_xindy = False

chinese = any([
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[rtd-command-info] start-time: 2022-10-25T15:43:04.976952Z, end-time: 2022-10-25T15:45:37.702794Z, duration: 152, exit-code: 0
python -m sphinx -T -E -b html -d _build/doctrees -D language=en . _build/html
Running Sphinx v5.3.0
making output directory... done
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myst v0.18.1: MdParserConfig(commonmark_only=False, gfm_only=False, enable_extensions=[], disable_syntax=[], all_links_external=False, url_schemes=('http', 'https', 'mailto', 'ftp'), ref_domains=None, highlight_code_blocks=True, number_code_blocks=[], title_to_header=False, heading_anchors=None, heading_slug_func=None, footnote_transition=True, words_per_minute=200, sub_delimiters=('{', '}'), linkify_fuzzy_links=True, dmath_allow_labels=True, dmath_allow_space=True, dmath_allow_digits=True, dmath_double_inline=False, update_mathjax=True, mathjax_classes='tex2jax_process|mathjax_process|math|output_area')
myst-nb v0.17.1: NbParserConfig(custom_formats={}, metadata_key='mystnb', cell_metadata_key='mystnb', kernel_rgx_aliases={}, execution_mode='auto', execution_cache_path='', execution_excludepatterns=(), execution_timeout=30, execution_in_temp=False, execution_allow_errors=False, execution_raise_on_error=False, execution_show_tb=False, merge_streams=False, render_plugin='default', remove_code_source=False, remove_code_outputs=False, code_prompt_show='Show code cell {type}', code_prompt_hide='Hide code cell {type}', number_source_lines=False, output_stderr='show', render_text_lexer='myst-ansi', render_error_lexer='ipythontb', render_image_options={}, render_figure_options={}, render_markdown_format='commonmark', output_folder='build', append_css=True, metadata_to_fm=False)
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